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Search of human proteins with 5174681
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5174681 SIX homeobox 1 [Homo sapiens]
(284 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5174681 SIX homeobox 1 [Homo sapiens] 585 e-167
gi|219275578 SIX homeobox 2 [Homo sapiens] 435 e-122
gi|4885597 sine oculis homeobox homolog 3 [Homo sapiens] 280 1e-75
gi|186910311 SIX homeobox 6 [Homo sapiens] 280 1e-75
gi|142976638 sine oculis homeobox homolog 4 [Homo sapiens] 273 2e-73
gi|40354216 sine oculis homeobox homolog 5 [Homo sapiens] 223 1e-58
gi|27436887 pre-B-cell leukemia homeobox 2 [Homo sapiens] 53 3e-07
gi|15149472 pre-B-cell leukemia homeobox 4 [Homo sapiens] 52 8e-07
gi|4505623 pre-B-cell leukemia homeobox 1 [Homo sapiens] 51 1e-06
gi|239751129 PREDICTED: hypothetical protein XP_002347726 [Homo ... 51 1e-06
gi|239745620 PREDICTED: hypothetical protein XP_002344158 [Homo ... 51 1e-06
gi|34328941 TGFB-induced factor homeobox 2-like, X-linked [Homo ... 51 1e-06
gi|57863281 Meis1, myeloid ecotropic viral integration site 1 ho... 51 1e-06
gi|57863279 Meis1, myeloid ecotropic viral integration site 1 ho... 50 2e-06
gi|4505151 Meis homeobox 1 [Homo sapiens] 50 3e-06
gi|28178843 TG-interacting factor isoform a [Homo sapiens] 50 3e-06
gi|4507473 TG-interacting factor isoform c [Homo sapiens] 50 3e-06
gi|28178855 TG-interacting factor isoform d [Homo sapiens] 50 3e-06
gi|28178853 TG-interacting factor isoform d [Homo sapiens] 50 3e-06
gi|28178851 TG-interacting factor isoform d [Homo sapiens] 50 3e-06
gi|28178857 TG-interacting factor isoform d [Homo sapiens] 50 3e-06
gi|28178849 TG-interacting factor isoform c [Homo sapiens] 50 3e-06
gi|28178845 TG-interacting factor isoform b [Homo sapiens] 50 3e-06
gi|27502383 Meis homeobox 2 isoform h [Homo sapiens] 50 3e-06
gi|27502381 Meis homeobox 2 isoform g [Homo sapiens] 50 3e-06
gi|24762244 Meis homeobox 2 isoform a [Homo sapiens] 50 3e-06
gi|24762250 Meis homeobox 2 isoform d [Homo sapiens] 50 3e-06
gi|24762241 Meis homeobox 2 isoform c [Homo sapiens] 50 3e-06
gi|24762246 Meis homeobox 2 isoform b [Homo sapiens] 50 3e-06
gi|24762225 Meis homeobox 2 isoform f [Homo sapiens] 50 3e-06
>gi|5174681 SIX homeobox 1 [Homo sapiens]
Length = 284
Score = 585 bits (1509), Expect = e-167
Identities = 284/284 (100%), Positives = 284/284 (100%)
Query: 1 MSMLPSFGFTQEQVACVCEVLQQGGNLERLGRFLWSLPACDHLHKNESVLKAKAVVAFHR 60
MSMLPSFGFTQEQVACVCEVLQQGGNLERLGRFLWSLPACDHLHKNESVLKAKAVVAFHR
Sbjct: 1 MSMLPSFGFTQEQVACVCEVLQQGGNLERLGRFLWSLPACDHLHKNESVLKAKAVVAFHR 60
Query: 61 GNFRELYKILESHQFSPHNHPKLQQLWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRT 120
GNFRELYKILESHQFSPHNHPKLQQLWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRT
Sbjct: 61 GNFRELYKILESHQFSPHNHPKLQQLWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRT 120
Query: 121 IWDGEETSYCFKEKSRGVLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 180
IWDGEETSYCFKEKSRGVLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR
Sbjct: 121 IWDGEETSYCFKEKSRGVLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 180
Query: 181 AAEAKERENTENNNSSSNKQNQLSPLEGGKPLMSSSEEEFSPPQSPDQNSVLLLQGNMGH 240
AAEAKERENTENNNSSSNKQNQLSPLEGGKPLMSSSEEEFSPPQSPDQNSVLLLQGNMGH
Sbjct: 181 AAEAKERENTENNNSSSNKQNQLSPLEGGKPLMSSSEEEFSPPQSPDQNSVLLLQGNMGH 240
Query: 241 ARSSNYSLPGLTASQPSHGLQTHQHQLQDSLLGPLTSSLVDLGS 284
ARSSNYSLPGLTASQPSHGLQTHQHQLQDSLLGPLTSSLVDLGS
Sbjct: 241 ARSSNYSLPGLTASQPSHGLQTHQHQLQDSLLGPLTSSLVDLGS 284
>gi|219275578 SIX homeobox 2 [Homo sapiens]
Length = 291
Score = 435 bits (1118), Expect = e-122
Identities = 222/300 (74%), Positives = 247/300 (82%), Gaps = 25/300 (8%)
Query: 1 MSMLPSFGFTQEQVACVCEVLQQGGNLERLGRFLWSLPACDHLHKNESVLKAKAVVAFHR 60
MSMLP+FGFTQEQVACVCEVLQQGGN+ERLGRFLWSLPAC+HLHKNESVLKAKAVVAFHR
Sbjct: 1 MSMLPTFGFTQEQVACVCEVLQQGGNIERLGRFLWSLPACEHLHKNESVLKAKAVVAFHR 60
Query: 61 GNFRELYKILESHQFSPHNHPKLQQLWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRT 120
GNFRELYKILESHQFSPHNH KLQQLWLKAHY+EAEKLRGRPLGAVGKYRVRRKFPLPR+
Sbjct: 61 GNFRELYKILESHQFSPHNHAKLQQLWLKAHYIEAEKLRGRPLGAVGKYRVRRKFPLPRS 120
Query: 121 IWDGEETSYCFKEKSRGVLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 180
IWDGEETSYCFKEKSR VLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR
Sbjct: 121 IWDGEETSYCFKEKSRSVLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR 180
Query: 181 AAEAKERENTENNNSSSNKQNQLSPLEG-GKPLMSSSEEEFSPPQSPDQNS---VLLLQ- 235
AAEAKEREN EN+NS+S+ +PL G GK ++ SSE+E +P +PD +S LLL
Sbjct: 181 AAEAKERENNENSNSNSH-----NPLNGSGKSVLGSSEDEKTPSGTPDHSSSSPALLLSP 235
Query: 236 --------GNMGHARSSN---YSLPGLTASQPSHGLQTHQHQLQDSLLGPLTSSLVDLGS 284
++GH + +PG + P H H LQDS+L P++++LVDLGS
Sbjct: 236 PPPGLPSLHSLGHPPGPSAVPVPVPGGGGADPLQ----HHHGLQDSILNPMSANLVDLGS 291
>gi|4885597 sine oculis homeobox homolog 3 [Homo sapiens]
Length = 332
Score = 280 bits (715), Expect = 1e-75
Identities = 129/191 (67%), Positives = 160/191 (83%), Gaps = 4/191 (2%)
Query: 1 MSMLPSFGFTQEQVACVCEVLQQGGNLERLGRFLWSLP----ACDHLHKNESVLKAKAVV 56
M LP+ F+ EQVA VCE L++ G++ERLGRFLWSLP AC+ ++K+ES+L+A+AVV
Sbjct: 79 MFQLPTLNFSPEQVASVCETLEETGDIERLGRFLWSLPVAPGACEAINKHESILRARAVV 138
Query: 57 AFHRGNFRELYKILESHQFSPHNHPKLQQLWLKAHYVEAEKLRGRPLGAVGKYRVRRKFP 116
AFH GNFR+LY ILE+H+F+ +H KLQ +WL+AHY EAEKLRGRPLG V KYRVR+KFP
Sbjct: 139 AFHTGNFRDLYHILENHKFTKESHGKLQAMWLEAHYQEAEKLRGRPLGPVDKYRVRKKFP 198
Query: 117 LPRTIWDGEETSYCFKEKSRGVLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRR 176
LPRTIWDGE+ ++CFKE++R +LREWY +PYP+P +KRELA+ATGLT TQV NWFKNRR
Sbjct: 199 LPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPSKKRELAQATGLTPTQVGNWFKNRR 258
Query: 177 QRDRAAEAKER 187
QRDRAA AK R
Sbjct: 259 QRDRAAAAKNR 269
>gi|186910311 SIX homeobox 6 [Homo sapiens]
Length = 246
Score = 280 bits (715), Expect = 1e-75
Identities = 131/191 (68%), Positives = 159/191 (83%), Gaps = 4/191 (2%)
Query: 1 MSMLPSFGFTQEQVACVCEVLQQGGNLERLGRFLWSLP----ACDHLHKNESVLKAKAVV 56
M LP F+ +QVA VCE L++ G++ERLGRFLWSLP AC+ L+KNESVL+A+A+V
Sbjct: 1 MFQLPILNFSPQQVAGVCETLEESGDVERLGRFLWSLPVAPAACEALNKNESVLRARAIV 60
Query: 57 AFHRGNFRELYKILESHQFSPHNHPKLQQLWLKAHYVEAEKLRGRPLGAVGKYRVRRKFP 116
AFH GN+RELY ILE+H+F+ +H KLQ LWL+AHY EAEKLRGRPLG V KYRVR+KFP
Sbjct: 61 AFHGGNYRELYHILENHKFTKESHAKLQALWLEAHYQEAEKLRGRPLGPVDKYRVRKKFP 120
Query: 117 LPRTIWDGEETSYCFKEKSRGVLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRR 176
LPRTIWDGE+ ++CFKE++R +LREWY +PYP+P +KRELA+ATGLT TQV NWFKNRR
Sbjct: 121 LPRTIWDGEQKTHCFKERTRHLLREWYLQDPYPNPSKKRELAQATGLTPTQVGNWFKNRR 180
Query: 177 QRDRAAEAKER 187
QRDRAA AK R
Sbjct: 181 QRDRAAAAKNR 191
>gi|142976638 sine oculis homeobox homolog 4 [Homo sapiens]
Length = 781
Score = 273 bits (697), Expect = 2e-73
Identities = 139/214 (64%), Positives = 158/214 (73%), Gaps = 9/214 (4%)
Query: 9 FTQEQVACVCEVLQQGGNLERLGRFLWSLPACDHLHKNESVLKAKAVVAFHRGNFRELYK 68
F+ + VACVCE LQQGGNL+RL RFLWSLP D L NES+LKA+A+VAFH+G + ELY
Sbjct: 108 FSPDHVACVCEALQQGGNLDRLARFLWSLPQSDLLRGNESLLKARALVAFHQGIYPELYS 167
Query: 69 ILESHQFSPHNHPKLQQLWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTIWDGEETS 128
ILESH F NHP LQQLW KA Y EAE+ RGRPLGAV KYR+RRKFPLPRTIWDGEET
Sbjct: 168 ILESHSFESANHPLLQQLWYKARYTEAERARGRPLGAVDKYRLRRKFPLPRTIWDGEETV 227
Query: 129 YCFKEKSRGVLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR-AAEAKER 187
YCFKEKSR L+E Y N YPSP EKR LA+ TGL+ TQVSNWFKNRRQRDR +E + +
Sbjct: 228 YCFKEKSRNALKELYKQNRYPSPAEKRHLAKITGLSLTQVSNWFKNRRQRDRNPSETQSK 287
Query: 188 ENTENNNS----SSNKQNQLSPLEGGKPLMSSSE 217
++ N S SS LSP PL SSS+
Sbjct: 288 SESDGNPSTEDESSKGHEDLSP----HPLSSSSD 317
>gi|40354216 sine oculis homeobox homolog 5 [Homo sapiens]
Length = 739
Score = 223 bits (569), Expect = 1e-58
Identities = 120/248 (48%), Positives = 159/248 (64%), Gaps = 12/248 (4%)
Query: 9 FTQEQVACVCEVLQQGGNLERLGRFLWSLPACDHLHKNESVLKAKAVVAFHRGNFRELYK 68
F+ EQVACVCE L Q G+ RL RFL +LP + L ++ VL+A+A+VAF RG + ELY+
Sbjct: 86 FSPEQVACVCEALLQAGHAGRLSRFLGALPPAERLRGSDPVLRARALVAFQRGEYAELYR 145
Query: 69 ILESHQFSPHNHPKLQQLWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTIWDGEETS 128
+LES F +H LQ L+L+A Y EAE+ RGR LGAV KYR+R+KFPLP+TIWDGEET
Sbjct: 146 LLESRPFPAAHHAFLQDLYLRARYHEAERARGRALGAVDKYRLRKKFPLPKTIWDGEETV 205
Query: 129 YCFKEKSRGVLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR--AAEAKE 186
YCFKE+SR L+ Y N YP+P EKR LA TGL+ TQVSNWFKNRRQRDR A
Sbjct: 206 YCFKERSRAALKACYRGNRYPTPDEKRRLATLTGLSLTQVSNWFKNRRQRDRTGAGGGAP 265
Query: 187 RENTENNNSSSNKQNQLSPLE---GGKPLMSSSEEEFS-------PPQSPDQNSVLLLQG 236
++ + N ++ ++ SP + G P+ + + + S PP +S +L+ G
Sbjct: 266 CKSESDGNPTTEDESSRSPEDLERGAAPVSAEAAAQGSIFLAGTGPPAPCPASSSILVNG 325
Query: 237 NMGHARSS 244
+ A S
Sbjct: 326 SFLAASGS 333
>gi|27436887 pre-B-cell leukemia homeobox 2 [Homo sapiens]
Length = 430
Score = 53.1 bits (126), Expect = 3e-07
Identities = 38/110 (34%), Positives = 55/110 (50%), Gaps = 11/110 (10%)
Query: 131 FKEKSRGVLREW-YAH--NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAKER 187
F +++ VL E+ Y+H NPYPS K ELA+ G+T +QVSNWF N+R R + K +
Sbjct: 251 FSKQATEVLNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQ 310
Query: 188 ENTENNNSSSNKQNQLSPLEGGKPLMSSSEEEFSPPQSPDQNSVLLLQGN 237
E + + +S +GG SS +PP S L G+
Sbjct: 311 EEA----NIYAVKTAVSVTQGGHSRTSSP----TPPSSAGSGGSFNLSGS 352
>gi|15149472 pre-B-cell leukemia homeobox 4 [Homo sapiens]
Length = 374
Score = 51.6 bits (122), Expect = 8e-07
Identities = 29/61 (47%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Query: 131 FKEKSRGVLREW-YAH--NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAKER 187
F +++ VL E+ Y+H NPYPS K ELA GLT +QVSNWF N+R R + K +
Sbjct: 217 FSKQATEVLNEYFYSHLNNPYPSEEAKEELARKGGLTISQVSNWFGNKRIRYKKNMGKFQ 276
Query: 188 E 188
E
Sbjct: 277 E 277
>gi|4505623 pre-B-cell leukemia homeobox 1 [Homo sapiens]
Length = 430
Score = 51.2 bits (121), Expect = 1e-06
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 131 FKEKSRGVLREW-YAH--NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAKER 187
F +++ +L E+ Y+H NPYPS K ELA+ G+T +QVSNWF N+R R + K +
Sbjct: 240 FNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQ 299
Query: 188 E 188
E
Sbjct: 300 E 300
>gi|239751129 PREDICTED: hypothetical protein XP_002347726 [Homo
sapiens]
Length = 345
Score = 51.2 bits (121), Expect = 1e-06
Identities = 20/80 (25%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 131 FKEKSRGVLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAK---ER 187
+ + + +L+ W+ H+P+P + +LA+ G+ + + WFKN R + R + K E+
Sbjct: 22 YNQSQKDILQSWFQHDPFPDKAAREQLAKEIGVPESNIQVWFKNYRVKQRKLDYKCFSEK 81
Query: 188 ENTENNNSSSNKQNQLSPLE 207
+ T+ ++ S + + P E
Sbjct: 82 DQTQGHDQSQHLTQEYLPKE 101
Score = 36.2 bits (82), Expect = 0.034
Identities = 25/99 (25%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 85 QLWLKAHYVEAEKL-------RGRPLGAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRG 137
Q+W K + V+ KL + + G + +++ LP+ ++T + +K+R
Sbjct: 60 QVWFKNYRVKQRKLDYKCFSEKDQTQGHDQSQHLTQEY-LPKEARQ-KQTFITWTQKNR- 116
Query: 138 VLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRR 176
L + + NP+P +++LAE TGL +++ WF+ +R
Sbjct: 117 -LVQAFERNPFPDIATRKKLAEQTGLQESRIQMWFQKQR 154
>gi|239745620 PREDICTED: hypothetical protein XP_002344158 [Homo
sapiens]
Length = 345
Score = 51.2 bits (121), Expect = 1e-06
Identities = 20/80 (25%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 131 FKEKSRGVLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAK---ER 187
+ + + +L+ W+ H+P+P + +LA+ G+ + + WFKN R + R + K E+
Sbjct: 22 YNQSQKDILQSWFQHDPFPDKAAREQLAKEIGVPESNIQVWFKNYRVKQRKLDYKCFSEK 81
Query: 188 ENTENNNSSSNKQNQLSPLE 207
+ T+ ++ S + + P E
Sbjct: 82 DQTQGHDQSQHLTQEYLPKE 101
Score = 36.2 bits (82), Expect = 0.034
Identities = 25/99 (25%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 85 QLWLKAHYVEAEKL-------RGRPLGAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRG 137
Q+W K + V+ KL + + G + +++ LP+ ++T + +K+R
Sbjct: 60 QVWFKNYRVKQRKLDYKCFSEKDQTQGHDQSQHLTQEY-LPKEARQ-KQTFITWTQKNR- 116
Query: 138 VLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRR 176
L + + NP+P +++LAE TGL +++ WF+ +R
Sbjct: 117 -LVQAFERNPFPDIATRKKLAEQTGLQESRIQMWFQKQR 154
>gi|34328941 TGFB-induced factor homeobox 2-like, X-linked [Homo
sapiens]
Length = 241
Score = 51.2 bits (121), Expect = 1e-06
Identities = 43/150 (28%), Positives = 66/150 (44%), Gaps = 14/150 (9%)
Query: 138 VLREW-YAHN--PYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAKERENTENNN 194
+LR+W Y H YPS EK+ L+E T L+ Q+SNWF N R+R ++R N
Sbjct: 64 ILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQRRNDPIIG 123
Query: 195 SSSNKQNQLSPLEGGKPLMSSSEEEFSPPQSPDQNSVL----LLQGNMGHARSSNYSLPG 250
+ K + L+ +S S P PD L L +G M + + P
Sbjct: 124 HKTGKDAHATHLQS----TEASVPAKSGPSGPDNVQSLPLWPLPKGQMSREKQPD---PE 176
Query: 251 LTASQPSHGLQTHQHQLQDSLLGPLTSSLV 280
SQ G+ + +++ S+ P + LV
Sbjct: 177 SAPSQKLTGIAQPKKKVKVSVTSPSSPELV 206
>gi|57863281 Meis1, myeloid ecotropic viral integration site 1
homolog 3 isoform 1 [Homo sapiens]
Length = 421
Score = 50.8 bits (120), Expect = 1e-06
Identities = 20/37 (54%), Positives = 28/37 (75%)
Query: 142 WYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 178
W+ +PYPS +K++LA+ TGLT QV+NWF N R+R
Sbjct: 329 WWLQHPYPSEEQKKQLAQDTGLTILQVNNWFINARRR 365
>gi|57863279 Meis1, myeloid ecotropic viral integration site 1
homolog 3 isoform 2 [Homo sapiens]
Length = 358
Score = 50.1 bits (118), Expect = 2e-06
Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 3/51 (5%)
Query: 131 FKEKSRGVLREW---YAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 178
F + + ++R W + +PYPS +K++LA+ TGLT QV+NWF N R+R
Sbjct: 252 FPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRR 302
>gi|4505151 Meis homeobox 1 [Homo sapiens]
Length = 390
Score = 49.7 bits (117), Expect = 3e-06
Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 3/51 (5%)
Query: 131 FKEKSRGVLREW---YAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 178
F + + ++R W + +PYPS +K++LA+ TGLT QV+NWF N R+R
Sbjct: 279 FPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRR 329
>gi|28178843 TG-interacting factor isoform a [Homo sapiens]
Length = 401
Score = 49.7 bits (117), Expect = 3e-06
Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 3/140 (2%)
Query: 133 EKSRGVLREW---YAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAKEREN 189
++S +LR+W + +N YPS +EK L++ T L+T QV NWF N R+R ++
Sbjct: 173 KESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGK 232
Query: 190 TENNNSSSNKQNQLSPLEGGKPLMSSSEEEFSPPQSPDQNSVLLLQGNMGHARSSNYSLP 249
N + S + ++S + +M + ++P + +G S S P
Sbjct: 233 DPNQFTISRRGAKISETSSVESVMGIKNFMPALEETPFHSCTAGPNPTLGRPLSPKPSSP 292
Query: 250 GLTASQPSHGLQTHQHQLQD 269
G ++PS T L+D
Sbjct: 293 GSVLARPSVICHTTVTALKD 312
>gi|4507473 TG-interacting factor isoform c [Homo sapiens]
Length = 272
Score = 49.7 bits (117), Expect = 3e-06
Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 3/140 (2%)
Query: 133 EKSRGVLREW---YAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAKEREN 189
++S +LR+W + +N YPS +EK L++ T L+T QV NWF N R+R ++
Sbjct: 44 KESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGK 103
Query: 190 TENNNSSSNKQNQLSPLEGGKPLMSSSEEEFSPPQSPDQNSVLLLQGNMGHARSSNYSLP 249
N + S + ++S + +M + ++P + +G S S P
Sbjct: 104 DPNQFTISRRGAKISETSSVESVMGIKNFMPALEETPFHSCTAGPNPTLGRPLSPKPSSP 163
Query: 250 GLTASQPSHGLQTHQHQLQD 269
G ++PS T L+D
Sbjct: 164 GSVLARPSVICHTTVTALKD 183
>gi|28178855 TG-interacting factor isoform d [Homo sapiens]
Length = 252
Score = 49.7 bits (117), Expect = 3e-06
Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 3/140 (2%)
Query: 133 EKSRGVLREW---YAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAKEREN 189
++S +LR+W + +N YPS +EK L++ T L+T QV NWF N R+R ++
Sbjct: 24 KESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGK 83
Query: 190 TENNNSSSNKQNQLSPLEGGKPLMSSSEEEFSPPQSPDQNSVLLLQGNMGHARSSNYSLP 249
N + S + ++S + +M + ++P + +G S S P
Sbjct: 84 DPNQFTISRRGAKISETSSVESVMGIKNFMPALEETPFHSCTAGPNPTLGRPLSPKPSSP 143
Query: 250 GLTASQPSHGLQTHQHQLQD 269
G ++PS T L+D
Sbjct: 144 GSVLARPSVICHTTVTALKD 163
>gi|28178853 TG-interacting factor isoform d [Homo sapiens]
Length = 252
Score = 49.7 bits (117), Expect = 3e-06
Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 3/140 (2%)
Query: 133 EKSRGVLREW---YAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAKEREN 189
++S +LR+W + +N YPS +EK L++ T L+T QV NWF N R+R ++
Sbjct: 24 KESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGK 83
Query: 190 TENNNSSSNKQNQLSPLEGGKPLMSSSEEEFSPPQSPDQNSVLLLQGNMGHARSSNYSLP 249
N + S + ++S + +M + ++P + +G S S P
Sbjct: 84 DPNQFTISRRGAKISETSSVESVMGIKNFMPALEETPFHSCTAGPNPTLGRPLSPKPSSP 143
Query: 250 GLTASQPSHGLQTHQHQLQD 269
G ++PS T L+D
Sbjct: 144 GSVLARPSVICHTTVTALKD 163
>gi|28178851 TG-interacting factor isoform d [Homo sapiens]
Length = 252
Score = 49.7 bits (117), Expect = 3e-06
Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 3/140 (2%)
Query: 133 EKSRGVLREW---YAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAKEREN 189
++S +LR+W + +N YPS +EK L++ T L+T QV NWF N R+R ++
Sbjct: 24 KESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGK 83
Query: 190 TENNNSSSNKQNQLSPLEGGKPLMSSSEEEFSPPQSPDQNSVLLLQGNMGHARSSNYSLP 249
N + S + ++S + +M + ++P + +G S S P
Sbjct: 84 DPNQFTISRRGAKISETSSVESVMGIKNFMPALEETPFHSCTAGPNPTLGRPLSPKPSSP 143
Query: 250 GLTASQPSHGLQTHQHQLQD 269
G ++PS T L+D
Sbjct: 144 GSVLARPSVICHTTVTALKD 163
>gi|28178857 TG-interacting factor isoform d [Homo sapiens]
Length = 252
Score = 49.7 bits (117), Expect = 3e-06
Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 3/140 (2%)
Query: 133 EKSRGVLREW---YAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAKEREN 189
++S +LR+W + +N YPS +EK L++ T L+T QV NWF N R+R ++
Sbjct: 24 KESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGK 83
Query: 190 TENNNSSSNKQNQLSPLEGGKPLMSSSEEEFSPPQSPDQNSVLLLQGNMGHARSSNYSLP 249
N + S + ++S + +M + ++P + +G S S P
Sbjct: 84 DPNQFTISRRGAKISETSSVESVMGIKNFMPALEETPFHSCTAGPNPTLGRPLSPKPSSP 143
Query: 250 GLTASQPSHGLQTHQHQLQD 269
G ++PS T L+D
Sbjct: 144 GSVLARPSVICHTTVTALKD 163
>gi|28178849 TG-interacting factor isoform c [Homo sapiens]
Length = 272
Score = 49.7 bits (117), Expect = 3e-06
Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 3/140 (2%)
Query: 133 EKSRGVLREW---YAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAKEREN 189
++S +LR+W + +N YPS +EK L++ T L+T QV NWF N R+R ++
Sbjct: 44 KESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGK 103
Query: 190 TENNNSSSNKQNQLSPLEGGKPLMSSSEEEFSPPQSPDQNSVLLLQGNMGHARSSNYSLP 249
N + S + ++S + +M + ++P + +G S S P
Sbjct: 104 DPNQFTISRRGAKISETSSVESVMGIKNFMPALEETPFHSCTAGPNPTLGRPLSPKPSSP 163
Query: 250 GLTASQPSHGLQTHQHQLQD 269
G ++PS T L+D
Sbjct: 164 GSVLARPSVICHTTVTALKD 183
>gi|28178845 TG-interacting factor isoform b [Homo sapiens]
Length = 286
Score = 49.7 bits (117), Expect = 3e-06
Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 3/140 (2%)
Query: 133 EKSRGVLREW---YAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAKEREN 189
++S +LR+W + +N YPS +EK L++ T L+T QV NWF N R+R ++
Sbjct: 58 KESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGK 117
Query: 190 TENNNSSSNKQNQLSPLEGGKPLMSSSEEEFSPPQSPDQNSVLLLQGNMGHARSSNYSLP 249
N + S + ++S + +M + ++P + +G S S P
Sbjct: 118 DPNQFTISRRGAKISETSSVESVMGIKNFMPALEETPFHSCTAGPNPTLGRPLSPKPSSP 177
Query: 250 GLTASQPSHGLQTHQHQLQD 269
G ++PS T L+D
Sbjct: 178 GSVLARPSVICHTTVTALKD 197
>gi|27502383 Meis homeobox 2 isoform h [Homo sapiens]
Length = 306
Score = 49.7 bits (117), Expect = 3e-06
Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 3/51 (5%)
Query: 131 FKEKSRGVLREW---YAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 178
F + + ++R W + +PYPS +K++LA+ TGLT QV+NWF N R+R
Sbjct: 195 FPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRR 245
>gi|27502381 Meis homeobox 2 isoform g [Homo sapiens]
Length = 388
Score = 49.7 bits (117), Expect = 3e-06
Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 3/51 (5%)
Query: 131 FKEKSRGVLREW---YAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 178
F + + ++R W + +PYPS +K++LA+ TGLT QV+NWF N R+R
Sbjct: 270 FPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRR 320
>gi|24762244 Meis homeobox 2 isoform a [Homo sapiens]
Length = 401
Score = 49.7 bits (117), Expect = 3e-06
Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 3/51 (5%)
Query: 131 FKEKSRGVLREW---YAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 178
F + + ++R W + +PYPS +K++LA+ TGLT QV+NWF N R+R
Sbjct: 283 FPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRR 333
>gi|24762250 Meis homeobox 2 isoform d [Homo sapiens]
Length = 470
Score = 49.7 bits (117), Expect = 3e-06
Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 3/51 (5%)
Query: 131 FKEKSRGVLREW---YAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 178
F + + ++R W + +PYPS +K++LA+ TGLT QV+NWF N R+R
Sbjct: 283 FPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRR 333
>gi|24762241 Meis homeobox 2 isoform c [Homo sapiens]
Length = 477
Score = 49.7 bits (117), Expect = 3e-06
Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 3/51 (5%)
Query: 131 FKEKSRGVLREW---YAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 178
F + + ++R W + +PYPS +K++LA+ TGLT QV+NWF N R+R
Sbjct: 283 FPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRR 333
>gi|24762246 Meis homeobox 2 isoform b [Homo sapiens]
Length = 394
Score = 49.7 bits (117), Expect = 3e-06
Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 3/51 (5%)
Query: 131 FKEKSRGVLREW---YAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 178
F + + ++R W + +PYPS +K++LA+ TGLT QV+NWF N R+R
Sbjct: 283 FPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRR 333
>gi|24762225 Meis homeobox 2 isoform f [Homo sapiens]
Length = 381
Score = 49.7 bits (117), Expect = 3e-06
Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 3/51 (5%)
Query: 131 FKEKSRGVLREW---YAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 178
F + + ++R W + +PYPS +K++LA+ TGLT QV+NWF N R+R
Sbjct: 270 FPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRR 320
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.130 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,882,326
Number of Sequences: 37866
Number of extensions: 554234
Number of successful extensions: 2207
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 1804
Number of HSP's gapped (non-prelim): 468
length of query: 284
length of database: 18,247,518
effective HSP length: 101
effective length of query: 183
effective length of database: 14,423,052
effective search space: 2639418516
effective search space used: 2639418516
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.