Guide to the Human Genome
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Name: OR1S2 Sequence: fasta or formatted (325aa) NCBI GI: 52317168
Description:

olfactory receptor, family 1, subfamily S, member 2

Referenced in:

Olfactory Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         14           1
 C cysteine            2.5          8           1
 D aspartate           3.1         10           1
 E glutamate           1.8          6           1
 F phenylalanine       8.3         27           2
 G glycine             4.0         13           1
 H histidine           3.1         10           1
 I isoleucine          9.2         30           2
 K lysine              3.1         10           1
 L leucine            14.5         47           3
 M methionine          3.7         12           2
 N asparagine          4.9         16           1
 P proline             3.1         10           1
 Q glutamine           3.1         10           1
 R arginine            2.2          7           1
 S serine              9.2         30           2
 T threonine           8.3         27           2
 V valine              7.7         25           2
 W tryptophan          0.6          2           1
 Y tyrosine            3.4         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   olfactory receptor, family 1, subfamily S, member 2 ... 
OR1S1                 0.908   olfactory receptor, family 1, subfamily S, member 1 ...
OR1J4                 0.525   olfactory receptor, family 1, subfamily J, member 4 ...
OR1F1                 0.520   olfactory receptor, family 1, subfamily F, member 1 [...
OR1M1                 0.515   olfactory receptor, family 1, subfamily M, member 1 ...
OR1N2                 0.499   olfactory receptor, family 1, subfamily N, member 2 ...
OR1J2                 0.499   olfactory receptor, family 1, subfamily J, member 2 ...
OR1N1                 0.498   olfactory receptor, family 1, subfamily N, member 1 ...
OR7D4                 0.491   olfactory receptor, family 7, subfamily D, member 4 ...
OR1E1                 0.488   olfactory receptor, family 1, subfamily E, member 1...
OR1J1                 0.485   olfactory receptor, family 1, subfamily J, member 1 ...
OR7D2                 0.473   olfactory receptor, family 7, subfamily D, member 2 ...
OR1E2                 0.473   olfactory receptor, family 1, subfamily E, member 2 ...
OR7C2                 0.472   olfactory receptor, family 7, subfamily C, member 2 ...
OR7A10                0.465   olfactory receptor, family 7, subfamily A, member 10...
OR1C1                 0.464   olfactory receptor, family 1, subfamily C, member 1...
OR7G3                 0.460   olfactory receptor, family 7, subfamily G, member 3 ...
OR1D2                 0.460   olfactory receptor, family 1, subfamily D, member 2 [...
OR7A17                0.457   olfactory receptor, family 7, subfamily A, member 17...
OR1I1                 0.457   olfactory receptor, family 1, subfamily I, member 1 ...
OR7C1                 0.454   olfactory receptor, family 7, subfamily C, member 1 ...
OR1G1                 0.451   olfactory receptor, family 1, subfamily G, member 1 ...
OR1L1                 0.446   olfactory receptor, family 1, subfamily L, member 1...
OR1L6                 0.441   olfactory receptor, family 1, subfamily L, member 6 ...
OR7A5                 0.438   olfactory receptor, family 7, subfamily A, member 5 [...
OR1A1                 0.436   olfactory receptor, family 1, subfamily A, member 1 [...
OR7E24                0.435   olfactory receptor, family 7, subfamily E, member 2...
OR1L4                 0.433   olfactory receptor, family 1, subfamily L, member 4 ...
OR1L3                 0.430   olfactory receptor, family 1, subfamily L, member 3 ...
OR1L8                 0.425   olfactory receptor, family 1, subfamily L, member 8 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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