Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 51948366
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|51948366 ribonucleoprotein, PTB-binding 2 [Homo sapiens]
(678 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|51948366 ribonucleoprotein, PTB-binding 2 [Homo sapiens] 1358 0.0
gi|123173757 RAVER1 [Homo sapiens] 423 e-118
gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens] 64 6e-10
gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens] 64 6e-10
gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens] 64 6e-10
gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens] 64 6e-10
gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens] 64 6e-10
gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens] 62 2e-09
gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens] 62 2e-09
gi|115511032 ELAV (embryonic lethal, abnormal vision, Drosophila... 61 3e-09
gi|20357578 apobec-1 complementation factor isoform 3 [Homo sapi... 60 7e-09
gi|20357575 apobec-1 complementation factor isoform 2 [Homo sapi... 60 7e-09
gi|20357572 apobec-1 complementation factor isoform 1 [Homo sapi... 60 7e-09
gi|93277070 RNA binding motif protein 45 [Homo sapiens] 59 1e-08
gi|224028246 non-POU domain containing, octamer-binding isoform ... 57 7e-08
gi|224028244 non-POU domain containing, octamer-binding isoform ... 57 7e-08
gi|34932414 non-POU domain containing, octamer-binding isoform 1... 57 7e-08
gi|38201714 ELAV-like 1 [Homo sapiens] 55 2e-07
gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens] 50 5e-06
gi|21450675 RNA binding motif protein 46 [Homo sapiens] 50 7e-06
gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2, ... 50 9e-06
gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo s... 49 2e-05
gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens] 49 2e-05
gi|93277122 RNA binding motif protein 4 [Homo sapiens] 48 3e-05
gi|34452713 Ca2+-dependent secretion activator isoform 2 [Homo s... 48 3e-05
gi|34452715 Ca2+-dependent secretion activator isoform 1 [Homo s... 48 3e-05
gi|34452711 Ca2+-dependent secretion activator isoform 3 [Homo s... 48 3e-05
gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo s... 48 3e-05
gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Ho... 47 4e-05
gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo... 47 4e-05
>gi|51948366 ribonucleoprotein, PTB-binding 2 [Homo sapiens]
Length = 678
Score = 1358 bits (3514), Expect = 0.0
Identities = 678/678 (100%), Positives = 678/678 (100%)
Query: 1 MAAAAGDGGGEGGAGLGSAAGLGPGPGLRGQGPSAEAHEGAPDPMPAALHPEEVAARLQR 60
MAAAAGDGGGEGGAGLGSAAGLGPGPGLRGQGPSAEAHEGAPDPMPAALHPEEVAARLQR
Sbjct: 1 MAAAAGDGGGEGGAGLGSAAGLGPGPGLRGQGPSAEAHEGAPDPMPAALHPEEVAARLQR 60
Query: 61 MQRELSNRRKILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNKRTAFVTLLNGEQAQNAI 120
MQRELSNRRKILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNKRTAFVTLLNGEQAQNAI
Sbjct: 61 MQRELSNRRKILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNKRTAFVTLLNGEQAQNAI 120
Query: 121 QMFHQYSFRGKDLIVQLQPTDALLCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTG 180
QMFHQYSFRGKDLIVQLQPTDALLCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTG
Sbjct: 121 QMFHQYSFRGKDLIVQLQPTDALLCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTG 180
Query: 181 HSKGYGFVEYMKKDFAAKARLELLGRQLGASALFAQWMDVNLLASELIHSKCLCIDKLPS 240
HSKGYGFVEYMKKDFAAKARLELLGRQLGASALFAQWMDVNLLASELIHSKCLCIDKLPS
Sbjct: 181 HSKGYGFVEYMKKDFAAKARLELLGRQLGASALFAQWMDVNLLASELIHSKCLCIDKLPS 240
Query: 241 DYRDSEELLQIFSSVHKPVFCQLAQDEGSYVGGFAVVEYSTAEQAEEVQQAADGMTIKGS 300
DYRDSEELLQIFSSVHKPVFCQLAQDEGSYVGGFAVVEYSTAEQAEEVQQAADGMTIKGS
Sbjct: 241 DYRDSEELLQIFSSVHKPVFCQLAQDEGSYVGGFAVVEYSTAEQAEEVQQAADGMTIKGS 300
Query: 301 KVQVSFCAPGAPGRSTLAALIAAQRVMHSNQKGLLPEPNPVQIMKSLNNPAMLQVLLQPQ 360
KVQVSFCAPGAPGRSTLAALIAAQRVMHSNQKGLLPEPNPVQIMKSLNNPAMLQVLLQPQ
Sbjct: 301 KVQVSFCAPGAPGRSTLAALIAAQRVMHSNQKGLLPEPNPVQIMKSLNNPAMLQVLLQPQ 360
Query: 361 LCGRAVKPAVLGTPHSLPHLMNPSISPAFLHLNKAHQNLSHIPLAQQQLMKFENIHTNNK 420
LCGRAVKPAVLGTPHSLPHLMNPSISPAFLHLNKAHQNLSHIPLAQQQLMKFENIHTNNK
Sbjct: 361 LCGRAVKPAVLGTPHSLPHLMNPSISPAFLHLNKAHQNLSHIPLAQQQLMKFENIHTNNK 420
Query: 421 PGLLGEPPAVVLQTALGIGSVLPLKKELGHHHGEAHKTSSLIPTQTTITAGMGMLPFFPN 480
PGLLGEPPAVVLQTALGIGSVLPLKKELGHHHGEAHKTSSLIPTQTTITAGMGMLPFFPN
Sbjct: 421 PGLLGEPPAVVLQTALGIGSVLPLKKELGHHHGEAHKTSSLIPTQTTITAGMGMLPFFPN 480
Query: 481 QHIAGQAGPGHSNTQEKQPATVGMAEGNFSGSQPYLQSFPNLAAGSLLVGHHKQQQSQPK 540
QHIAGQAGPGHSNTQEKQPATVGMAEGNFSGSQPYLQSFPNLAAGSLLVGHHKQQQSQPK
Sbjct: 481 QHIAGQAGPGHSNTQEKQPATVGMAEGNFSGSQPYLQSFPNLAAGSLLVGHHKQQQSQPK 540
Query: 541 GTEISSGAASKNQTSLLGEPPKEIRLSKNPYLNLASVLPSVCLSSPASKTTLHKTGIASS 600
GTEISSGAASKNQTSLLGEPPKEIRLSKNPYLNLASVLPSVCLSSPASKTTLHKTGIASS
Sbjct: 541 GTEISSGAASKNQTSLLGEPPKEIRLSKNPYLNLASVLPSVCLSSPASKTTLHKTGIASS 600
Query: 601 ILDAISQGSESQHALEKCIAYSPPFGDYAQVSSLRNEKRGSSYLISAPEGGSVECVDQHS 660
ILDAISQGSESQHALEKCIAYSPPFGDYAQVSSLRNEKRGSSYLISAPEGGSVECVDQHS
Sbjct: 601 ILDAISQGSESQHALEKCIAYSPPFGDYAQVSSLRNEKRGSSYLISAPEGGSVECVDQHS 660
Query: 661 QGTGAYYMETYLKKKRVY 678
QGTGAYYMETYLKKKRVY
Sbjct: 661 QGTGAYYMETYLKKKRVY 678
>gi|123173757 RAVER1 [Homo sapiens]
Length = 756
Score = 423 bits (1088), Expect = e-118
Identities = 255/573 (44%), Positives = 325/573 (56%), Gaps = 63/573 (10%)
Query: 22 LGPGPGLRGQGPSAEAHEGAPDPMPAALHPEEVAARLQRMQRELSNRRKILVKNLPQDSN 81
L P G + A A AP+ L PEE+ RL+ +R+ NRRKIL++ LP D
Sbjct: 30 LSPKSGAEVEAGDA-AERRAPEEELPPLDPEEIRKRLEHTERQFRNRRKILIRGLPGDVT 88
Query: 82 CQEVHDLLKDYDLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 141
QEVHDLL DY+LKYC+VD+ K TAFVTLLNGEQA+ AI FHQ R ++L VQLQPTD
Sbjct: 89 NQEVHDLLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTD 148
Query: 142 ALLCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARL 201
ALLC+ N+P S T ++FEELVR +G++ERCFLVYSE TG SKGYGF EYMKKD AA+A+
Sbjct: 149 ALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKS 208
Query: 202 ELLGRQLGASALFAQWMDVNLLASELIHSKCLCIDKLPSDYRDSEELLQIFSSVHKPVFC 261
+LLG+ LG L+ W D L L+HS+CLC+D+LP + D + L + S+VH P FC
Sbjct: 209 DLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFC 268
Query: 262 QLAQDEGSYVGGFAVVEYSTAEQAEEVQQAADGMTIKGSKVQVSFCAPGAPGRSTLAALI 321
QLA + + GFAV+EY TAE AEE QQ ADG+++ GS ++VSFCAPG PGRS LAALI
Sbjct: 269 QLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRSMLAALI 328
Query: 322 AAQRVMHSNQKGLLPEPNPVQIMKSLNNPAMLQVLLQPQLCGRA-VKPAVLGTPHSLPHL 380
AAQ + KGLLPEPN +Q++ +L A LQ+LL P L G A K +LG P ++P L
Sbjct: 329 AAQATALNRGKGLLPEPNILQLLNNLGPSASLQLLLNPLLHGSAGGKQGLLGAPPAMPLL 388
Query: 381 MNPSISPAFLHLNKAHQNLSHIPLAQQQLMKFENIHTNNKPGLLGEPPAVVLQTALGIGS 440
P++S A L L Q KPG+LG+ P LQ G
Sbjct: 389 NGPALSTALLQLALQTQG-------------------QKKPGILGDSPLGALQP--GAQP 427
Query: 441 VLPLKKELGHHHGEAHKTSSLIPTQTTITAGMGMLPFFPNQHIAGQAGPGHSNTQEKQPA 500
PL EL AG G+ P P P P+
Sbjct: 428 ANPLLGEL--------------------PAGGGLPPELP---------PRRGKPPPLLPS 458
Query: 501 TVGMAEGNFSG---SQPYLQSFPNLAAGSLLVGHHKQQQSQPKGTEISSG-AASKNQTSL 556
+G A G+ P Q P A L + S +G + SG + SL
Sbjct: 459 VLGPAGGDREALGLGPPAAQLTPPPAPVGL-------RGSGLRGLQKDSGPLPTPPGVSL 511
Query: 557 LGEPPKEIRLSKNPYLNLASVLPSVCLSSPASK 589
LGEPPK+ R+ NPYLNL S+LP+ L+ ++
Sbjct: 512 LGEPPKDYRIPLNPYLNLHSLLPASNLAGKEAR 544
Score = 42.4 bits (98), Expect = 0.001
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 17/100 (17%)
Query: 595 TGIASSILDAISQGSESQHALEKCIAYSPPFGDYAQVSSLRNEKRGSSYLISAPEGGSVE 654
+G +S + Q Q L K I S P G + L G S+L+ P GG
Sbjct: 658 SGSPTSYFTSGLQAGLKQSHLSKAIG-SSPLGSGEGLLGLSPGPNGHSHLLKTPLGGQKR 716
Query: 655 C----------------VDQHSQGTGAYYMETYLKKKRVY 678
V QHSQG G +Y ++YLK+KR++
Sbjct: 717 SFAHLLPSPEPSPEGSYVGQHSQGLGGHYADSYLKRKRIF 756
>gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens]
Length = 380
Score = 63.5 bits (153), Expect = 6e-10
Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 5/180 (2%)
Query: 144 LCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARLEL 203
L + +P + T EEF L + G IE C LV ++TG S GYGFV Y+ A KA L
Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107
Query: 204 LGRQLGASALFAQWMDVNLLASELIHSKCLCIDKLPSDYRDSEELLQIFSSVHKPVFCQL 263
G +L + + +S I L + LP +EL Q+FS + + ++
Sbjct: 108 NGLRLQTKTIKVSYARP---SSASIRDANLYVSGLPKT-MTQKELEQLFSQYGRIITSRI 163
Query: 264 AQDEGSYVG-GFAVVEYSTAEQAEEVQQAADGMTIKGSKVQVSFCAPGAPGRSTLAALIA 322
D+ + V G + + +AEE + +G G+ ++ P + + AL++
Sbjct: 164 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLS 223
Score = 53.9 bits (128), Expect = 5e-07
Identities = 47/189 (24%), Positives = 87/189 (46%), Gaps = 27/189 (14%)
Query: 32 GPSAEAHEGAPDPMPAALHPEEVAARLQRMQRELSNRRKILVKNLPQDSNCQEVHDLLKD 91
GPS+ + P PM ++ ++ ++V LPQ+ +E L
Sbjct: 23 GPSSN-NRNCPSPMQTGATTDD-------------SKTNLIVNYLPQNMTQEEFRSLFGS 68
Query: 92 Y-DLKYCYVDRNKRTA------FVTLLNGEQAQNAIQMFHQYSFRGKDLIVQL-QPT--- 140
+++ C + R+K T FV ++ + A+ AI + + K + V +P+
Sbjct: 69 IGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 128
Query: 141 --DALLCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAK 198
DA L ++ +P + T +E E+L YG I ++ +VTG S+G GF+ + K+ A +
Sbjct: 129 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 188
Query: 199 ARLELLGRQ 207
A L G++
Sbjct: 189 AIKGLNGQK 197
>gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens]
Length = 369
Score = 63.5 bits (153), Expect = 6e-10
Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 5/180 (2%)
Query: 144 LCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARLEL 203
L + +P + T EEF L + G IE C LV ++TG S GYGFV Y+ A KA L
Sbjct: 51 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 110
Query: 204 LGRQLGASALFAQWMDVNLLASELIHSKCLCIDKLPSDYRDSEELLQIFSSVHKPVFCQL 263
G +L + + +S I L + LP +EL Q+FS + + ++
Sbjct: 111 NGLRLQTKTIKVSYARP---SSASIRDANLYVSGLPKT-MTQKELEQLFSQYGRIITSRI 166
Query: 264 AQDEGSYVG-GFAVVEYSTAEQAEEVQQAADGMTIKGSKVQVSFCAPGAPGRSTLAALIA 322
D+ + V G + + +AEE + +G G+ ++ P + + AL++
Sbjct: 167 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLS 226
Score = 53.9 bits (128), Expect = 5e-07
Identities = 47/189 (24%), Positives = 87/189 (46%), Gaps = 27/189 (14%)
Query: 32 GPSAEAHEGAPDPMPAALHPEEVAARLQRMQRELSNRRKILVKNLPQDSNCQEVHDLLKD 91
GPS+ + P PM ++ ++ ++V LPQ+ +E L
Sbjct: 26 GPSSN-NRNCPSPMQTGATTDD-------------SKTNLIVNYLPQNMTQEEFRSLFGS 71
Query: 92 Y-DLKYCYVDRNKRTA------FVTLLNGEQAQNAIQMFHQYSFRGKDLIVQL-QPT--- 140
+++ C + R+K T FV ++ + A+ AI + + K + V +P+
Sbjct: 72 IGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 131
Query: 141 --DALLCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAK 198
DA L ++ +P + T +E E+L YG I ++ +VTG S+G GF+ + K+ A +
Sbjct: 132 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 191
Query: 199 ARLELLGRQ 207
A L G++
Sbjct: 192 AIKGLNGQK 200
>gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens]
Length = 366
Score = 63.5 bits (153), Expect = 6e-10
Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 5/180 (2%)
Query: 144 LCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARLEL 203
L + +P + T EEF L + G IE C LV ++TG S GYGFV Y+ A KA L
Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107
Query: 204 LGRQLGASALFAQWMDVNLLASELIHSKCLCIDKLPSDYRDSEELLQIFSSVHKPVFCQL 263
G +L + + +S I L + LP +EL Q+FS + + ++
Sbjct: 108 NGLRLQTKTIKVSYARP---SSASIRDANLYVSGLPKT-MTQKELEQLFSQYGRIITSRI 163
Query: 264 AQDEGSYVG-GFAVVEYSTAEQAEEVQQAADGMTIKGSKVQVSFCAPGAPGRSTLAALIA 322
D+ + V G + + +AEE + +G G+ ++ P + + AL++
Sbjct: 164 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLS 223
Score = 53.9 bits (128), Expect = 5e-07
Identities = 47/189 (24%), Positives = 87/189 (46%), Gaps = 27/189 (14%)
Query: 32 GPSAEAHEGAPDPMPAALHPEEVAARLQRMQRELSNRRKILVKNLPQDSNCQEVHDLLKD 91
GPS+ + P PM ++ ++ ++V LPQ+ +E L
Sbjct: 23 GPSSN-NRNCPSPMQTGATTDD-------------SKTNLIVNYLPQNMTQEEFRSLFGS 68
Query: 92 Y-DLKYCYVDRNKRTA------FVTLLNGEQAQNAIQMFHQYSFRGKDLIVQL-QPT--- 140
+++ C + R+K T FV ++ + A+ AI + + K + V +P+
Sbjct: 69 IGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 128
Query: 141 --DALLCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAK 198
DA L ++ +P + T +E E+L YG I ++ +VTG S+G GF+ + K+ A +
Sbjct: 129 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 188
Query: 199 ARLELLGRQ 207
A L G++
Sbjct: 189 AIKGLNGQK 197
>gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens]
Length = 383
Score = 63.5 bits (153), Expect = 6e-10
Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 5/180 (2%)
Query: 144 LCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARLEL 203
L + +P + T EEF L + G IE C LV ++TG S GYGFV Y+ A KA L
Sbjct: 65 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 124
Query: 204 LGRQLGASALFAQWMDVNLLASELIHSKCLCIDKLPSDYRDSEELLQIFSSVHKPVFCQL 263
G +L + + +S I L + LP +EL Q+FS + + ++
Sbjct: 125 NGLRLQTKTIKVSYARP---SSASIRDANLYVSGLPKT-MTQKELEQLFSQYGRIITSRI 180
Query: 264 AQDEGSYVG-GFAVVEYSTAEQAEEVQQAADGMTIKGSKVQVSFCAPGAPGRSTLAALIA 322
D+ + V G + + +AEE + +G G+ ++ P + + AL++
Sbjct: 181 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLS 240
Score = 53.9 bits (128), Expect = 5e-07
Identities = 47/189 (24%), Positives = 87/189 (46%), Gaps = 27/189 (14%)
Query: 32 GPSAEAHEGAPDPMPAALHPEEVAARLQRMQRELSNRRKILVKNLPQDSNCQEVHDLLKD 91
GPS+ + P PM ++ ++ ++V LPQ+ +E L
Sbjct: 40 GPSSN-NRNCPSPMQTGATTDD-------------SKTNLIVNYLPQNMTQEEFRSLFGS 85
Query: 92 Y-DLKYCYVDRNKRTA------FVTLLNGEQAQNAIQMFHQYSFRGKDLIVQL-QPT--- 140
+++ C + R+K T FV ++ + A+ AI + + K + V +P+
Sbjct: 86 IGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 145
Query: 141 --DALLCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAK 198
DA L ++ +P + T +E E+L YG I ++ +VTG S+G GF+ + K+ A +
Sbjct: 146 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 205
Query: 199 ARLELLGRQ 207
A L G++
Sbjct: 206 AIKGLNGQK 214
>gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens]
Length = 366
Score = 63.5 bits (153), Expect = 6e-10
Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 5/180 (2%)
Query: 144 LCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARLEL 203
L + +P + T EEF L + G IE C LV ++TG S GYGFV Y+ A KA L
Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107
Query: 204 LGRQLGASALFAQWMDVNLLASELIHSKCLCIDKLPSDYRDSEELLQIFSSVHKPVFCQL 263
G +L + + +S I L + LP +EL Q+FS + + ++
Sbjct: 108 NGLRLQTKTIKVSYARP---SSASIRDANLYVSGLPKT-MTQKELEQLFSQYGRIITSRI 163
Query: 264 AQDEGSYVG-GFAVVEYSTAEQAEEVQQAADGMTIKGSKVQVSFCAPGAPGRSTLAALIA 322
D+ + V G + + +AEE + +G G+ ++ P + + AL++
Sbjct: 164 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLS 223
Score = 53.9 bits (128), Expect = 5e-07
Identities = 47/189 (24%), Positives = 87/189 (46%), Gaps = 27/189 (14%)
Query: 32 GPSAEAHEGAPDPMPAALHPEEVAARLQRMQRELSNRRKILVKNLPQDSNCQEVHDLLKD 91
GPS+ + P PM ++ ++ ++V LPQ+ +E L
Sbjct: 23 GPSSN-NRNCPSPMQTGATTDD-------------SKTNLIVNYLPQNMTQEEFRSLFGS 68
Query: 92 Y-DLKYCYVDRNKRTA------FVTLLNGEQAQNAIQMFHQYSFRGKDLIVQL-QPT--- 140
+++ C + R+K T FV ++ + A+ AI + + K + V +P+
Sbjct: 69 IGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 128
Query: 141 --DALLCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAK 198
DA L ++ +P + T +E E+L YG I ++ +VTG S+G GF+ + K+ A +
Sbjct: 129 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 188
Query: 199 ARLELLGRQ 207
A L G++
Sbjct: 189 AIKGLNGQK 197
>gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens]
Length = 367
Score = 62.0 bits (149), Expect = 2e-09
Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 5/179 (2%)
Query: 144 LCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARLEL 203
L + +P + T +EF+ L + G+IE C LV ++TG S GYGFV Y + A KA L
Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100
Query: 204 LGRQLGASALFAQWMDVNLLASELIHSKCLCIDKLPSDYRDSEELLQIFSSVHKPVFCQL 263
G +L + + +S I L + LP +E+ Q+FS + + ++
Sbjct: 101 NGLKLQTKTIKVSYARP---SSASIRDANLYVSGLPKT-MSQKEMEQLFSQYGRIITSRI 156
Query: 264 AQDEGSYVG-GFAVVEYSTAEQAEEVQQAADGMTIKGSKVQVSFCAPGAPGRSTLAALI 321
D+ + V G + + +AEE + +G G+ ++ P + T AL+
Sbjct: 157 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALL 215
Score = 51.2 bits (121), Expect = 3e-06
Identities = 44/159 (27%), Positives = 77/159 (48%), Gaps = 14/159 (8%)
Query: 67 NRRKILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTA------FVTLLNGEQAQNA 119
++ ++V LPQ+ E L D++ C + R+K T FV + A A
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKA 96
Query: 120 IQMFHQYSFRGKDLIVQL-QPT-----DALLCITNVPISFTSEEFEELVRAYGNIERCFL 173
I + + K + V +P+ DA L ++ +P + + +E E+L YG I +
Sbjct: 97 INTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRI 156
Query: 174 VYSEVTGHSKGYGFVEYMKKDFAAKARLELLGRQ-LGAS 211
+ +VTG S+G GF+ + K+ A +A L G++ LGA+
Sbjct: 157 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAA 195
>gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens]
Length = 360
Score = 62.0 bits (149), Expect = 2e-09
Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 5/179 (2%)
Query: 144 LCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARLEL 203
L + +P + T +EF+ L + G+IE C LV ++TG S GYGFV Y + A KA L
Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100
Query: 204 LGRQLGASALFAQWMDVNLLASELIHSKCLCIDKLPSDYRDSEELLQIFSSVHKPVFCQL 263
G +L + + +S I L + LP +E+ Q+FS + + ++
Sbjct: 101 NGLKLQTKTIKVSYARP---SSASIRDANLYVSGLPKT-MSQKEMEQLFSQYGRIITSRI 156
Query: 264 AQDEGSYVG-GFAVVEYSTAEQAEEVQQAADGMTIKGSKVQVSFCAPGAPGRSTLAALI 321
D+ + V G + + +AEE + +G G+ ++ P + T AL+
Sbjct: 157 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALL 215
Score = 51.2 bits (121), Expect = 3e-06
Identities = 44/159 (27%), Positives = 77/159 (48%), Gaps = 14/159 (8%)
Query: 67 NRRKILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTA------FVTLLNGEQAQNA 119
++ ++V LPQ+ E L D++ C + R+K T FV + A A
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKA 96
Query: 120 IQMFHQYSFRGKDLIVQL-QPT-----DALLCITNVPISFTSEEFEELVRAYGNIERCFL 173
I + + K + V +P+ DA L ++ +P + + +E E+L YG I +
Sbjct: 97 INTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRI 156
Query: 174 VYSEVTGHSKGYGFVEYMKKDFAAKARLELLGRQ-LGAS 211
+ +VTG S+G GF+ + K+ A +A L G++ LGA+
Sbjct: 157 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAA 195
>gi|115511032 ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B) [Homo sapiens]
Length = 359
Score = 61.2 bits (147), Expect = 3e-09
Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 5/180 (2%)
Query: 144 LCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARLEL 203
L + +P + T EE + L + G IE C LV ++TG S GYGFV Y+ A KA L
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 204 LGRQLGASALFAQWMDVNLLASELIHSKCLCIDKLPSDYRDSEELLQIFSSVHKPVFCQL 263
G +L + + +S I L + LP +EL Q+FS + + ++
Sbjct: 101 NGLRLQTKTIKVSYARP---SSASIRDANLYVSGLPKT-MTQKELEQLFSQYGRIITSRI 156
Query: 264 AQDEGSYVG-GFAVVEYSTAEQAEEVQQAADGMTIKGSKVQVSFCAPGAPGRSTLAALIA 322
D+ + + G + + +AEE + +G G+ ++ P + T A+++
Sbjct: 157 LVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILS 216
Score = 53.9 bits (128), Expect = 5e-07
Identities = 41/154 (26%), Positives = 78/154 (50%), Gaps = 13/154 (8%)
Query: 67 NRRKILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTA------FVTLLNGEQAQNA 119
++ ++V LPQ+ +E+ L +++ C + R+K T FV ++ + A+ A
Sbjct: 37 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96
Query: 120 IQMFHQYSFRGKDLIVQL-QPT-----DALLCITNVPISFTSEEFEELVRAYGNIERCFL 173
I + + K + V +P+ DA L ++ +P + T +E E+L YG I +
Sbjct: 97 INTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 156
Query: 174 VYSEVTGHSKGYGFVEYMKKDFAAKARLELLGRQ 207
+ +VTG S+G GF+ + K+ A +A L G++
Sbjct: 157 LVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 190
>gi|20357578 apobec-1 complementation factor isoform 3 [Homo
sapiens]
Length = 594
Score = 60.1 bits (144), Expect = 7e-09
Identities = 66/251 (26%), Positives = 108/251 (43%), Gaps = 15/251 (5%)
Query: 70 KILVKNLPQDSNCQEVHDLL----KDYDLKYC--YVDRNKRTAFVTLLNGEQAQNAIQMF 123
+I + LP+D E+ L K Y+++ + N+ AFVT N +A+NAI+
Sbjct: 65 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKVEAKNAIKQL 124
Query: 124 HQYSFR-GKDLIVQLQPTDALLCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHS 182
+ Y R G+ L V + L + +P + EE ++ +VY +
Sbjct: 125 NNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKT 184
Query: 183 K--GYGFVEYMKKDFAAKARLELL-GR-QLGASALFAQWMDVNLLASELIHSKCLCIDKL 238
K G+ FVEY AA AR +LL GR QL + W + + E S +
Sbjct: 185 KNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSSVKILYVR 244
Query: 239 PSDYRDSEELLQIFSSVHKPVFCQLAQDEGSYVGGFAVVEYSTAEQAEEVQQAADGMTIK 298
SEE+++ + KP A + + +A V +S E A E +A +G +
Sbjct: 245 NLMLSTSEEMIEKEFNNIKPG----AVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLD 300
Query: 299 GSKVQVSFCAP 309
GS ++V+ P
Sbjct: 301 GSPIEVTLAKP 311
>gi|20357575 apobec-1 complementation factor isoform 2 [Homo
sapiens]
Length = 594
Score = 60.1 bits (144), Expect = 7e-09
Identities = 66/251 (26%), Positives = 108/251 (43%), Gaps = 15/251 (5%)
Query: 70 KILVKNLPQDSNCQEVHDLL----KDYDLKYC--YVDRNKRTAFVTLLNGEQAQNAIQMF 123
+I + LP+D E+ L K Y+++ + N+ AFVT N +A+NAI+
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKVEAKNAIKQL 116
Query: 124 HQYSFR-GKDLIVQLQPTDALLCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHS 182
+ Y R G+ L V + L + +P + EE ++ +VY +
Sbjct: 117 NNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKT 176
Query: 183 K--GYGFVEYMKKDFAAKARLELL-GR-QLGASALFAQWMDVNLLASELIHSKCLCIDKL 238
K G+ FVEY AA AR +LL GR QL + W + + E S +
Sbjct: 177 KNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSSVKILYVR 236
Query: 239 PSDYRDSEELLQIFSSVHKPVFCQLAQDEGSYVGGFAVVEYSTAEQAEEVQQAADGMTIK 298
SEE+++ + KP A + + +A V +S E A E +A +G +
Sbjct: 237 NLMLSTSEEMIEKEFNNIKPG----AVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLD 292
Query: 299 GSKVQVSFCAP 309
GS ++V+ P
Sbjct: 293 GSPIEVTLAKP 303
>gi|20357572 apobec-1 complementation factor isoform 1 [Homo
sapiens]
Length = 586
Score = 60.1 bits (144), Expect = 7e-09
Identities = 66/251 (26%), Positives = 108/251 (43%), Gaps = 15/251 (5%)
Query: 70 KILVKNLPQDSNCQEVHDLL----KDYDLKYC--YVDRNKRTAFVTLLNGEQAQNAIQMF 123
+I + LP+D E+ L K Y+++ + N+ AFVT N +A+NAI+
Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKVEAKNAIKQL 116
Query: 124 HQYSFR-GKDLIVQLQPTDALLCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHS 182
+ Y R G+ L V + L + +P + EE ++ +VY +
Sbjct: 117 NNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKT 176
Query: 183 K--GYGFVEYMKKDFAAKARLELL-GR-QLGASALFAQWMDVNLLASELIHSKCLCIDKL 238
K G+ FVEY AA AR +LL GR QL + W + + E S +
Sbjct: 177 KNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSSVKILYVR 236
Query: 239 PSDYRDSEELLQIFSSVHKPVFCQLAQDEGSYVGGFAVVEYSTAEQAEEVQQAADGMTIK 298
SEE+++ + KP A + + +A V +S E A E +A +G +
Sbjct: 237 NLMLSTSEEMIEKEFNNIKPG----AVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLD 292
Query: 299 GSKVQVSFCAP 309
GS ++V+ P
Sbjct: 293 GSPIEVTLAKP 303
>gi|93277070 RNA binding motif protein 45 [Homo sapiens]
Length = 474
Score = 58.9 bits (141), Expect = 1e-08
Identities = 69/296 (23%), Positives = 112/296 (37%), Gaps = 68/296 (22%)
Query: 93 DLKYCYVDRNKRT------AFVTLLNGEQAQNAIQMFHQYSFRGKD------LIVQ---- 136
D++ +V R+K T AFV QA A++ H D I Q
Sbjct: 50 DIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTKPIKVFIAQSRSS 109
Query: 137 -----LQPTDALLCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYM 191
++ + +P S+T E+ E + YG+IE C ++ ++VTG SKG G+V Y+
Sbjct: 110 GSHRDVEDEELTRIFVMIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYL 169
Query: 192 KKDFAAKA-------------------------------RLELLGRQ-------LGASAL 213
K AA+A R E LG + +
Sbjct: 170 KPSQAAQAIENCDRSFRAILAEPKNKASESSEQDYYSNMRQEALGHEPRVNMFPFEQQSE 229
Query: 214 FAQWMDVNLLASELIHSKCLCIDKLPSDYRDSEELLQIFSSVHKPVFCQLAQDEGSYVGG 273
F+ + + E I + + ++P E+L IF V +C++ +D S G
Sbjct: 230 FSSFDKNDSRGQEAISKRLSVVSRVPF---TEEQLFSIFDIVPGLEYCEVQRDPYSNY-G 285
Query: 274 FAVVEYSTAEQAEEVQQAADGMTI-KGSKVQVSFCAPGAPG----RSTLAALIAAQ 324
VV+Y A + G G+++ VSF G+ R ++AAQ
Sbjct: 286 HGVVQYFNVASAIYAKYKLHGFQYPPGNRIGVSFIDDGSNATDLLRKMATQMVAAQ 341
Score = 30.8 bits (68), Expect = 4.3
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 165 YGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARLELLGRQLG 209
+G+I+ ++V + T SKG FV++ + A +A E+ G+ LG
Sbjct: 48 FGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLG 92
>gi|224028246 non-POU domain containing, octamer-binding isoform 1
[Homo sapiens]
Length = 471
Score = 56.6 bits (135), Expect = 7e-08
Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 13/170 (7%)
Query: 42 PDPMPAALHPEEVAARLQRMQRELSNRRK-----------ILVKNLPQDSNCQEVHDLLK 90
P P P + ++ +++ + + +L N RK + V NLP D +E+ L +
Sbjct: 36 PPPPPIPANGQQASSQNEGLTIDLKNFRKPGEKTFTQRSRLFVGNLPPDITEEEMRKLFE 95
Query: 91 DYDLK-YCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDALLCITNV 149
Y ++ ++K F+ L A+ A RGK L V+ A L + N+
Sbjct: 96 KYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSASLTVRNL 155
Query: 150 PISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKA 199
P ++E EE +G +ER ++ + G G G VE+ K A KA
Sbjct: 156 PQYVSNELLEEAFSVFGQVERAVVIVDD-RGRPSGKGIVEFSGKPAARKA 204
Score = 39.3 bits (90), Expect = 0.012
Identities = 35/139 (25%), Positives = 54/139 (38%), Gaps = 20/139 (14%)
Query: 144 LCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARLEL 203
L + N+P T EE +L YG F+ KG+GF+ + A A++EL
Sbjct: 76 LFVGNLPPDITEEEMRKLFEKYGKAGEVFI------HKDKGFGFIRLETRTLAEIAKVEL 129
Query: 204 LGRQLGASALFAQWMDVNLLASELIHSKCLCIDKLPSDYRDS--EELLQIFSSVHKPVFC 261
L L ++ HS L + LP + EE +F V + V
Sbjct: 130 DNMPLRGKQLRVRF---------ACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAV-- 178
Query: 262 QLAQDEGSYVGGFAVVEYS 280
+ D+ G +VE+S
Sbjct: 179 -VIVDDRGRPSGKGIVEFS 196
>gi|224028244 non-POU domain containing, octamer-binding isoform 1
[Homo sapiens]
Length = 471
Score = 56.6 bits (135), Expect = 7e-08
Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 13/170 (7%)
Query: 42 PDPMPAALHPEEVAARLQRMQRELSNRRK-----------ILVKNLPQDSNCQEVHDLLK 90
P P P + ++ +++ + + +L N RK + V NLP D +E+ L +
Sbjct: 36 PPPPPIPANGQQASSQNEGLTIDLKNFRKPGEKTFTQRSRLFVGNLPPDITEEEMRKLFE 95
Query: 91 DYDLK-YCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDALLCITNV 149
Y ++ ++K F+ L A+ A RGK L V+ A L + N+
Sbjct: 96 KYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSASLTVRNL 155
Query: 150 PISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKA 199
P ++E EE +G +ER ++ + G G G VE+ K A KA
Sbjct: 156 PQYVSNELLEEAFSVFGQVERAVVIVDD-RGRPSGKGIVEFSGKPAARKA 204
Score = 39.3 bits (90), Expect = 0.012
Identities = 35/139 (25%), Positives = 54/139 (38%), Gaps = 20/139 (14%)
Query: 144 LCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARLEL 203
L + N+P T EE +L YG F+ KG+GF+ + A A++EL
Sbjct: 76 LFVGNLPPDITEEEMRKLFEKYGKAGEVFI------HKDKGFGFIRLETRTLAEIAKVEL 129
Query: 204 LGRQLGASALFAQWMDVNLLASELIHSKCLCIDKLPSDYRDS--EELLQIFSSVHKPVFC 261
L L ++ HS L + LP + EE +F V + V
Sbjct: 130 DNMPLRGKQLRVRF---------ACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAV-- 178
Query: 262 QLAQDEGSYVGGFAVVEYS 280
+ D+ G +VE+S
Sbjct: 179 -VIVDDRGRPSGKGIVEFS 196
>gi|34932414 non-POU domain containing, octamer-binding isoform 1
[Homo sapiens]
Length = 471
Score = 56.6 bits (135), Expect = 7e-08
Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 13/170 (7%)
Query: 42 PDPMPAALHPEEVAARLQRMQRELSNRRK-----------ILVKNLPQDSNCQEVHDLLK 90
P P P + ++ +++ + + +L N RK + V NLP D +E+ L +
Sbjct: 36 PPPPPIPANGQQASSQNEGLTIDLKNFRKPGEKTFTQRSRLFVGNLPPDITEEEMRKLFE 95
Query: 91 DYDLK-YCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDALLCITNV 149
Y ++ ++K F+ L A+ A RGK L V+ A L + N+
Sbjct: 96 KYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSASLTVRNL 155
Query: 150 PISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKA 199
P ++E EE +G +ER ++ + G G G VE+ K A KA
Sbjct: 156 PQYVSNELLEEAFSVFGQVERAVVIVDD-RGRPSGKGIVEFSGKPAARKA 204
Score = 39.3 bits (90), Expect = 0.012
Identities = 35/139 (25%), Positives = 54/139 (38%), Gaps = 20/139 (14%)
Query: 144 LCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARLEL 203
L + N+P T EE +L YG F+ KG+GF+ + A A++EL
Sbjct: 76 LFVGNLPPDITEEEMRKLFEKYGKAGEVFI------HKDKGFGFIRLETRTLAEIAKVEL 129
Query: 204 LGRQLGASALFAQWMDVNLLASELIHSKCLCIDKLPSDYRDS--EELLQIFSSVHKPVFC 261
L L ++ HS L + LP + EE +F V + V
Sbjct: 130 DNMPLRGKQLRVRF---------ACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAV-- 178
Query: 262 QLAQDEGSYVGGFAVVEYS 280
+ D+ G +VE+S
Sbjct: 179 -VIVDDRGRPSGKGIVEFS 196
>gi|38201714 ELAV-like 1 [Homo sapiens]
Length = 326
Score = 55.5 bits (132), Expect = 2e-07
Identities = 44/180 (24%), Positives = 82/180 (45%), Gaps = 5/180 (2%)
Query: 144 LCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARLEL 203
L + +P + T +E L + G +E L+ +V GHS GYGFV Y+ A +A L
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 204 LGRQLGASALFAQWMDVNLLASELIHSKCLCIDKLPSDYRDSEELLQIFSSVHKPVFCQL 263
G +L + + + +SE+I L I LP +++ +FS + + ++
Sbjct: 82 NGLRLQSKTIKVSYARP---SSEVIKDANLYISGLPRT-MTQKDVEDMFSRFGRIINSRV 137
Query: 264 AQDEGSYVG-GFAVVEYSTAEQAEEVQQAADGMTIKGSKVQVSFCAPGAPGRSTLAALIA 322
D+ + + G A + + +AEE + +G GS ++ P ++ AL++
Sbjct: 138 LVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNKNVALLS 197
Score = 43.1 bits (100), Expect = 8e-04
Identities = 34/145 (23%), Positives = 67/145 (46%), Gaps = 13/145 (8%)
Query: 68 RRKILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTA------FVTLLNGEQAQNAI 120
R ++V LPQ+ E+ L +++ + R+K FV + + A+ AI
Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78
Query: 121 QMFHQYSFRGKDLIVQL-QPT-----DALLCITNVPISFTSEEFEELVRAYGNIERCFLV 174
+ + K + V +P+ DA L I+ +P + T ++ E++ +G I ++
Sbjct: 79 NTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVL 138
Query: 175 YSEVTGHSKGYGFVEYMKKDFAAKA 199
+ TG S+G F+ + K+ A +A
Sbjct: 139 VDQTTGLSRGVAFIRFDKRSEAEEA 163
>gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 50.4 bits (119), Expect = 5e-06
Identities = 46/214 (21%), Positives = 85/214 (39%), Gaps = 20/214 (9%)
Query: 106 AFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDALL--------CITNVPISFTSEE 157
A+V + + A++A+ + +GK + + D L + N+ S ++
Sbjct: 55 AYVNFQHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKA 114
Query: 158 FEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARLELLGRQLGASALFAQW 217
+ V A+GNI C +V E SKGYGFV + + A +A ++ G L +F
Sbjct: 115 LYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQ 172
Query: 218 MDVNLLASELIHSKCLCIDKLPSDY-------RDSEELLQIFSSVHKPVFCQLAQDEGSY 270
+ ++ + P+ Y D E L +F + ++ DE
Sbjct: 173 FKSRKEREAELGARA---KEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK 229
Query: 271 VGGFAVVEYSTAEQAEEVQQAADGMTIKGSKVQV 304
GF V + E A++ +G + G ++ V
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 39.3 bits (90), Expect = 0.012
Identities = 65/290 (22%), Positives = 114/290 (39%), Gaps = 47/290 (16%)
Query: 57 RLQRMQRELSNRRK----ILVKNLPQDSNCQEVHDLLKDY-DLKYCYV--DRN--KRTAF 107
R+ QR+ S R+ I VKNL + N + ++D + + ++ C V D N K F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGF 142
Query: 108 VTLLNGEQAQNAIQMFHQYSFRGKDLIV----QLQPTDALL----------CITNVPISF 153
V E A+ AI+ + G+ + V + +A L I N
Sbjct: 143 VHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDM 202
Query: 154 TSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARLELLGRQLGASAL 213
E ++L +G V ++ +G SKG+GFV + + + A KA E+ G++L +
Sbjct: 203 DDERLKDLFGKFGPA-LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Query: 214 ------------------FAQWMDVNLLASELIHSKCLCIDKLPSDYRDSEELLQIFSSV 255
F Q + ++++ +D D D E L + FS
Sbjct: 262 YVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLD----DGIDDERLRKAFSPF 317
Query: 256 HKPVFCQLAQDEGSYVGGFAVVEYSTAEQAEEVQQAADGMTIKGSKVQVS 305
++ EG GF V +S+ E+A + +G + + V+
Sbjct: 318 GTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 366
Score = 33.5 bits (75), Expect = 0.66
Identities = 43/193 (22%), Positives = 75/193 (38%), Gaps = 35/193 (18%)
Query: 52 EEVAARLQRMQRELSNRRKILVKNLPQDSNCQEVHDLLKDY----DLKYCYVD--RNKRT 105
+E A L +E N + +KN +D + + + DL + +K + ++K
Sbjct: 177 KEREAELGARAKEFPN---VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGF 233
Query: 106 AFVTLLNGEQAQNAIQMFHQYSFRGKDLIV-----------QLQPT------DAL----- 143
FV+ E AQ A+ + GK + V +L+ T D +
Sbjct: 234 GFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQV 293
Query: 144 --LCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARL 201
L + N+ E + +G I ++ G SKG+GFV + + A KA
Sbjct: 294 VNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVT 351
Query: 202 ELLGRQLGASALF 214
E+ GR + L+
Sbjct: 352 EMNGRIVATKPLY 364
>gi|21450675 RNA binding motif protein 46 [Homo sapiens]
Length = 533
Score = 50.1 bits (118), Expect = 7e-06
Identities = 77/345 (22%), Positives = 133/345 (38%), Gaps = 28/345 (8%)
Query: 70 KILVKNLPQDSNCQEVHDLLK------DYDLKYCYVDRNKRTAFVTLLNGEQAQNAIQMF 123
++ V +P+D E+ + + ++ L + N+ AFV E+AQ AI++
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFSGENRGYAFVMYTTKEEAQLAIRIL 121
Query: 124 HQYSFR-GKDLIVQLQPTDALLCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHS 182
+ Y R GK + V + + L I +P EE + ++ +VY T +
Sbjct: 122 NNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKT 181
Query: 183 K--GYGFVEYMKKDFAAKARLELLGR--QLGASALFAQWMDVNLLASELIHSKCLCIDKL 238
K G+ FVEY AA AR +L+ QL + W D E + +
Sbjct: 182 KNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYVR 241
Query: 239 PSDYRDSEELLQIFSSVHKPVFCQLAQDEGSYVGGFAVVEYSTAEQAEEVQQAADGMTIK 298
+EE ++ + KP A + + +A V + E A +G I
Sbjct: 242 NLMISTTEETIKAEFNKFKPG----AVERVKKLRDYAFVHFFNREDAVAAMSVMNGKCID 297
Query: 299 GSKVQVSFCAPGAPGRSTLAALIAAQRVMHSNQKGLL-----PEPNPVQIMKSLNNPAML 353
G+ ++V+ P +T + Q + N + L+ E +P + K PA L
Sbjct: 298 GASIEVTLAKP-VNKENTWRQHLNGQ--ISPNSENLIVFANKEESHPKTLGKLPTLPARL 354
Query: 354 QVLLQP-----QLCGRAVKPAVLGTPHSLPHLMNPSISPAFLHLN 393
P + C P TP S+ L + + A +HL+
Sbjct: 355 NGQHSPSPPEVERCTYPFYPGTKLTPISMYSLKSNHFNSAVMHLD 399
>gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2,
64kDa, tau variant [Homo sapiens]
Length = 616
Score = 49.7 bits (117), Expect = 9e-06
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 146 ITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARLELLG 205
+ N+P T E+ +++ G++ LVY TG KGYGF EY ++ A A L G
Sbjct: 20 VGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNG 79
Query: 206 RQLGASAL 213
R+ AL
Sbjct: 80 REFSGRAL 87
>gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo
sapiens]
Length = 448
Score = 48.9 bits (115), Expect = 2e-05
Identities = 52/222 (23%), Positives = 90/222 (40%), Gaps = 35/222 (15%)
Query: 18 SAAGLGPGPGLRGQGPSAEAHEGAPDPMPAALHPEEVAARLQRMQRELSNRRKILVKNLP 77
S GLG PG G G P +P H + K+ + +P
Sbjct: 19 STNGLGSSPGSAGHMNGLSHSPGNPSTIPMKDH----------------DAIKLFIGQIP 62
Query: 78 QDSNCQEVHDLLKDYD-------LKYCYVDRNKRTAFVTLLNGEQAQNAIQMFH-QYSFR 129
++ + +++ L +++ LK + +K AF+T E A A H Q +
Sbjct: 63 RNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLP 122
Query: 130 GKDLIVQLQPTDA-------LLCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHS 182
G + +Q++P D+ L + + + ++ L A+GNIE C ++ G+S
Sbjct: 123 GMNRPIQVKPADSESRGEDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGP-DGNS 181
Query: 183 KGYGFVEYMKKDFAAKARLELLGRQL---GASALFAQWMDVN 221
KG FV+Y A A L G Q +S+L ++ D +
Sbjct: 182 KGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTD 223
>gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens]
Length = 577
Score = 48.5 bits (114), Expect = 2e-05
Identities = 24/68 (35%), Positives = 34/68 (50%)
Query: 146 ITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARLELLG 205
+ N+P T E+ +++ G + LVY TG KGYGF EY ++ A A L G
Sbjct: 20 VGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNG 79
Query: 206 RQLGASAL 213
R+ AL
Sbjct: 80 REFSGRAL 87
Score = 33.9 bits (76), Expect = 0.51
Identities = 61/250 (24%), Positives = 88/250 (35%), Gaps = 57/250 (22%)
Query: 246 EELLQIFSSVHKPVFCQLAQD-EGSYVGGFAVVEYSTAEQAEEVQQAADGMTIKGSKVQV 304
E+L IFS V V +L D E G+ EY E A + +G G ++V
Sbjct: 30 EQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 89
Query: 305 SFCAP------------GAPG-RSTLAALIAAQRVMHSNQKGL--LPEPNPVQIMKS--- 346
A GAP S I+ + S K + LP ++MK
Sbjct: 90 DNAASEKNKEELKSLGTGAPVIESPYGETISPEDAPESISKAVASLPPEQMFELMKQMKL 149
Query: 347 -------------LNNPAMLQVLLQPQLCGRAVKP----AVLGTPHSLPHLMNPSISPAF 389
L NP + LLQ Q+ R V P +L ++P L+ + P
Sbjct: 150 CVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVDPEIALKILHRQTNIPTLIAGNPQPVH 209
Query: 390 LHLNKAHQNLSHIPLAQQ-----QLMKFENIHTNNKPGLL-----------GEPPAVVLQ 433
+ S++ + QQ Q +H N P L+ G+ PA V
Sbjct: 210 ---GAGPGSGSNVSMNQQNPQAPQAQSLGGMHVNGAPPLMQASMQGGVPAPGQMPAAV-- 264
Query: 434 TALGIGSVLP 443
T G GS+ P
Sbjct: 265 TGPGPGSLAP 274
Score = 29.6 bits (65), Expect = 9.6
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 9 GGEGGAGLGSAAGLGPGPGLRGQGPSAEAHEGAPDPMPAALHPEEVAARLQR--MQR 63
GG G AA GPGPG G +A G P P ++ +V + R MQR
Sbjct: 252 GGVPAPGQMPAAVTGPGPGSLAPGGGMQAQVGMPGSGPVSMERGQVPMQDPRAAMQR 308
>gi|93277122 RNA binding motif protein 4 [Homo sapiens]
Length = 364
Score = 48.1 bits (113), Expect = 3e-05
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 13/134 (9%)
Query: 70 KILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFR 129
K+ + NLP+++ QE+ L + Y K D K FV + + A++AI+ H Y
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYG-KVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLH 61
Query: 130 GKDLIVQL----QPTDALLCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGY 185
G ++ V+ T L + N+ + T++E YG + C +V K Y
Sbjct: 62 GVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIV--------KDY 113
Query: 186 GFVEYMKKDFAAKA 199
FV + + A +A
Sbjct: 114 AFVHMERAEDAVEA 127
Score = 34.3 bits (77), Expect = 0.39
Identities = 41/165 (24%), Positives = 63/165 (38%), Gaps = 29/165 (17%)
Query: 144 LCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARLEL 203
L I N+P T +E L YG + C ++ K YGFV K A A L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNL 55
Query: 204 LGRQLGASALFAQWMDVNLLASELIHSKCLCIDKLP----SDYRDSEELLQIFSSVHKPV 259
+L +++N+ AS+ +K KL S ++EL F +
Sbjct: 56 HHYKL-------HGVNINVEASK---NKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVI 105
Query: 260 FCQLAQDEGSYVGGFAVVEYSTAEQAEEVQQAADGMTIKGSKVQV 304
C + +D +A V AE A E + D +G ++ V
Sbjct: 106 ECDIVKD-------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143
>gi|34452713 Ca2+-dependent secretion activator isoform 2 [Homo
sapiens]
Length = 1314
Score = 47.8 bits (112), Expect = 3e-05
Identities = 46/187 (24%), Positives = 77/187 (41%), Gaps = 22/187 (11%)
Query: 2 AAAAGDGGGEGGAGLGSAAGLGPGPGLRGQG------PSAEAHEGAPDPMPAALHPEEVA 55
A +AG GGG GAG G AG G G G G PS+ A G P ++ E+
Sbjct: 43 AGSAGLGGGGAGAGAGVGAGGGGGSGASSGGGAGGLQPSSRAGGGRPSSPSPSVVSEKEK 102
Query: 56 ARLQRMQRELSNRRK------ILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNKRTAFVT 109
L+R+Q+E R+K +++ + N ++ D+ + + + F
Sbjct: 103 EELERLQKEEEERKKRLQLYVFVMRCIAYPFNAKQPTDMARRQQKISKQQLQTVKDRFQA 162
Query: 110 LLNGEQA-------QNAIQMFHQYSFRGKDLIVQLQPTDALLCITNVPISFTSEEFEELV 162
LNGE NA+Q +++ F D + ++ + C N + E+ V
Sbjct: 163 FLNGETQIMADEAFMNAVQSYYEV-FLKSDRVARMVQSGG--CSANDSREVFKKHIEKRV 219
Query: 163 RAYGNIE 169
R+ I+
Sbjct: 220 RSLPEID 226
>gi|34452715 Ca2+-dependent secretion activator isoform 1 [Homo
sapiens]
Length = 1353
Score = 47.8 bits (112), Expect = 3e-05
Identities = 46/187 (24%), Positives = 77/187 (41%), Gaps = 22/187 (11%)
Query: 2 AAAAGDGGGEGGAGLGSAAGLGPGPGLRGQG------PSAEAHEGAPDPMPAALHPEEVA 55
A +AG GGG GAG G AG G G G G PS+ A G P ++ E+
Sbjct: 43 AGSAGLGGGGAGAGAGVGAGGGGGSGASSGGGAGGLQPSSRAGGGRPSSPSPSVVSEKEK 102
Query: 56 ARLQRMQRELSNRRK------ILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNKRTAFVT 109
L+R+Q+E R+K +++ + N ++ D+ + + + F
Sbjct: 103 EELERLQKEEEERKKRLQLYVFVMRCIAYPFNAKQPTDMARRQQKISKQQLQTVKDRFQA 162
Query: 110 LLNGEQA-------QNAIQMFHQYSFRGKDLIVQLQPTDALLCITNVPISFTSEEFEELV 162
LNGE NA+Q +++ F D + ++ + C N + E+ V
Sbjct: 163 FLNGETQIMADEAFMNAVQSYYEV-FLKSDRVARMVQSGG--CSANDSREVFKKHIEKRV 219
Query: 163 RAYGNIE 169
R+ I+
Sbjct: 220 RSLPEID 226
>gi|34452711 Ca2+-dependent secretion activator isoform 3 [Homo
sapiens]
Length = 1274
Score = 47.8 bits (112), Expect = 3e-05
Identities = 46/187 (24%), Positives = 77/187 (41%), Gaps = 22/187 (11%)
Query: 2 AAAAGDGGGEGGAGLGSAAGLGPGPGLRGQG------PSAEAHEGAPDPMPAALHPEEVA 55
A +AG GGG GAG G AG G G G G PS+ A G P ++ E+
Sbjct: 43 AGSAGLGGGGAGAGAGVGAGGGGGSGASSGGGAGGLQPSSRAGGGRPSSPSPSVVSEKEK 102
Query: 56 ARLQRMQRELSNRRK------ILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNKRTAFVT 109
L+R+Q+E R+K +++ + N ++ D+ + + + F
Sbjct: 103 EELERLQKEEEERKKRLQLYVFVMRCIAYPFNAKQPTDMARRQQKISKQQLQTVKDRFQA 162
Query: 110 LLNGEQA-------QNAIQMFHQYSFRGKDLIVQLQPTDALLCITNVPISFTSEEFEELV 162
LNGE NA+Q +++ F D + ++ + C N + E+ V
Sbjct: 163 FLNGETQIMADEAFMNAVQSYYEV-FLKSDRVARMVQSGG--CSANDSREVFKKHIEKRV 219
Query: 163 RAYGNIE 169
R+ I+
Sbjct: 220 RSLPEID 226
>gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo
sapiens]
Length = 370
Score = 47.8 bits (112), Expect = 3e-05
Identities = 54/215 (25%), Positives = 87/215 (40%), Gaps = 22/215 (10%)
Query: 106 AFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDALL--------CITNVPISFTSEE 157
A+V L AQ A+ + +GK + + DA L I N+ S ++
Sbjct: 54 AYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKT 113
Query: 158 FEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARLELLGRQLGASALFA-- 215
E A+G I V S+ G SKGY FV + + A +A E+ G+ L +F
Sbjct: 114 LYEHFSAFGKILSS-KVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGR 171
Query: 216 ------QWMDVNLLASELIHSKCLCIDKLPSDYRDSEELLQIFSSVHKPVFCQLAQDEGS 269
+ ++ ASE + + I D D E L +FS K + ++ D
Sbjct: 172 FKNRKDREAELRSKASEFTN---VYIKNFGGDM-DDERLKDVFSKYGKTLSVKVMTDSSG 227
Query: 270 YVGGFAVVEYSTAEQAEEVQQAADGMTIKGSKVQV 304
GF V + + E A++ + +G I G + V
Sbjct: 228 KSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFV 262
Score = 40.0 bits (92), Expect = 0.007
Identities = 67/283 (23%), Positives = 113/283 (39%), Gaps = 42/283 (14%)
Query: 57 RLQRMQRELSNRRK----ILVKNLPQDSNCQEVHDLLKDY----DLKYCYVDR-NKRTAF 107
RL QR+ RR + +KNL + + + +++ + K D+ +K AF
Sbjct: 82 RLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGSKGYAF 141
Query: 108 VTLLNGEQAQNAIQMFHQYSFRGKDLIV---------QLQPTDALLCITNVPIS-----F 153
V N A AI+ + +G + V + + TNV I
Sbjct: 142 VHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDM 201
Query: 154 TSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARLELLGRQLGASAL 213
E +++ YG V ++ +G SKG+GFV + + A KA E+ GR + +
Sbjct: 202 DDERLKDVFSKYGKT-LSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLI 260
Query: 214 FA--------QWMDVNLLASELIHSKC-------LCIDKLPSDYRDSEELLQIFSSVHKP 258
F + ++ + +L + L I L D D E+L FSS
Sbjct: 261 FVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNL-DDTIDDEKLRNEFSSFGSI 319
Query: 259 VFCQLAQDEGSYVGGFAVVEYSTAEQAEEVQQAADGMTIKGSK 301
++ Q+EG GF ++ +S+ E A + +G I GSK
Sbjct: 320 SRVKVMQEEGQ-SKGFGLICFSSPEDATKAMTEMNG-RILGSK 360
Score = 37.0 bits (84), Expect = 0.060
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 144 LCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARLEL 203
L I N+ + E+ ++G+I R ++ E G SKG+G + + + A KA E+
Sbjct: 295 LYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEE--GQSKGFGLICFSSPEDATKAMTEM 352
Query: 204 LGRQLGASAL 213
GR LG+ L
Sbjct: 353 NGRILGSKPL 362
Score = 31.2 bits (69), Expect = 3.3
Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 9/131 (6%)
Query: 177 EVTGHSKGYGFVEYMKKDFAAKARLELLGRQLGASALFAQW--MDVNLLASELIHSKCLC 234
+VT S GY +V +++ A KA + + ++ W D L S + +
Sbjct: 45 QVTRRSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKN 104
Query: 235 IDKLPSDYRDSEELLQIFSSVHKPVFCQ-LAQDEGSYVGGFAVVEYSTAEQAEEVQQAAD 293
+DK D++ L + FS+ K + + ++ D+GS G+A V + A+ + +
Sbjct: 105 LDK----SIDNKTLYEHFSAFGKILSSKVMSDDQGS--KGYAFVHFQNQSAADRAIEEMN 158
Query: 294 GMTIKGSKVQV 304
G +KG KV V
Sbjct: 159 GKLLKGCKVFV 169
>gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Homo
sapiens]
Length = 631
Score = 47.4 bits (111), Expect = 4e-05
Identities = 50/215 (23%), Positives = 84/215 (39%), Gaps = 22/215 (10%)
Query: 106 AFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDALL--------CITNVPISFTSEE 157
A+V A+ A+ + +GK + + D L I N+ S ++
Sbjct: 55 AYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKA 114
Query: 158 FEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARLELLGRQLGASALFA-- 215
+ A+GNI C +V E SKGY FV + ++ A KA ++ G L +F
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGR 172
Query: 216 ------QWMDVNLLASELIHSKCLCIDKLPSDYRDSEELLQIFSSVHKPVFCQLAQDEGS 269
+ ++ A E + K + D E L ++FS K + ++ +D
Sbjct: 173 FKSRKEREAELGAKAKEFTNVYI----KNFGEEVDDESLKELFSQFGKTLSVKVMRDPNG 228
Query: 270 YVGGFAVVEYSTAEQAEEVQQAADGMTIKGSKVQV 304
GF V Y E A + + +G I G + V
Sbjct: 229 KSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
Score = 39.3 bits (90), Expect = 0.012
Identities = 49/181 (27%), Positives = 78/181 (43%), Gaps = 24/181 (13%)
Query: 57 RLQRMQRELSNRRK----ILVKNLPQDSNCQEVHDLLKDY-DLKYCYV--DRN--KRTAF 107
R+ QR+ S R+ + +KNL + + + ++D + ++ C V D N K AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 108 VTLLNGEQAQNAIQMFHQYSFRGKDLIV----QLQPTDALLC-----ITNVPISFTSEEF 158
V E A AI+ + + + V + +A L TNV I EE
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEV 202
Query: 159 E-----ELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARLELLGRQLGASAL 213
+ EL +G V + G SKG+GFV Y K + A KA E+ G+++ +
Sbjct: 203 DDESLKELFSQFGKT-LSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Query: 214 F 214
F
Sbjct: 262 F 262
Score = 35.0 bits (79), Expect = 0.23
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 144 LCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARLEL 203
L I N+ + E+ + +G+I ++ + G SKG+GFV + + A KA E+
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 353
Query: 204 LGRQLGASALF 214
GR +G+ L+
Sbjct: 354 NGRIVGSKPLY 364
>gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo
sapiens]
Length = 644
Score = 47.4 bits (111), Expect = 4e-05
Identities = 50/215 (23%), Positives = 84/215 (39%), Gaps = 22/215 (10%)
Query: 106 AFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDALL--------CITNVPISFTSEE 157
A+V A+ A+ + +GK + + D L I N+ S ++
Sbjct: 55 AYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKA 114
Query: 158 FEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARLELLGRQLGASALFA-- 215
+ A+GNI C +V E SKGY FV + ++ A KA ++ G L +F
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGR 172
Query: 216 ------QWMDVNLLASELIHSKCLCIDKLPSDYRDSEELLQIFSSVHKPVFCQLAQDEGS 269
+ ++ A E + K + D E L ++FS K + ++ +D
Sbjct: 173 FKSRKEREAELGAKAKEFTNVYI----KNFGEEVDDESLKELFSQFGKTLSVKVMRDPNG 228
Query: 270 YVGGFAVVEYSTAEQAEEVQQAADGMTIKGSKVQV 304
GF V Y E A + + +G I G + V
Sbjct: 229 KSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
Score = 39.3 bits (90), Expect = 0.012
Identities = 49/181 (27%), Positives = 78/181 (43%), Gaps = 24/181 (13%)
Query: 57 RLQRMQRELSNRRK----ILVKNLPQDSNCQEVHDLLKDY-DLKYCYV--DRN--KRTAF 107
R+ QR+ S R+ + +KNL + + + ++D + ++ C V D N K AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 108 VTLLNGEQAQNAIQMFHQYSFRGKDLIV----QLQPTDALLC-----ITNVPISFTSEEF 158
V E A AI+ + + + V + +A L TNV I EE
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEV 202
Query: 159 E-----ELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARLELLGRQLGASAL 213
+ EL +G V + G SKG+GFV Y K + A KA E+ G+++ +
Sbjct: 203 DDESLKELFSQFGKT-LSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Query: 214 F 214
F
Sbjct: 262 F 262
Score = 35.0 bits (79), Expect = 0.23
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 144 LCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARLEL 203
L I N+ + E+ + +G+I ++ + G SKG+GFV + + A KA E+
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 353
Query: 204 LGRQLGASALF 214
GR +G+ L+
Sbjct: 354 NGRIVGSKPLY 364
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.131 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,688,849
Number of Sequences: 37866
Number of extensions: 1475856
Number of successful extensions: 10211
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 200
Number of HSP's that attempted gapping in prelim test: 8528
Number of HSP's gapped (non-prelim): 1394
length of query: 678
length of database: 18,247,518
effective HSP length: 109
effective length of query: 569
effective length of database: 14,120,124
effective search space: 8034350556
effective search space used: 8034350556
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.