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Search of human proteins with 53988385
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|53988385 tweety 2 isoform 1 [Homo sapiens]
(534 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|53988385 tweety 2 isoform 1 [Homo sapiens] 1085 0.0
gi|53988387 tweety 2 isoform 2 [Homo sapiens] 439 e-123
gi|51100978 tweety 3 [Homo sapiens] 402 e-112
gi|10257437 tweety 1 isoform 1 [Homo sapiens] 362 e-100
gi|53831989 tweety 1 isoform 2 [Homo sapiens] 340 1e-93
gi|224994189 prominin 1 isoform 2 [Homo sapiens] 34 0.38
gi|224994199 prominin 1 isoform 4 [Homo sapiens] 34 0.38
gi|224994197 prominin 1 isoform 5 [Homo sapiens] 34 0.38
gi|224994195 prominin 1 isoform 6 [Homo sapiens] 34 0.38
gi|224994193 prominin 1 isoform 7 [Homo sapiens] 34 0.38
gi|224994191 prominin 1 isoform 2 [Homo sapiens] 34 0.38
gi|5174387 prominin 1 isoform 1 [Homo sapiens] 34 0.38
gi|116268109 nucleotide-binding oligomerization domains 27 [Homo... 34 0.38
gi|33286442 BCL6 co-repressor-like 1 [Homo sapiens] 33 0.50
gi|91208420 bassoon protein [Homo sapiens] 33 0.85
gi|4827022 contactin 2 precursor [Homo sapiens] 32 1.5
gi|227499621 solute carrier family 27 (fatty acid transporter), ... 32 1.9
gi|227499619 solute carrier family 27 (fatty acid transporter), ... 32 1.9
gi|219842298 brain-derived neurotrophic factor isoform e [Homo s... 31 3.2
gi|130492454 zinc finger RNA binding protein 2 isoform 1 [Homo s... 31 3.2
gi|22749279 zinc finger protein 366 [Homo sapiens] 30 7.2
gi|41352705 kinesin family member 3C [Homo sapiens] 30 7.2
gi|14589916 protocadherin 10 isoform 1 precursor [Homo sapiens] 29 9.4
gi|14589914 protocadherin 10 isoform 2 precursor [Homo sapiens] 29 9.4
gi|21389623 prominin 2 [Homo sapiens] 29 9.4
>gi|53988385 tweety 2 isoform 1 [Homo sapiens]
Length = 534
Score = 1085 bits (2807), Expect = 0.0
Identities = 534/534 (100%), Positives = 534/534 (100%)
Query: 1 MQAARVDYIAPWWVVWLHSVPHVGLRLQPVNSTFSPGDESYQESLLFLGLVAAVCLGLNL 60
MQAARVDYIAPWWVVWLHSVPHVGLRLQPVNSTFSPGDESYQESLLFLGLVAAVCLGLNL
Sbjct: 1 MQAARVDYIAPWWVVWLHSVPHVGLRLQPVNSTFSPGDESYQESLLFLGLVAAVCLGLNL 60
Query: 61 IFLVAYLVCACHCRRDDAVQTKQHHSCCITWTAVVAGLICCAAVGVGFYGNSETNDGAYQ 120
IFLVAYLVCACHCRRDDAVQTKQHHSCCITWTAVVAGLICCAAVGVGFYGNSETNDGAYQ
Sbjct: 61 IFLVAYLVCACHCRRDDAVQTKQHHSCCITWTAVVAGLICCAAVGVGFYGNSETNDGAYQ 120
Query: 121 LMYSLDDANHTFSGIDALVSGTTQKMKVDLEQHLARLSEIFAARGDYLQTLKFIQQMAGS 180
LMYSLDDANHTFSGIDALVSGTTQKMKVDLEQHLARLSEIFAARGDYLQTLKFIQQMAGS
Sbjct: 121 LMYSLDDANHTFSGIDALVSGTTQKMKVDLEQHLARLSEIFAARGDYLQTLKFIQQMAGS 180
Query: 181 VVVQLSGLPVWREVTMELTKLSDQTGYVEYYRWLSYLLLFILDLVICLIACLGLAKRSKC 240
VVVQLSGLPVWREVTMELTKLSDQTGYVEYYRWLSYLLLFILDLVICLIACLGLAKRSKC
Sbjct: 181 VVVQLSGLPVWREVTMELTKLSDQTGYVEYYRWLSYLLLFILDLVICLIACLGLAKRSKC 240
Query: 241 LLASMLCCGALSLLLSWASLAADGSAAVATSDFCVAPDTFILNVTEGQISTEVTRYYLYC 300
LLASMLCCGALSLLLSWASLAADGSAAVATSDFCVAPDTFILNVTEGQISTEVTRYYLYC
Sbjct: 241 LLASMLCCGALSLLLSWASLAADGSAAVATSDFCVAPDTFILNVTEGQISTEVTRYYLYC 300
Query: 301 SQSGSSPFQQTLTTFQRALTTMQIQVAGLLQFAVPLFSTAEEDLLAIQLLLNSSESSLHQ 360
SQSGSSPFQQTLTTFQRALTTMQIQVAGLLQFAVPLFSTAEEDLLAIQLLLNSSESSLHQ
Sbjct: 301 SQSGSSPFQQTLTTFQRALTTMQIQVAGLLQFAVPLFSTAEEDLLAIQLLLNSSESSLHQ 360
Query: 361 LTAMVDCRGLHKDYLDALAGICYDGLQGLLYLGLFSFLAALAFSTMICAGPRAWKHFTTR 420
LTAMVDCRGLHKDYLDALAGICYDGLQGLLYLGLFSFLAALAFSTMICAGPRAWKHFTTR
Sbjct: 361 LTAMVDCRGLHKDYLDALAGICYDGLQGLLYLGLFSFLAALAFSTMICAGPRAWKHFTTR 420
Query: 421 NRDYDDIDDDDPFNPQAWRMAAHSPPRGQLHSFCSYSSGLGSQTSLQPPAQTISNAPVSE 480
NRDYDDIDDDDPFNPQAWRMAAHSPPRGQLHSFCSYSSGLGSQTSLQPPAQTISNAPVSE
Sbjct: 421 NRDYDDIDDDDPFNPQAWRMAAHSPPRGQLHSFCSYSSGLGSQTSLQPPAQTISNAPVSE 480
Query: 481 YMNQAMLFGRNPRYENVPLIGRASPPPTYSPSMRATYLSVADEHLRHYGNQFPA 534
YMNQAMLFGRNPRYENVPLIGRASPPPTYSPSMRATYLSVADEHLRHYGNQFPA
Sbjct: 481 YMNQAMLFGRNPRYENVPLIGRASPPPTYSPSMRATYLSVADEHLRHYGNQFPA 534
>gi|53988387 tweety 2 isoform 2 [Homo sapiens]
Length = 213
Score = 439 bits (1128), Expect = e-123
Identities = 213/213 (100%), Positives = 213/213 (100%)
Query: 322 MQIQVAGLLQFAVPLFSTAEEDLLAIQLLLNSSESSLHQLTAMVDCRGLHKDYLDALAGI 381
MQIQVAGLLQFAVPLFSTAEEDLLAIQLLLNSSESSLHQLTAMVDCRGLHKDYLDALAGI
Sbjct: 1 MQIQVAGLLQFAVPLFSTAEEDLLAIQLLLNSSESSLHQLTAMVDCRGLHKDYLDALAGI 60
Query: 382 CYDGLQGLLYLGLFSFLAALAFSTMICAGPRAWKHFTTRNRDYDDIDDDDPFNPQAWRMA 441
CYDGLQGLLYLGLFSFLAALAFSTMICAGPRAWKHFTTRNRDYDDIDDDDPFNPQAWRMA
Sbjct: 61 CYDGLQGLLYLGLFSFLAALAFSTMICAGPRAWKHFTTRNRDYDDIDDDDPFNPQAWRMA 120
Query: 442 AHSPPRGQLHSFCSYSSGLGSQTSLQPPAQTISNAPVSEYMNQAMLFGRNPRYENVPLIG 501
AHSPPRGQLHSFCSYSSGLGSQTSLQPPAQTISNAPVSEYMNQAMLFGRNPRYENVPLIG
Sbjct: 121 AHSPPRGQLHSFCSYSSGLGSQTSLQPPAQTISNAPVSEYMNQAMLFGRNPRYENVPLIG 180
Query: 502 RASPPPTYSPSMRATYLSVADEHLRHYGNQFPA 534
RASPPPTYSPSMRATYLSVADEHLRHYGNQFPA
Sbjct: 181 RASPPPTYSPSMRATYLSVADEHLRHYGNQFPA 213
>gi|51100978 tweety 3 [Homo sapiens]
Length = 523
Score = 402 bits (1034), Expect = e-112
Identities = 217/521 (41%), Positives = 310/521 (59%), Gaps = 12/521 (2%)
Query: 4 ARVDYIAPWWVVWLHSVPHVGLRLQPVNSTFSPGDESYQESLLFLGLVAAVCLGLNLIFL 63
A V Y APWWV LH +PH L + +S F P D YQ++LL LG A CL L+L+FL
Sbjct: 2 AGVSYAAPWWVSLLHRLPHFDLSWEATSSQFRPEDTDYQQALLLLGAAALACLALDLLFL 61
Query: 64 VAYLVCACHCRRDDAVQTKQHHSCCITWTAVVAGLICCAAVGVGFYGNSETNDGAYQLMY 123
+ Y C CRR + + CC W ++A L+C A + VGFYGN ET+DG ++ Y
Sbjct: 62 LFYSFWLC-CRRRKSEEHLDADCCCTAWCVIIATLVCSAGIAVGFYGNGETSDGIHRATY 120
Query: 124 SLDDANHTFSGIDALVSGTTQKMKVDLEQHLARLSEIFAARGDYLQTLKFIQQMAGSVVV 183
SL AN T +G+ V T + E L L A R + L+ ++ +Q + +++
Sbjct: 121 SLRHANRTVAGVQDRVWDTAVGLNHTAEPSLQTLERQLAGRPEPLRAVQRLQGLLETLLG 180
Query: 184 QLSGLPVWREVTMELTKLSDQTGYVEYYRWLSYLLLFILDLVICLIACLGLAKRSKCLLA 243
+ +P WR + L L++Q ++YRWL YL L +LD++ICL+ +GL + SK +L
Sbjct: 181 YTAAIPFWRNTAVSLEVLAEQVDLYDWYRWLGYLGLLLLDVIICLLVLVGLIRSSKGILV 240
Query: 244 SMLCCGALSLLLSWASLAADGSAAVATSDFCVAPDTFILNVTE--GQISTEVTRYYLYCS 301
+ G L+L++SW +L + + +V +SDFCV PD ++ + E +S ++ +YYL CS
Sbjct: 241 GVCLLGVLALVISWGALGLELAVSVGSSDFCVDPDAYVTKMVEEYSVLSGDILQYYLACS 300
Query: 302 QSGSSPFQQTLTTFQRALTTMQIQVAGLLQFAVPLFSTAEED-LLAIQLLLNSSESSLHQ 360
++PFQQ L+ +AL MQ VA LL+ VP A +D LL +Q +LN +E +L
Sbjct: 301 PRAANPFQQKLSGSHKALVEMQDVVAELLR-TVPWEQPATKDPLLRVQEVLNGTEVNLQH 359
Query: 361 LTAMVDCRGLHKDYLDALAGICYDGLQGLLYLGLFSFLAALAFSTMICAGPRAWKHFTTR 420
LTA+VDCR LH DY+ AL G CYDG++GL+YL LFSF+ AL FS+++C+ P W+ R
Sbjct: 360 LTALVDCRSLHLDYVQALTGFCYDGVEGLIYLALFSFVTALMFSSIVCSVPHTWQQ--KR 417
Query: 421 NRDYDDIDDDDPFNPQAWRMAAHSPPRGQLHSFCSYSSGLGSQTSLQPPAQTISNAPVSE 480
D D ++ P R A S R + S S S GS+TS+ A T+SNAPV+E
Sbjct: 418 GPDEDGEEEAAP----GPRQAHDSLYRVHMPSLYSCGSSYGSETSIPAAAHTVSNAPVTE 473
Query: 481 YMNQAMLFGRNPRYENVPLIGRASPPPTYSPSMRATYLSVA 521
YM+Q F +NPR EN PLIGR SPPP+Y+ SMRA YL+ +
Sbjct: 474 YMSQNANF-QNPRCENTPLIGRESPPPSYTSSMRAKYLATS 513
>gi|10257437 tweety 1 isoform 1 [Homo sapiens]
Length = 450
Score = 362 bits (929), Expect = e-100
Identities = 185/428 (43%), Positives = 272/428 (63%), Gaps = 5/428 (1%)
Query: 13 WVVWLHSVPHVGLRLQPVNSTFSPGDESYQESLLFLGLVAAVCLGLNLIFLVAYLVCACH 72
WV LH +P +L+PV S F+P ++ YQ++LL + +A + LGL+LIF+ YL+ C
Sbjct: 12 WVHLLHQLPRADFQLRPVPSVFAPQEQEYQQALLLVAALAGLGLGLSLIFIAVYLIRFCC 71
Query: 73 CRRDDAVQTK--QHHSCCITWTAVVAGLICCAAVGVGFYGNSETNDGAYQLMYSLDDANH 130
CR + +K C+TW+ +VA L C +G+GFYGNSET+DG QL +L ANH
Sbjct: 72 CRPPEPPGSKIPSPGGGCVTWSCIVALLAGCTGIGIGFYGNSETSDGVSQLSSALLHANH 131
Query: 131 TFSGIDALVSGTTQKMKVDLEQHLARLSEIFAARGDYLQTLKFIQQMAGSVVVQLSGLPV 190
T S ID LV T +++ + L L E+ R + + + ++ A + QL GL
Sbjct: 132 TLSTIDHLVLETVERLGEAVRTELTTLEEVLEPRTELVAAARGARRQAEAAAQQLQGLAF 191
Query: 191 WREVTMELTKLSDQTGYVEYYRWLSYLLLFILDLVICLIACLGLAKRSKCLLASMLCCGA 250
W+ V + ++++ +VE YRWL+Y+LL +L+L++CL LGLAK+SK L+ M
Sbjct: 192 WQGVPLSPLQVAENVSFVEEYRWLAYVLLLLLELLVCLFTLLGLAKQSKWLVIVMTVMSL 251
Query: 251 LSLLLSWASLAADGSAAVATSDFCVAPDTFILNVTEGQ--ISTEVTRYYLYCSQSGSSPF 308
L L+LSW S+ + + AV SDFC PD ++LN+T+ + +S+++ YYL C+++ S+PF
Sbjct: 252 LVLVLSWGSMGLEAATAVGLSDFCSNPDPYVLNLTQEETGLSSDILSYYLLCNRAVSNPF 311
Query: 309 QQTLTTFQRALTTMQIQVAGLLQFAVPLFSTAEEDLLAIQLLLNSSESSLHQLTAMVDCR 368
QQ LT QRAL + Q+ GL + AVP F +A++ LL+++ LN +E + HQL A++ CR
Sbjct: 312 QQRLTLSQRALANIHSQLLGLEREAVPQFPSAQKPLLSLEETLNVTEGNFHQLVALLHCR 371
Query: 369 GLHKDYLDALAGICYDGLQGLLYLGLFSFLAALAFSTMICAGPRAWKHFTTRNRDYDDID 428
LHKDY AL G+C D L+GLL+L LFS L+A A +T +C+ PRAW F + DYDD D
Sbjct: 372 SLHKDYGAALRGLCEDALEGLLFLLLFSLLSAGALATALCSLPRAWALFPPSD-DYDDTD 430
Query: 429 DDDPFNPQ 436
DDDPFNPQ
Sbjct: 431 DDDPFNPQ 438
>gi|53831989 tweety 1 isoform 2 [Homo sapiens]
Length = 460
Score = 340 bits (873), Expect = 1e-93
Identities = 174/413 (42%), Positives = 260/413 (62%), Gaps = 4/413 (0%)
Query: 13 WVVWLHSVPHVGLRLQPVNSTFSPGDESYQESLLFLGLVAAVCLGLNLIFLVAYLVCACH 72
WV LH +P +L+PV S F+P ++ YQ++LL + +A + LGL+LIF+ YL+ C
Sbjct: 12 WVHLLHQLPRADFQLRPVPSVFAPQEQEYQQALLLVAALAGLGLGLSLIFIAVYLIRFCC 71
Query: 73 CRRDDAVQTK--QHHSCCITWTAVVAGLICCAAVGVGFYGNSETNDGAYQLMYSLDDANH 130
CR + +K C+TW+ +VA L C +G+GFYGNSET+DG QL +L ANH
Sbjct: 72 CRPPEPPGSKIPSPGGGCVTWSCIVALLAGCTGIGIGFYGNSETSDGVSQLSSALLHANH 131
Query: 131 TFSGIDALVSGTTQKMKVDLEQHLARLSEIFAARGDYLQTLKFIQQMAGSVVVQLSGLPV 190
T S ID LV T +++ + L L E+ R + + + ++ A + QL GL
Sbjct: 132 TLSTIDHLVLETVERLGEAVRTELTTLEEVLEPRTELVAAARGARRQAEAAAQQLQGLAF 191
Query: 191 WREVTMELTKLSDQTGYVEYYRWLSYLLLFILDLVICLIACLGLAKRSKCLLASMLCCGA 250
W+ V + ++++ +VE YRWL+Y+LL +L+L++CL LGLAK+SK L+ M
Sbjct: 192 WQGVPLSPLQVAENVSFVEEYRWLAYVLLLLLELLVCLFTLLGLAKQSKWLVIVMTVMSL 251
Query: 251 LSLLLSWASLAADGSAAVATSDFCVAPDTFILNVTEGQ--ISTEVTRYYLYCSQSGSSPF 308
L L+LSW S+ + + AV SDFC PD ++LN+T+ + +S+++ YYL C+++ S+PF
Sbjct: 252 LVLVLSWGSMGLEAATAVGLSDFCSNPDPYVLNLTQEETGLSSDILSYYLLCNRAVSNPF 311
Query: 309 QQTLTTFQRALTTMQIQVAGLLQFAVPLFSTAEEDLLAIQLLLNSSESSLHQLTAMVDCR 368
QQ LT QRAL + Q+ GL + AVP F +A++ LL+++ LN +E + HQL A++ CR
Sbjct: 312 QQRLTLSQRALANIHSQLLGLEREAVPQFPSAQKPLLSLEETLNVTEGNFHQLVALLHCR 371
Query: 369 GLHKDYLDALAGICYDGLQGLLYLGLFSFLAALAFSTMICAGPRAWKHFTTRN 421
LHKDY AL G+C D L+GLL+L LFS L+A A +T +C+ PRAW F RN
Sbjct: 372 SLHKDYGAALRGLCEDALEGLLFLLLFSLLSAGALATALCSLPRAWALFPPRN 424
>gi|224994189 prominin 1 isoform 2 [Homo sapiens]
Length = 856
Score = 33.9 bits (76), Expect = 0.38
Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 7/112 (6%)
Query: 49 GLVAAVCLGLNLIFL---VAYLVCACHCRR---DDAVQTKQHHSCCITWTAVVAGLICCA 102
G++ LGL I L V Y C C C + Q ++ + + ++ L+ C
Sbjct: 99 GIILCCVLGLLFIILMPLVGYFFCMCRCCNKCGGEMHQRQKENGPFLRKCFAISLLVICI 158
Query: 103 AVGVG-FYGNSETNDGAYQLMYSLDDANHTFSGIDALVSGTTQKMKVDLEQH 153
+ +G FYG + ++ S A+ F + L++ T +++K L Q+
Sbjct: 159 IISIGIFYGFVANHQVRTRIKRSRKLADSNFKDLRTLLNETPEQIKYILAQY 210
>gi|224994199 prominin 1 isoform 4 [Homo sapiens]
Length = 825
Score = 33.9 bits (76), Expect = 0.38
Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 7/112 (6%)
Query: 49 GLVAAVCLGLNLIFL---VAYLVCACHCRR---DDAVQTKQHHSCCITWTAVVAGLICCA 102
G++ LGL I L V Y C C C + Q ++ + + ++ L+ C
Sbjct: 99 GIILCCVLGLLFIILMPLVGYFFCMCRCCNKCGGEMHQRQKENGPFLRKCFAISLLVICI 158
Query: 103 AVGVG-FYGNSETNDGAYQLMYSLDDANHTFSGIDALVSGTTQKMKVDLEQH 153
+ +G FYG + ++ S A+ F + L++ T +++K L Q+
Sbjct: 159 IISIGIFYGFVANHQVRTRIKRSRKLADSNFKDLRTLLNETPEQIKYILAQY 210
>gi|224994197 prominin 1 isoform 5 [Homo sapiens]
Length = 833
Score = 33.9 bits (76), Expect = 0.38
Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 7/112 (6%)
Query: 49 GLVAAVCLGLNLIFL---VAYLVCACHCRR---DDAVQTKQHHSCCITWTAVVAGLICCA 102
G++ LGL I L V Y C C C + Q ++ + + ++ L+ C
Sbjct: 99 GIILCCVLGLLFIILMPLVGYFFCMCRCCNKCGGEMHQRQKENGPFLRKCFAISLLVICI 158
Query: 103 AVGVG-FYGNSETNDGAYQLMYSLDDANHTFSGIDALVSGTTQKMKVDLEQH 153
+ +G FYG + ++ S A+ F + L++ T +++K L Q+
Sbjct: 159 IISIGIFYGFVANHQVRTRIKRSRKLADSNFKDLRTLLNETPEQIKYILAQY 210
>gi|224994195 prominin 1 isoform 6 [Homo sapiens]
Length = 834
Score = 33.9 bits (76), Expect = 0.38
Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 7/112 (6%)
Query: 49 GLVAAVCLGLNLIFL---VAYLVCACHCRR---DDAVQTKQHHSCCITWTAVVAGLICCA 102
G++ LGL I L V Y C C C + Q ++ + + ++ L+ C
Sbjct: 108 GIILCCVLGLLFIILMPLVGYFFCMCRCCNKCGGEMHQRQKENGPFLRKCFAISLLVICI 167
Query: 103 AVGVG-FYGNSETNDGAYQLMYSLDDANHTFSGIDALVSGTTQKMKVDLEQH 153
+ +G FYG + ++ S A+ F + L++ T +++K L Q+
Sbjct: 168 IISIGIFYGFVANHQVRTRIKRSRKLADSNFKDLRTLLNETPEQIKYILAQY 219
>gi|224994193 prominin 1 isoform 7 [Homo sapiens]
Length = 842
Score = 33.9 bits (76), Expect = 0.38
Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 7/112 (6%)
Query: 49 GLVAAVCLGLNLIFL---VAYLVCACHCRR---DDAVQTKQHHSCCITWTAVVAGLICCA 102
G++ LGL I L V Y C C C + Q ++ + + ++ L+ C
Sbjct: 108 GIILCCVLGLLFIILMPLVGYFFCMCRCCNKCGGEMHQRQKENGPFLRKCFAISLLVICI 167
Query: 103 AVGVG-FYGNSETNDGAYQLMYSLDDANHTFSGIDALVSGTTQKMKVDLEQH 153
+ +G FYG + ++ S A+ F + L++ T +++K L Q+
Sbjct: 168 IISIGIFYGFVANHQVRTRIKRSRKLADSNFKDLRTLLNETPEQIKYILAQY 219
>gi|224994191 prominin 1 isoform 2 [Homo sapiens]
Length = 856
Score = 33.9 bits (76), Expect = 0.38
Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 7/112 (6%)
Query: 49 GLVAAVCLGLNLIFL---VAYLVCACHCRR---DDAVQTKQHHSCCITWTAVVAGLICCA 102
G++ LGL I L V Y C C C + Q ++ + + ++ L+ C
Sbjct: 99 GIILCCVLGLLFIILMPLVGYFFCMCRCCNKCGGEMHQRQKENGPFLRKCFAISLLVICI 158
Query: 103 AVGVG-FYGNSETNDGAYQLMYSLDDANHTFSGIDALVSGTTQKMKVDLEQH 153
+ +G FYG + ++ S A+ F + L++ T +++K L Q+
Sbjct: 159 IISIGIFYGFVANHQVRTRIKRSRKLADSNFKDLRTLLNETPEQIKYILAQY 210
>gi|5174387 prominin 1 isoform 1 [Homo sapiens]
Length = 865
Score = 33.9 bits (76), Expect = 0.38
Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 7/112 (6%)
Query: 49 GLVAAVCLGLNLIFL---VAYLVCACHCRR---DDAVQTKQHHSCCITWTAVVAGLICCA 102
G++ LGL I L V Y C C C + Q ++ + + ++ L+ C
Sbjct: 108 GIILCCVLGLLFIILMPLVGYFFCMCRCCNKCGGEMHQRQKENGPFLRKCFAISLLVICI 167
Query: 103 AVGVG-FYGNSETNDGAYQLMYSLDDANHTFSGIDALVSGTTQKMKVDLEQH 153
+ +G FYG + ++ S A+ F + L++ T +++K L Q+
Sbjct: 168 IISIGIFYGFVANHQVRTRIKRSRKLADSNFKDLRTLLNETPEQIKYILAQY 219
>gi|116268109 nucleotide-binding oligomerization domains 27 [Homo
sapiens]
Length = 1866
Score = 33.9 bits (76), Expect = 0.38
Identities = 48/164 (29%), Positives = 69/164 (42%), Gaps = 21/164 (12%)
Query: 110 GNSETNDGAYQLMYSL---DDANHTFSGIDALVSGTTQKMKVDLEQHLARLSEIFAARGD 166
GNS ++ G QL SL G +AL T + +L QHL L F+ G
Sbjct: 1643 GNSISSAGGVQLAESLVLCRRLEELMLGCNALGDPTALGLAQELPQHLRVLHLPFSHLGP 1702
Query: 167 YLQTLKFIQQMAGSVVVQLSGLPVWREVTMELTKLSDQTGYVEYYRWLSYLLLFILDLVI 226
A S+ L G P E+++ L+ G + + L LL +DLV
Sbjct: 1703 ---------GGALSLAQALDGSPHLEEISLAENNLAG--GVLRFCMELP--LLRQIDLVS 1749
Query: 227 CLIACLGLAKRSKCLLASMLCCGALS-LLLSWASLAADGSAAVA 269
C I + +K L +S C AL +LLSW L + +A +A
Sbjct: 1750 CKID----NQTAKLLTSSFTSCPALEVILLSWNLLGDEAAAELA 1789
>gi|33286442 BCL6 co-repressor-like 1 [Homo sapiens]
Length = 1711
Score = 33.5 bits (75), Expect = 0.50
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 11/94 (11%)
Query: 75 RDDAVQTKQHHSCCITWTAVV-------AGLICCAAVGVGFYGNSETNDGAYQ----LMY 123
RD+A T H +C WT ++ A + C A G ++ ND L Y
Sbjct: 1452 RDNAGYTALHEACSRGWTDILNILLEHGANVNCSAQDGTRPVHDAVVNDNLETIWLLLSY 1511
Query: 124 SLDDANHTFSGIDALVSGTTQKMKVDLEQHLARL 157
D T+SG A+ ++ MK L HL+ L
Sbjct: 1512 GADPTLATYSGQTAMKLASSDTMKRFLSDHLSDL 1545
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 32.7 bits (73), Expect = 0.85
Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 12/106 (11%)
Query: 427 IDDDDPFNPQAWRMAAHSPPRGQLHSFCSYSSGLGSQTSLQPPAQTISN------APVSE 480
+ D P +P A A + S + GLGSQ S PP + +P E
Sbjct: 2850 LSDPKPLSPTAEESAK------ERFSLYQHQGGLGSQVSALPPNSLVRKVKRTLPSPPPE 2903
Query: 481 YMNQAMLFGRNPRYENVPLIGRASPPPTYSPSMRATYLSVADEHLR 526
+ + +P+ L+ R PT P+ +A+ L D LR
Sbjct: 2904 EAHLPLAGQASPQLYAASLLQRGLTGPTTVPATKASLLRELDRDLR 2949
>gi|4827022 contactin 2 precursor [Homo sapiens]
Length = 1040
Score = 32.0 bits (71), Expect = 1.5
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Query: 450 LHSFCSYSSGLGSQTSLQPPAQTISNAPVSEYMNQAMLFGRNPRYENVPLI--GRASPPP 507
L S ++SS LGSQT+ PV E ++LF E V L RASPP
Sbjct: 19 LVSSSAWSSALGSQTTF---------GPVFEDQPLSVLFPEESTEEQVLLACRARASPPA 69
Query: 508 TYSPSMRATYLSV 520
TY M T + +
Sbjct: 70 TYRWKMNGTEMKL 82
>gi|227499621 solute carrier family 27 (fatty acid transporter),
member 2 isoform 2 [Homo sapiens]
Length = 567
Score = 31.6 bits (70), Expect = 1.9
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 227 CLIACLGLAKRSKCLLASMLCCGALSLLLS 256
C +ACL R+K LL CCGA LL+S
Sbjct: 129 CAMACLNYNIRAKSLLHCFQCCGAKVLLVS 158
>gi|227499619 solute carrier family 27 (fatty acid transporter),
member 2 isoform 1 [Homo sapiens]
Length = 620
Score = 31.6 bits (70), Expect = 1.9
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 227 CLIACLGLAKRSKCLLASMLCCGALSLLLS 256
C +ACL R+K LL CCGA LL+S
Sbjct: 129 CAMACLNYNIRAKSLLHCFQCCGAKVLLVS 158
>gi|219842298 brain-derived neurotrophic factor isoform e [Homo
sapiens]
Length = 329
Score = 30.8 bits (68), Expect = 3.2
Identities = 13/52 (25%), Positives = 27/52 (51%)
Query: 184 QLSGLPVWREVTMELTKLSDQTGYVEYYRWLSYLLLFILDLVICLIACLGLA 235
Q G V+ V++E KL + G++++++ + + L +VI C+ A
Sbjct: 50 QKKGCAVYLHVSVEFNKLIPENGFIKFHQVRRVMTILFLTMVISYFGCMKAA 101
>gi|130492454 zinc finger RNA binding protein 2 isoform 1 [Homo
sapiens]
Length = 939
Score = 30.8 bits (68), Expect = 3.2
Identities = 28/102 (27%), Positives = 38/102 (37%), Gaps = 12/102 (11%)
Query: 422 RDYDDIDDDDPFNPQAWRMAAHSPPRGQLHSFCSYSSGLGSQTSLQPPAQTISNAPVSEY 481
R Y+D Q+ RM A + C S GS + QPP Q AP+ E
Sbjct: 100 RSYEDRPYFQSAALQSGRMTAADSGQPGTQEACGQPSPHGSHSHAQPPQQ----APIVES 155
Query: 482 MNQAMLFGRNPRY--------ENVPLIGRASPPPTYSPSMRA 515
A Y E+ I + PPP+Y+P+ A
Sbjct: 156 GQPASTLSSGYTYPTATGVQPESSASIVTSYPPPSYNPTCTA 197
>gi|22749279 zinc finger protein 366 [Homo sapiens]
Length = 744
Score = 29.6 bits (65), Expect = 7.2
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 443 HSPPRGQLHSFCSYSSGLGSQTSLQPPAQTISNAPVSEYMNQAMLFGRNPRY--ENVPLI 500
+ PP G L F G GS+ P + N P E + A+ N + N+PL+
Sbjct: 57 YEPPPGDLDGFPGVFEGAGSRKRKSMPTKMPYNHPAEE-VTLALHSEENKNHGLPNLPLL 115
Query: 501 GRASPPPTYSPSM 513
P P Y M
Sbjct: 116 FPQPPRPKYDSQM 128
>gi|41352705 kinesin family member 3C [Homo sapiens]
Length = 793
Score = 29.6 bits (65), Expect = 7.2
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 462 SQTSLQPPAQTISNAPVSEYMNQAMLFGRNPRY--ENVPLIGRASPPP 507
SQ +P + P+S+Y AM G +PRY EN+ + PP
Sbjct: 672 SQMKKRPTSAVGYKRPISQYARVAMAMGSHPRYRAENIMFLELDVSPP 719
>gi|14589916 protocadherin 10 isoform 1 precursor [Homo sapiens]
Length = 1040
Score = 29.3 bits (64), Expect = 9.4
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 13/68 (19%)
Query: 43 ESLLFLGLVAAVCLG-LNLIFLVAYLVCACHCRRDDA--VQTKQHHSCCITWTAVVAGLI 99
E+ L L L+ + LG ++ IFL+A +V A C+++ + T CC +
Sbjct: 709 ETSLDLTLILIIALGSVSFIFLLAMIVLAVRCQKEKKLNIYTCLASDCC----------L 758
Query: 100 CCAAVGVG 107
CC G G
Sbjct: 759 CCCCCGGG 766
>gi|14589914 protocadherin 10 isoform 2 precursor [Homo sapiens]
Length = 896
Score = 29.3 bits (64), Expect = 9.4
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 13/68 (19%)
Query: 43 ESLLFLGLVAAVCLG-LNLIFLVAYLVCACHCRRDDA--VQTKQHHSCCITWTAVVAGLI 99
E+ L L L+ + LG ++ IFL+A +V A C+++ + T CC +
Sbjct: 709 ETSLDLTLILIIALGSVSFIFLLAMIVLAVRCQKEKKLNIYTCLASDCC----------L 758
Query: 100 CCAAVGVG 107
CC G G
Sbjct: 759 CCCCCGGG 766
>gi|21389623 prominin 2 [Homo sapiens]
Length = 834
Score = 29.3 bits (64), Expect = 9.4
Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 23/117 (19%)
Query: 50 LVAAVCLGLNLIFL----VAYLVCACHCRRDDAVQTKQHHSCC----------ITWTAVV 95
+V AV GL L+ + + + C CH R V+T+ C +T ++
Sbjct: 107 VVCAVIAGLYLLLVPTAGLCFCCCRCHRRCGGRVKTEHKALACERAALMVFLLLTTLLLL 166
Query: 96 AGLICCAAVGVGFYGNSETNDGAYQLMYSLDDANHTFSGIDALVSGTTQKMKVDLEQ 152
G++C F N T++ Q+ S++ T + LVS Q+++ +Q
Sbjct: 167 IGVVC------AFVTNQRTHE---QMGPSIEAMPETLLSLWGLVSDVPQELQAVAQQ 214
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.135 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,251,227
Number of Sequences: 37866
Number of extensions: 883991
Number of successful extensions: 3040
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 3017
Number of HSP's gapped (non-prelim): 27
length of query: 534
length of database: 18,247,518
effective HSP length: 107
effective length of query: 427
effective length of database: 14,195,856
effective search space: 6061630512
effective search space used: 6061630512
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.