Guide to the Human Genome
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Name: TTYH3 Sequence: fasta or formatted (523aa) NCBI GI: 51100978
Description:

tweety 3

Referenced in:

Chloride Channels

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6         50           3
 C cysteine            3.3         17           3
 D aspartate           4.8         25           1
 E glutamate           5.4         28           3
 F phenylalanine       2.7         14           1
 G glycine             6.5         34           1
 H histidine           2.7         14           1
 I isoleucine          2.9         15           2
 K lysine              1.5          8           1
 L leucine            14.1         74           4
 M methionine          1.3          7           1
 N asparagine          2.3         12           1
 P proline             5.2         27           3
 Q glutamine           4.4         23           2
 R arginine            5.2         27           3
 S serine              8.6         45           2
 T threonine           5.2         27           1
 V valine              8.0         42           2
 W tryptophan          2.3         12           2
 Y tyrosine            4.2         22           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tweety 3 
TTYH2                 0.362   tweety 2 isoform 1 
TTYH1                 0.270   tweety 1 isoform 2 
TTYH1                 0.270   tweety 1 isoform 1 
TTYH2                 0.137   tweety 2 isoform 2 
TMEM168               0.009   transmembrane protein 168 
RECQL4                0.008   RecQ protein-like 4 
TEP1                  0.007   telomerase-associated protein 1 
PROM1                 0.006   prominin 1 isoform 6 
PROM1                 0.006   prominin 1 isoform 7 
PROM1                 0.006   prominin 1 isoform 1 
COPS7B                0.005   COP9 constitutive photomorphogenic homolog subunit 7...
PAPOLA                0.005   poly(A) polymerase alpha 
LOC81691              0.004   exonuclease NEF-sp isoform 2 
LOC81691              0.004   exonuclease NEF-sp isoform 1 
PROM1                 0.004   prominin 1 isoform 2 
PROM1                 0.004   prominin 1 isoform 4 
PROM1                 0.004   prominin 1 isoform 5 
PROM1                 0.004   prominin 1 isoform 2 
SRPK2                 0.004   serine/arginine-rich protein-specific kinase 2 isofo...
SRPK2                 0.004   serine/arginine-rich protein-specific kinase 2 isofo...
GLTSCR1               0.004   glioma tumor suppressor candidate region gene 1 [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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