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Search of human proteins with 5453704
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5453704 ADP-ribosylation-like factor 6 interacting protein 5
[Homo sapiens]
(188 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5453704 ADP-ribosylation-like factor 6 interacting protein 5 ... 375 e-105
gi|6005794 PRA1 domain family, member 2 [Homo sapiens] 167 5e-42
gi|222144309 Rab acceptor 1 [Homo sapiens] 37 0.013
gi|71979932 solute carrier family 7 (cationic amino acid transpo... 30 0.94
gi|6912668 solute carrier family 35 member 3A [Homo sapiens] 29 2.1
gi|57165375 glutamate receptor, ionotropic, N-methyl D-aspartate... 29 2.7
gi|57165373 glutamate receptor, ionotropic, N-methyl D-aspartate... 29 2.7
gi|4506813 sodium channel, voltage-gated, type IX, alpha [Homo s... 28 3.6
gi|52317168 olfactory receptor, family 1, subfamily S, member 2 ... 28 3.6
gi|239749916 PREDICTED: hypothetical protein XP_002347212 [Homo ... 28 6.1
gi|239744219 PREDICTED: hypothetical protein XP_002343076 [Homo ... 28 6.1
gi|125988395 jumonji domain containing 6 isoform 1 [Homo sapiens] 28 6.1
gi|125988389 jumonji domain containing 6 isoform 2 [Homo sapiens] 28 6.1
gi|21264583 transmembrane 4 superfamily member 9 [Homo sapiens] 28 6.1
gi|115583677 sodium channel, voltage-gated, type I, alpha [Homo ... 27 7.9
gi|93141214 sodium channel, voltage-gated, type II, alpha isofor... 27 7.9
gi|93141212 sodium channel, voltage-gated, type II, alpha isofor... 27 7.9
gi|93141210 sodium channel, voltage-gated, type II, alpha isofor... 27 7.9
gi|40254947 thioredoxin-related transmembrane protein 4 [Homo sa... 27 7.9
gi|67191208 ubiquitin C [Homo sapiens] 27 7.9
>gi|5453704 ADP-ribosylation-like factor 6 interacting protein 5
[Homo sapiens]
Length = 188
Score = 375 bits (964), Expect = e-105
Identities = 188/188 (100%), Positives = 188/188 (100%)
Query: 1 MDVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISIVGF 60
MDVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISIVGF
Sbjct: 1 MDVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISIVGF 60
Query: 61 LSPFNMILGGIVVVLVFTGFVWAAHNKDVLRRMKKRYPTTFVMVVMLASYFLISMFGGVM 120
LSPFNMILGGIVVVLVFTGFVWAAHNKDVLRRMKKRYPTTFVMVVMLASYFLISMFGGVM
Sbjct: 61 LSPFNMILGGIVVVLVFTGFVWAAHNKDVLRRMKKRYPTTFVMVVMLASYFLISMFGGVM 120
Query: 121 VFVFGITFPLLLMFIHASLRLRNLKNKLENKMEGIGLKRTPMGIVLDALEQQEEGINRLT 180
VFVFGITFPLLLMFIHASLRLRNLKNKLENKMEGIGLKRTPMGIVLDALEQQEEGINRLT
Sbjct: 121 VFVFGITFPLLLMFIHASLRLRNLKNKLENKMEGIGLKRTPMGIVLDALEQQEEGINRLT 180
Query: 181 DYISKVKE 188
DYISKVKE
Sbjct: 181 DYISKVKE 188
>gi|6005794 PRA1 domain family, member 2 [Homo sapiens]
Length = 178
Score = 167 bits (423), Expect = 5e-42
Identities = 79/173 (45%), Positives = 117/173 (67%)
Query: 2 DVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISIVGFL 61
+V + PLRA DDF GS R A PD D +W +RV++NLLYYQTNYL+ + +++ G++
Sbjct: 3 EVRLPPLRALDDFVLGSARLAAPDPCDPQRWCHRVINNLLYYQTNYLLCFGIGLALAGYV 62
Query: 62 SPFNMILGGIVVVLVFTGFVWAAHNKDVLRRMKKRYPTTFVMVVMLASYFLISMFGGVMV 121
P + +L +VV + VWAA + +RR ++ +P + V+ ++ + GG
Sbjct: 63 RPLHTLLSALVVAVALGVLVWAAETRAAVRRCRRSHPAACLAAVLAVGLLVLWVAGGACT 122
Query: 122 FVFGITFPLLLMFIHASLRLRNLKNKLENKMEGIGLKRTPMGIVLDALEQQEE 174
F+F I P+LL+ +HASLRLRNLKNK+ENK+E IGLKRTPMG++L+AL Q++E
Sbjct: 123 FLFSIAGPVLLILVHASLRLRNLKNKIENKIESIGLKRTPMGLLLEALGQEQE 175
>gi|222144309 Rab acceptor 1 [Homo sapiens]
Length = 185
Score = 36.6 bits (83), Expect = 0.013
Identities = 35/151 (23%), Positives = 69/151 (45%), Gaps = 6/151 (3%)
Query: 6 APLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISIVGFLSPFN 65
A +R W F RF+RP R++ + R+V N+ YYQ+NY+ V +I SP
Sbjct: 40 ATIRPWSTFVD-QQRFSRP--RNLGELCQRLVRNVEYYQSNYVFVFLGLILYCVVTSPML 96
Query: 66 MILGGIVVVLVFTGFVWAAHNKDVLRRMKKRYPTTFVMVVMLA-SYFLISMFGGVMVFVF 124
++ + + ++ +K VL + + + ++ +F ++ G + +V
Sbjct: 97 LVALAVFFGACYILYLRTLESKLVLFGREVSPAHQYALAGGISFPFFWLAGAGSAVFWVL 156
Query: 125 GITFPLLLMFIHASLRLRNLKNKLENKMEGI 155
G T L+++ HA+ + E +ME +
Sbjct: 157 GAT--LVVIGSHAAFHQIEAVDGEELQMEPV 185
>gi|71979932 solute carrier family 7 (cationic amino acid
transporter, y+ system), member 5 [Homo sapiens]
Length = 507
Score = 30.4 bits (67), Expect = 0.94
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 11/82 (13%)
Query: 54 MISIVGFLSPFNMILGGIVVVLVFTGFVWAAHNKDVLRRMKK---RYPTTFVMVVMLASY 110
+ S++ F S FN + V L G +W H K L R K P F+ LA
Sbjct: 393 IFSVINFFSFFNWLC----VALAIIGMIWLRHRKPELERPIKVNLALPVFFI----LACL 444
Query: 111 FLISMFGGVMVFVFGITFPLLL 132
FLI++ GI F ++L
Sbjct: 445 FLIAVSFWKTPVECGIGFTIIL 466
>gi|6912668 solute carrier family 35 member 3A [Homo sapiens]
Length = 325
Score = 29.3 bits (64), Expect = 2.1
Identities = 21/83 (25%), Positives = 36/83 (43%)
Query: 54 MISIVGFLSPFNMILGGIVVVLVFTGFVWAAHNKDVLRRMKKRYPTTFVMVVMLASYFLI 113
++S GF +N + +VV+ G V AA K +K + +++ L SYF +
Sbjct: 230 LVSKNGFFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWL 289
Query: 114 SMFGGVMVFVFGITFPLLLMFIH 136
F VF G + F++
Sbjct: 290 QDFVPTSVFFLGAILVITATFLY 312
>gi|57165375 glutamate receptor, ionotropic, N-methyl
D-aspartate-associated protein 1 [Homo sapiens]
Length = 371
Score = 28.9 bits (63), Expect = 2.7
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 18/115 (15%)
Query: 25 DFRDISKWNNRVVSNLLYYQTNYLVVAAMMISIVGFLSPFNMILGGIVVVLVFTGFVWAA 84
DFR WN +S V+ A + +VG ++ F I+ V + T +
Sbjct: 219 DFRRKHPWNLVALS----------VLTASLSYMVGMIASFYNTEAVIMAVGITTAVCFTV 268
Query: 85 HNKDVLRRMKKRYPTTFVMVVMLASYFLISMFGGVMVFVFGITFPLLLMFIHASL 139
V+ M+ RY T M V+L S ++ +F + +F+ +L ++ASL
Sbjct: 269 ----VIFSMQTRYDFTSCMGVLLVSMVVLFIFAILCIFIRN----RILEIVYASL 315
>gi|57165373 glutamate receptor, ionotropic, N-methyl
D-aspartate-associated protein 1 [Homo sapiens]
Length = 371
Score = 28.9 bits (63), Expect = 2.7
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 18/115 (15%)
Query: 25 DFRDISKWNNRVVSNLLYYQTNYLVVAAMMISIVGFLSPFNMILGGIVVVLVFTGFVWAA 84
DFR WN +S V+ A + +VG ++ F I+ V + T +
Sbjct: 219 DFRRKHPWNLVALS----------VLTASLSYMVGMIASFYNTEAVIMAVGITTAVCFTV 268
Query: 85 HNKDVLRRMKKRYPTTFVMVVMLASYFLISMFGGVMVFVFGITFPLLLMFIHASL 139
V+ M+ RY T M V+L S ++ +F + +F+ +L ++ASL
Sbjct: 269 ----VIFSMQTRYDFTSCMGVLLVSMVVLFIFAILCIFIRN----RILEIVYASL 315
>gi|4506813 sodium channel, voltage-gated, type IX, alpha [Homo
sapiens]
Length = 1977
Score = 28.5 bits (62), Expect = 3.6
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 82 WAAHNKDVLRRMKKRYPTTFVMVVMLASYFLISMFGGVMVFVF 124
W + LR K Y FV+V+ L S++LI++ V+ +
Sbjct: 363 WENLYQQTLRAAGKTYMIFFVVVIFLGSFYLINLILAVVAMAY 405
>gi|52317168 olfactory receptor, family 1, subfamily S, member 2
[Homo sapiens]
Length = 325
Score = 28.5 bits (62), Expect = 3.6
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 21/113 (18%)
Query: 26 FRDISKWNNRVVSNLLYYQTN-----YLVVAAMMISIVGFLSPFNMILGGIVVVLVFTGF 80
F DIS +N V L+ QTN Y M + F+ N++LG + F F
Sbjct: 81 FADISSISNSVPKMLVNIQTNSQSISYESCITQMYFSIVFVVTDNLLLG----TMAFDHF 136
Query: 81 VWAAHNKDVLRRMKKRYPTTFVMVVMLASYFLISMFGGVMVFVFGITFPLLLM 133
V H + M+ R+ T ++ S+FL + + +T LLL+
Sbjct: 137 VAICHPLNYTTFMRARFGTLLTVI----SWFLSN--------IIALTHTLLLI 177
>gi|239749916 PREDICTED: hypothetical protein XP_002347212 [Homo
sapiens]
Length = 391
Score = 27.7 bits (60), Expect = 6.1
Identities = 24/104 (23%), Positives = 51/104 (49%), Gaps = 8/104 (7%)
Query: 36 VVSNLLYYQTNYLVVAAMMISIVGFLSPFNMILGGIVVVLVFTGFVWAAHNKDVLRRMKK 95
V+++L T+ ++V +++++ +P +++ +VVV+ T V + V+
Sbjct: 107 VITSLGVVVTSLVMVITPLVAVI---TPLGVVITSLVVVI--TSLVMVITSLTVVITSSI 161
Query: 96 RYPTTFVMVVMLASYFLISMFGGVMVFVFGITFPLLLMFIHASL 139
T VMV+ + + S+F + V ITF L+ ++ SL
Sbjct: 162 VVITPLVMVITSLTVIITSLFVVITPLVMVITF---LIVVNTSL 202
>gi|239744219 PREDICTED: hypothetical protein XP_002343076 [Homo
sapiens]
Length = 398
Score = 27.7 bits (60), Expect = 6.1
Identities = 24/104 (23%), Positives = 51/104 (49%), Gaps = 8/104 (7%)
Query: 36 VVSNLLYYQTNYLVVAAMMISIVGFLSPFNMILGGIVVVLVFTGFVWAAHNKDVLRRMKK 95
V+++L T+ ++V +++++ +P +++ +VVV+ T V + V+
Sbjct: 114 VITSLGVVVTSLVMVITPLVAVI---TPLGVVITSLVVVI--TSLVMVITSLTVVITSSI 168
Query: 96 RYPTTFVMVVMLASYFLISMFGGVMVFVFGITFPLLLMFIHASL 139
T VMV+ + + S+F + V ITF L+ ++ SL
Sbjct: 169 VVITPLVMVITSLTVIITSLFVVITPLVMVITF---LIVVNTSL 209
>gi|125988395 jumonji domain containing 6 isoform 1 [Homo sapiens]
Length = 414
Score = 27.7 bits (60), Expect = 6.1
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 17/88 (19%)
Query: 20 RFARPDFRDISKWNNRVVSNLLYYQTNYLVVAA----------MMISIVGFLSPFNMILG 69
R ARP+ +D W YY++ L AA + +S+ F+ +
Sbjct: 14 RSARPELKDSLDWTRHN-----YYESFSLSPAAVADNVERADALQLSVEEFVERYERPYK 68
Query: 70 GIVVVLVFTGFVWAAHNKDVLRRMKKRY 97
+V++ G W+A K L R+K++Y
Sbjct: 69 PVVLLNAQEG--WSAQEKWTLERLKRKY 94
>gi|125988389 jumonji domain containing 6 isoform 2 [Homo sapiens]
Length = 403
Score = 27.7 bits (60), Expect = 6.1
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 17/88 (19%)
Query: 20 RFARPDFRDISKWNNRVVSNLLYYQTNYLVVAA----------MMISIVGFLSPFNMILG 69
R ARP+ +D W YY++ L AA + +S+ F+ +
Sbjct: 14 RSARPELKDSLDWTRHN-----YYESFSLSPAAVADNVERADALQLSVEEFVERYERPYK 68
Query: 70 GIVVVLVFTGFVWAAHNKDVLRRMKKRY 97
+V++ G W+A K L R+K++Y
Sbjct: 69 PVVLLNAQEG--WSAQEKWTLERLKRKY 94
>gi|21264583 transmembrane 4 superfamily member 9 [Homo sapiens]
Length = 268
Score = 27.7 bits (60), Expect = 6.1
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 9/59 (15%)
Query: 66 MILGGIVVVLVFTGFVWAAHNKDVLRRMKKRYPTTFVMVVMLASYFLISMFGGVMVFVF 124
+++GG++ +L F G + A L + V L F + + GV+ FVF
Sbjct: 66 LVVGGVMFILGFAGCIGALRENTFLLKF---------FSVFLGIIFFLELTAGVLAFVF 115
>gi|115583677 sodium channel, voltage-gated, type I, alpha [Homo
sapiens]
Length = 1998
Score = 27.3 bits (59), Expect = 7.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 90 LRRMKKRYPTTFVMVVMLASYFLISMFGGVMVFVF 124
LR K Y FV+V+ L S++LI++ V+ +
Sbjct: 392 LRAAGKTYMIFFVLVIFLGSFYLINLILAVVAMAY 426
>gi|93141214 sodium channel, voltage-gated, type II, alpha isoform 2
[Homo sapiens]
Length = 2005
Score = 27.3 bits (59), Expect = 7.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 90 LRRMKKRYPTTFVMVVMLASYFLISMFGGVMVFVF 124
LR K Y FV+V+ L S++LI++ V+ +
Sbjct: 394 LRAAGKTYMIFFVLVIFLGSFYLINLILAVVAMAY 428
>gi|93141212 sodium channel, voltage-gated, type II, alpha isoform 1
[Homo sapiens]
Length = 2005
Score = 27.3 bits (59), Expect = 7.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 90 LRRMKKRYPTTFVMVVMLASYFLISMFGGVMVFVF 124
LR K Y FV+V+ L S++LI++ V+ +
Sbjct: 394 LRAAGKTYMIFFVLVIFLGSFYLINLILAVVAMAY 428
>gi|93141210 sodium channel, voltage-gated, type II, alpha isoform 1
[Homo sapiens]
Length = 2005
Score = 27.3 bits (59), Expect = 7.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 90 LRRMKKRYPTTFVMVVMLASYFLISMFGGVMVFVF 124
LR K Y FV+V+ L S++LI++ V+ +
Sbjct: 394 LRAAGKTYMIFFVLVIFLGSFYLINLILAVVAMAY 428
>gi|40254947 thioredoxin-related transmembrane protein 4 [Homo
sapiens]
Length = 349
Score = 27.3 bits (59), Expect = 7.9
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 14/79 (17%)
Query: 57 IVGFLSPFNMILGGIVVVLVFTGFVWAAHNKDVLRRMKKRYPTTFVMVVMLASYFLISMF 116
+ G+ SP ++ + G+ + +G +W HN Y T + + SY +F
Sbjct: 146 LTGWKSPASLTMSGMAGLFSISGKIWHLHN----------YFTVTLGIPAWCSY----VF 191
Query: 117 GGVMVFVFGITFPLLLMFI 135
+ VFG+ L+L+ I
Sbjct: 192 FVIATLVFGLFMGLVLVVI 210
>gi|67191208 ubiquitin C [Homo sapiens]
Length = 685
Score = 27.3 bits (59), Expect = 7.9
Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 110 YFLISMFGGVMVFVFGITFPLLLMFIHASLRLRNLKNKLENKMEGIGLKRTPMGIVLDAL 169
+ ++ + GG+ +FV +T + + + S + N+K K+++K EGI + + + A
Sbjct: 144 HLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-EGIPSDQQRL---IFAG 199
Query: 170 EQQEEGINRLTDY 182
+Q E+G L+DY
Sbjct: 200 KQLEDG-RTLSDY 211
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.330 0.144 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,024,458
Number of Sequences: 37866
Number of extensions: 212511
Number of successful extensions: 815
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 795
Number of HSP's gapped (non-prelim): 32
length of query: 188
length of database: 18,247,518
effective HSP length: 96
effective length of query: 92
effective length of database: 14,612,382
effective search space: 1344339144
effective search space used: 1344339144
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Search text |
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.