Guide to the Human Genome
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Name: TTYH1 Sequence: fasta or formatted (450aa) NCBI GI: 10257437
Description:

tweety 1 isoform 1

Referenced in:

Chloride Channels

Other entries for this name:
alt prot [460aa] tweety 1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         44           3
 C cysteine            2.7         12           3
 D aspartate           3.6         16           4
 E glutamate           6.2         28           2
 F phenylalanine       3.8         17           1
 G glycine             6.7         30           3
 H histidine           2.0          9           1
 I isoleucine          2.7         12           1
 K lysine              1.3          6           1
 L leucine            18.4         83           5
 M methionine          0.9          4           1
 N asparagine          2.4         11           1
 P proline             6.0         27           2
 Q glutamine           5.6         25           2
 R arginine            4.4         20           2
 S serine              8.0         36           2
 T threonine           4.4         20           2
 V valine              6.9         31           1
 W tryptophan          1.8          8           1
 Y tyrosine            2.4         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tweety 1 isoform 1 
TTYH1                 0.930   tweety 1 isoform 2 
TTYH2                 0.386   tweety 2 isoform 1 
TTYH3                 0.322   tweety 3 
TTYH2                 0.109   tweety 2 isoform 2 
DSG4                  0.008   desmoglein 4 isoform 1 
DSG4                  0.008   desmoglein 4 isoform 2 
CEP63                 0.007   centrosomal protein 63 isoform b 
CEP63                 0.007   centrosomal protein 63 isoform a 
CEP63                 0.007   centrosomal protein 63 isoform d 
CEP63                 0.007   centrosomal protein 63 isoform c 
PLEC1                 0.007   plectin 1 isoform 11 
PLEC1                 0.007   plectin 1 isoform 10 
PLEC1                 0.007   plectin 1 isoform 8 
PLEC1                 0.007   plectin 1 isoform 7 
PLEC1                 0.007   plectin 1 isoform 6 
PLEC1                 0.007   plectin 1 isoform 3 
PLEC1                 0.007   plectin 1 isoform 2 
PLEC1                 0.007   plectin 1 isoform 1 
GLRA3                 0.007   glycine receptor, alpha 3 isoform b 
GLRA3                 0.007   glycine receptor, alpha 3 isoform a 
GLRA2                 0.006   glycine receptor, alpha 2 isoform B 
GLRA2                 0.006   glycine receptor, alpha 2 isoform A 
GLRA2                 0.006   glycine receptor, alpha 2 isoform A 
SLC7A14               0.006   solute carrier family 7 (cationic amino acid transp...
LOC440577             0.005   PREDICTED: similar to nucleophosmin 1 
LOC728597             0.005   PREDICTED: doublecortin domain-containing protein E...
LOC440577             0.005   PREDICTED: similar to nucleophosmin 1 
LOC440577             0.005   PREDICTED: similar to nucleophosmin 1 
OR5M3                 0.005   olfactory receptor, family 5, subfamily M, member 3 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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