Guide to the Human Genome
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Name: ARL6IP5 Sequence: fasta or formatted (188aa) NCBI GI: 5453704
Description:

ADP-ribosylation-like factor 6 interacting protein 5

Referenced in:

ADP-Ribosylation Factors
Glutamate

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         10           2
 C cysteine            0.0          0           0
 D aspartate           4.8          9           2
 E glutamate           3.2          6           2
 F phenylalanine       8.0         15           2
 G glycine             6.4         12           2
 H histidine           1.1          2           1
 I isoleucine          6.9         13           1
 K lysine              5.3         10           2
 L leucine            11.2         21           3
 M methionine          6.4         12           2
 N asparagine          5.9         11           2
 P proline             3.7          7           1
 Q glutamine           1.6          3           2
 R arginine            6.4         12           2
 S serine              4.8          9           1
 T threonine           3.7          7           2
 V valine             10.6         20           3
 W tryptophan          1.6          3           1
 Y tyrosine            3.2          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ADP-ribosylation-like factor 6 interacting protein 5 ... 
PRAF2                 0.406   PRA1 domain family, member 2 
RABAC1                0.034   Rab acceptor 1 
SLC7A5                0.014   solute carrier family 7 (cationic amino acid transpo...
SLC35A3               0.011   solute carrier family 35 member 3A 
GRINA                 0.011   glutamate receptor, ionotropic, N-methyl D-aspartate...
GRINA                 0.011   glutamate receptor, ionotropic, N-methyl D-aspartate...
SCN9A                 0.009   sodium channel, voltage-gated, type IX, alpha 
OR1S2                 0.009   olfactory receptor, family 1, subfamily S, member 2 ...
LOC100289996          0.009   PREDICTED: hypothetical protein XP_002347212 
LOC100287396          0.009   PREDICTED: hypothetical protein XP_002343076 
JMJD6                 0.009   jumonji domain containing 6 isoform 1 
JMJD6                 0.009   jumonji domain containing 6 isoform 2 
TSPAN5                0.009   transmembrane 4 superfamily member 9 
SCN1A                 0.006   sodium channel, voltage-gated, type I, alpha 
SCN2A                 0.006   sodium channel, voltage-gated, type II, alpha isofor...
SCN2A                 0.006   sodium channel, voltage-gated, type II, alpha isofor...
SCN2A                 0.006   sodium channel, voltage-gated, type II, alpha isofor...
TMX4                  0.006   thioredoxin-related transmembrane protein 4 
UBC                   0.006   ubiquitin C 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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