Guide to the Human Genome
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Name: LOC100289629 Sequence: fasta or formatted (345aa) NCBI GI: 239745620
Description:

PREDICTED: hypothetical protein XP_002344158

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.5         12           2
 C cysteine            0.9          3           1
 D aspartate           5.2         18           2
 E glutamate           7.0         24           2
 F phenylalanine       4.3         15           1
 G glycine             4.1         14           2
 H histidine           4.3         15           1
 I isoleucine          4.6         16           2
 K lysine              6.4         22           2
 L leucine             9.0         31           2
 M methionine          1.7          6           1
 N asparagine          4.3         15           1
 P proline             8.1         28           2
 Q glutamine          11.3         39           2
 R arginine            4.6         16           1
 S serine              7.0         24           3
 T threonine           5.2         18           1
 V valine              3.5         12           1
 W tryptophan          2.9         10           1
 Y tyrosine            2.0          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344158 
LOC100291517          1.000   PREDICTED: hypothetical protein XP_002347726 
LOC100288801          0.121   PREDICTED: hypothetical protein XP_002342402 
LOC440017             0.117   PREDICTED: similar to double homeobox, 4 
LOC728022             0.117   PREDICTED: similar to double homeobox, 4 
LOC100289581          0.117   PREDICTED: hypothetical protein XP_002343082 
LOC399839             0.117   PREDICTED: similar to double homeobox, 4 
LOC440013             0.117   PREDICTED: similar to double homeobox, 4 
LOC653548             0.117   PREDICTED: double homeobox, 4-like 
LOC441056             0.117   PREDICTED: double homeobox, 4-like 
DUX4                  0.117   double homeobox, 4 
LOC728410             0.117   double homeobox, 4-like 
LOC653543             0.117   double homeobox, 4-like 
LOC653545             0.117   double homeobox, 4-like 
LOC653544             0.117   double homeobox, 4-like 
LOC440014             0.115   PREDICTED: similar to double homeobox, 4 
DUXA                  0.114   double homeobox A 
LOC100134409          0.107   PREDICTED: similar to facioscapulohumeral muscular ...
DUX5                  0.104   double homeobox, 5 
DUX1                  0.104   double homeobox, 1 
DUX3                  0.102   double homeobox, 3 
HPX-2                 0.101   PREDICTED: similar to double homeobox, 4 
LOC652586             0.098   PREDICTED: similar to facioscapulohumeral muscular ...
LOC652119             0.098   PREDICTED: similar to putative DUX4 protein 
LOC652119             0.097   PREDICTED: similar to putative DUX4 protein 
LOC100290743          0.095   PREDICTED: hypothetical protein XP_002346688 
HPX-2                 0.092   PREDICTED: similar to double homeobox, 4 
LOC100292644          0.054   PREDICTED: similar to facioscapulohumeral muscular ...
LOC100290397          0.053   PREDICTED: hypothetical protein XP_002348309, parti...
PRRX2                 0.051   paired related homeobox 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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