Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PRAF2 Sequence: fasta or formatted (178aa) NCBI GI: 6005794
Description:

PRA1 domain family, member 2

Referenced in:

ADP-Ribosylation Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.5         24           2
 C cysteine            3.4          6           1
 D aspartate           2.2          4           2
 E glutamate           3.9          7           1
 F phenylalanine       2.2          4           1
 G glycine             7.3         13           2
 H histidine           2.2          4           1
 I isoleucine          3.9          7           1
 K lysine              2.2          4           1
 L leucine            19.1         34           3
 M methionine          1.1          2           1
 N asparagine          3.4          6           2
 P proline             5.1          9           2
 Q glutamine           2.2          4           1
 R arginine            7.9         14           2
 S serine              4.5          8           1
 T threonine           2.8          5           1
 V valine              9.0         16           2
 W tryptophan          1.7          3           1
 Y tyrosine            2.2          4           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PRA1 domain family, member 2 
ARL6IP5               0.432   ADP-ribosylation-like factor 6 interacting protein 5 ...
RABAC1                0.040   Rab acceptor 1 
GJD3                  0.018   gap junction protein, delta 3, 31.9kDa 
MIP                   0.012   major intrinsic protein of lens fiber 
OR4A47                0.009   olfactory receptor, family 4, subfamily A, member 4...
OPRL1                 0.009   opiate receptor-like 1 
OPRL1                 0.009   opiate receptor-like 1 
OR51Q1                0.009   olfactory receptor, family 51, subfamily Q, member 1...
UBB                   0.006   ubiquitin B precursor 
UBC                   0.006   ubiquitin C 
GDPD3                 0.006   glycerophosphodiester phosphodiesterase domain cont...
CYTB                  0.006   cytochrome b 
ATP8A2                0.006   ATPase, aminophospholipid transporter-like, Class I...
RPUSD1                0.006   RNA pseudouridylate synthase domain containing 1 [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press