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Search of human proteins with 13376880
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13376880 THUMP domain containing 2 [Homo sapiens]
(473 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13376880 THUMP domain containing 2 [Homo sapiens] 936 0.0
gi|166197708 THUMP domain containing 3 [Homo sapiens] 133 3e-31
gi|166197706 THUMP domain containing 3 [Homo sapiens] 133 3e-31
gi|223556010 protein arginine methyltransferase 3 isoform 3 [Hom... 43 7e-04
gi|223556008 protein arginine methyltransferase 3 isoform 2 [Hom... 43 7e-04
gi|44771198 protein arginine methyltransferase 3 isoform 1 [Homo... 43 7e-04
gi|187761324 shootin1 isoform a [Homo sapiens] 39 0.013
gi|50511340 shootin1 isoform b [Homo sapiens] 39 0.013
gi|239756241 PREDICTED: golgi autoantigen, golgin subfamily a-li... 38 0.017
gi|154354979 myosin X [Homo sapiens] 38 0.017
gi|223634475 golgi autoantigen, golgin subfamily a, 6D [Homo sap... 37 0.030
gi|51472437 PREDICTED: golgi autoantigen, golgin subfamily a, 6C... 37 0.030
gi|94538359 golgi autoantigen, golgin subfamily a, 6B [Homo sapi... 37 0.039
gi|34147403 intraflagellar transport 81-like isoform 2 [Homo sap... 36 0.066
gi|146133848 golgi autoantigen, golgin subfamily a, 6 [Homo sapi... 36 0.066
gi|94420683 tRNA methyltransferase 11 [Homo sapiens] 36 0.087
gi|34304370 dystrobrevin binding protein 1 isoform c [Homo sapiens] 35 0.11
gi|34304368 dystrobrevin binding protein 1 isoform b [Homo sapiens] 35 0.11
gi|19549327 dystrobrevin binding protein 1 isoform a [Homo sapiens] 35 0.11
gi|41152097 DNA segment on chromosome X and Y (unique) 155 expre... 35 0.11
gi|41322923 plectin 1 isoform 11 [Homo sapiens] 35 0.11
gi|41322914 plectin 1 isoform 10 [Homo sapiens] 35 0.11
gi|41322919 plectin 1 isoform 8 [Homo sapiens] 35 0.11
gi|41322910 plectin 1 isoform 7 [Homo sapiens] 35 0.11
gi|41322916 plectin 1 isoform 6 [Homo sapiens] 35 0.11
gi|41322908 plectin 1 isoform 3 [Homo sapiens] 35 0.11
gi|41322912 plectin 1 isoform 2 [Homo sapiens] 35 0.11
gi|47607492 plectin 1 isoform 1 [Homo sapiens] 35 0.11
gi|190341068 forkhead-associated (FHA) phosphopeptide binding do... 35 0.11
gi|88759339 aster-associated protein [Homo sapiens] 35 0.11
>gi|13376880 THUMP domain containing 2 [Homo sapiens]
Length = 473
Score = 936 bits (2420), Expect = 0.0
Identities = 473/473 (100%), Positives = 473/473 (100%)
Query: 1 MREVRARLAATQVEYISGKVFFTTCSDLNMLKKLKSAERLFLLIKKQFPLIISSVSKGKI 60
MREVRARLAATQVEYISGKVFFTTCSDLNMLKKLKSAERLFLLIKKQFPLIISSVSKGKI
Sbjct: 1 MREVRARLAATQVEYISGKVFFTTCSDLNMLKKLKSAERLFLLIKKQFPLIISSVSKGKI 60
Query: 61 FNEMQRLINEDPGSWLNAISIWKNLLELDAKKEKLSQRDDNQLKRKVGENEIIAKKLKIE 120
FNEMQRLINEDPGSWLNAISIWKNLLELDAKKEKLSQRDDNQLKRKVGENEIIAKKLKIE
Sbjct: 61 FNEMQRLINEDPGSWLNAISIWKNLLELDAKKEKLSQRDDNQLKRKVGENEIIAKKLKIE 120
Query: 121 QMQKIEENRDCQLEKQIKEETLEQRDFTTKSEKFQEEEFQNDIEKAIDTHNQNDLTFRVS 180
QMQKIEENRDCQLEKQIKEETLEQRDFTTKSEKFQEEEFQNDIEKAIDTHNQNDLTFRVS
Sbjct: 121 QMQKIEENRDCQLEKQIKEETLEQRDFTTKSEKFQEEEFQNDIEKAIDTHNQNDLTFRVS 180
Query: 181 CRCSGTIGKAFTAQEVGKVIGIAIMKHFGWKADLRNPQLEIFIHLNDIYSVVGIPVFRVS 240
CRCSGTIGKAFTAQEVGKVIGIAIMKHFGWKADLRNPQLEIFIHLNDIYSVVGIPVFRVS
Sbjct: 181 CRCSGTIGKAFTAQEVGKVIGIAIMKHFGWKADLRNPQLEIFIHLNDIYSVVGIPVFRVS 240
Query: 241 LASRAYIKTAGLRSTIAWAMASLADIKAGAFVLDPMCGLGTILLEAAKEWPDVYYVGADV 300
LASRAYIKTAGLRSTIAWAMASLADIKAGAFVLDPMCGLGTILLEAAKEWPDVYYVGADV
Sbjct: 241 LASRAYIKTAGLRSTIAWAMASLADIKAGAFVLDPMCGLGTILLEAAKEWPDVYYVGADV 300
Query: 301 SDSQLLGTWDNLKAAGLEDKIELLKISVIELPLPSESVDIIISDIPFGKKFKLGKDIKSI 360
SDSQLLGTWDNLKAAGLEDKIELLKISVIELPLPSESVDIIISDIPFGKKFKLGKDIKSI
Sbjct: 301 SDSQLLGTWDNLKAAGLEDKIELLKISVIELPLPSESVDIIISDIPFGKKFKLGKDIKSI 360
Query: 361 LQEMERVLHVGGTIVLLLSEDHHRRLTDCKESNIPFNSKDSHTDEPGIKKCLNPEEKTGA 420
LQEMERVLHVGGTIVLLLSEDHHRRLTDCKESNIPFNSKDSHTDEPGIKKCLNPEEKTGA
Sbjct: 361 LQEMERVLHVGGTIVLLLSEDHHRRLTDCKESNIPFNSKDSHTDEPGIKKCLNPEEKTGA 420
Query: 421 FKTASTSFEASNHKFLDRMSPFGSLVPVECYKVSLGKTDAFICKYKKSHSSGL 473
FKTASTSFEASNHKFLDRMSPFGSLVPVECYKVSLGKTDAFICKYKKSHSSGL
Sbjct: 421 FKTASTSFEASNHKFLDRMSPFGSLVPVECYKVSLGKTDAFICKYKKSHSSGL 473
>gi|166197708 THUMP domain containing 3 [Homo sapiens]
Length = 507
Score = 133 bits (335), Expect = 3e-31
Identities = 109/402 (27%), Positives = 193/402 (48%), Gaps = 32/402 (7%)
Query: 3 EVRARLAAT-QVEYISGKVFFT-TCSDLNMLKKLKSAERLFLLIKKQFPLIISSVSKGKI 60
EVR +L ++ ++ GK++F + L + L+S + LF++++ +F +K ++
Sbjct: 55 EVREKLGSSCKISRDRGKIYFVISVESLAQVHCLRSVDNLFVVVQ-EFQDYQFKQTKEEV 113
Query: 61 FNEMQRLINEDPGSWLNAISIWKNLLELDAKKEKLSQRDDNQLKRKVGENEIIAKKLKIE 120
+ + L + P W N + +WK KK K + + N K K+ + ++KI+
Sbjct: 114 LKDFEDLAGKLP--WSNPLKVWKINASFKKKKAKRKKINQNSSKEKINNGQ----EVKID 167
Query: 121 QMQKIEENRDCQLEKQI----KEETLEQRDFTTKSEKFQEEEFQNDIEKAIDTHNQNDLT 176
Q +E L+ I + +++ T + + + D +T Q L
Sbjct: 168 QRNVKKEFTSHALDSHILDYYENPAIKEDVSTLIGDDLASCKDETDESSKEETEPQV-LK 226
Query: 177 FRVSCRCSGTIGKAFTAQEVGKVIGIAIMKHFGWKADLRNPQLEIFIHLNDIYSVVGIPV 236
FRV+C +G FT+ E + G A+ +F WKAD+ N +E+ ++++D +VGI +
Sbjct: 227 FRVTCNRAGE-KHCFTSNEAARDFGGAVQDYFKWKADMTNFDVEVLLNIHDNEVIVGIAL 285
Query: 237 FRVSLASR--AYIKTAGLRSTIAWAMASLADIKAGAFVLDPMCGLGTILLEAAKEWPDVY 294
SL R + LRST+A+ M L D ++DPMCG G I +E A EW D +
Sbjct: 286 TEESLHRRNITHFGPTTLRSTLAYGMLRLCDPLPYDIIVDPMCGTGAIPIEGATEWSDCF 345
Query: 295 YVGADVSDSQLLGTWDNL-----KAAGLEDK------IELLKISVIELPLPSESVDIIIS 343
++ D + + +N+ K+ E K I+ ++ + LPL + SVDII++
Sbjct: 346 HIAGDNNPLAVNRAANNIASLLTKSQIKEGKPSWGLPIDAVQWDICNLPLRTGSVDIIVT 405
Query: 344 DIPFGKKFKLGKD----IKSILQEMERVLHVGGTIVLLLSED 381
D+PFGK+ K + L+EM RV +LL++D
Sbjct: 406 DLPFGKRMGSKKRNWNLYPACLREMSRVCTPTTGRAVLLTQD 447
>gi|166197706 THUMP domain containing 3 [Homo sapiens]
Length = 507
Score = 133 bits (335), Expect = 3e-31
Identities = 109/402 (27%), Positives = 193/402 (48%), Gaps = 32/402 (7%)
Query: 3 EVRARLAAT-QVEYISGKVFFT-TCSDLNMLKKLKSAERLFLLIKKQFPLIISSVSKGKI 60
EVR +L ++ ++ GK++F + L + L+S + LF++++ +F +K ++
Sbjct: 55 EVREKLGSSCKISRDRGKIYFVISVESLAQVHCLRSVDNLFVVVQ-EFQDYQFKQTKEEV 113
Query: 61 FNEMQRLINEDPGSWLNAISIWKNLLELDAKKEKLSQRDDNQLKRKVGENEIIAKKLKIE 120
+ + L + P W N + +WK KK K + + N K K+ + ++KI+
Sbjct: 114 LKDFEDLAGKLP--WSNPLKVWKINASFKKKKAKRKKINQNSSKEKINNGQ----EVKID 167
Query: 121 QMQKIEENRDCQLEKQI----KEETLEQRDFTTKSEKFQEEEFQNDIEKAIDTHNQNDLT 176
Q +E L+ I + +++ T + + + D +T Q L
Sbjct: 168 QRNVKKEFTSHALDSHILDYYENPAIKEDVSTLIGDDLASCKDETDESSKEETEPQV-LK 226
Query: 177 FRVSCRCSGTIGKAFTAQEVGKVIGIAIMKHFGWKADLRNPQLEIFIHLNDIYSVVGIPV 236
FRV+C +G FT+ E + G A+ +F WKAD+ N +E+ ++++D +VGI +
Sbjct: 227 FRVTCNRAGE-KHCFTSNEAARDFGGAVQDYFKWKADMTNFDVEVLLNIHDNEVIVGIAL 285
Query: 237 FRVSLASR--AYIKTAGLRSTIAWAMASLADIKAGAFVLDPMCGLGTILLEAAKEWPDVY 294
SL R + LRST+A+ M L D ++DPMCG G I +E A EW D +
Sbjct: 286 TEESLHRRNITHFGPTTLRSTLAYGMLRLCDPLPYDIIVDPMCGTGAIPIEGATEWSDCF 345
Query: 295 YVGADVSDSQLLGTWDNL-----KAAGLEDK------IELLKISVIELPLPSESVDIIIS 343
++ D + + +N+ K+ E K I+ ++ + LPL + SVDII++
Sbjct: 346 HIAGDNNPLAVNRAANNIASLLTKSQIKEGKPSWGLPIDAVQWDICNLPLRTGSVDIIVT 405
Query: 344 DIPFGKKFKLGKD----IKSILQEMERVLHVGGTIVLLLSED 381
D+PFGK+ K + L+EM RV +LL++D
Sbjct: 406 DLPFGKRMGSKKRNWNLYPACLREMSRVCTPTTGRAVLLTQD 447
>gi|223556010 protein arginine methyltransferase 3 isoform 3 [Homo
sapiens]
Length = 454
Score = 42.7 bits (99), Expect = 7e-04
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Query: 272 VLDPMCGLGTILLEAAKEWPDVYYVGADVSDSQLLGTWDNLKAAGLEDKIELLKISVIEL 331
VLD CG G + + AAK +G D S+ L D ++ LED I L+K + E+
Sbjct: 182 VLDVGCGTGILSMFAAKAGAKKV-LGVDQSEI-LYQAMDIIRLNKLEDTITLIKGKIEEV 239
Query: 332 PLPSESVDIIISDIPFGKKFKLGKDIKSILQEMERVLHVGGTI 374
LP E VD+IIS+ G + S+L + L GG++
Sbjct: 240 HLPVEKVDVIISEW-MGYFLLFESMLDSVLYAKNKYLAKGGSV 281
>gi|223556008 protein arginine methyltransferase 3 isoform 2 [Homo
sapiens]
Length = 469
Score = 42.7 bits (99), Expect = 7e-04
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Query: 272 VLDPMCGLGTILLEAAKEWPDVYYVGADVSDSQLLGTWDNLKAAGLEDKIELLKISVIEL 331
VLD CG G + + AAK +G D S+ L D ++ LED I L+K + E+
Sbjct: 197 VLDVGCGTGILSMFAAKAGAKKV-LGVDQSEI-LYQAMDIIRLNKLEDTITLIKGKIEEV 254
Query: 332 PLPSESVDIIISDIPFGKKFKLGKDIKSILQEMERVLHVGGTI 374
LP E VD+IIS+ G + S+L + L GG++
Sbjct: 255 HLPVEKVDVIISEW-MGYFLLFESMLDSVLYAKNKYLAKGGSV 296
>gi|44771198 protein arginine methyltransferase 3 isoform 1 [Homo
sapiens]
Length = 531
Score = 42.7 bits (99), Expect = 7e-04
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Query: 272 VLDPMCGLGTILLEAAKEWPDVYYVGADVSDSQLLGTWDNLKAAGLEDKIELLKISVIEL 331
VLD CG G + + AAK +G D S+ L D ++ LED I L+K + E+
Sbjct: 259 VLDVGCGTGILSMFAAKAGAKKV-LGVDQSEI-LYQAMDIIRLNKLEDTITLIKGKIEEV 316
Query: 332 PLPSESVDIIISDIPFGKKFKLGKDIKSILQEMERVLHVGGTI 374
LP E VD+IIS+ G + S+L + L GG++
Sbjct: 317 HLPVEKVDVIISEW-MGYFLLFESMLDSVLYAKNKYLAKGGSV 358
>gi|187761324 shootin1 isoform a [Homo sapiens]
Length = 631
Score = 38.5 bits (88), Expect = 0.013
Identities = 33/140 (23%), Positives = 73/140 (52%), Gaps = 11/140 (7%)
Query: 50 LIISSVSKGKIFNEMQRLINEDPGSWLNAISIWKNLLELDAKKEKLSQRDDNQLKRKVGE 109
L + + ++ E+++ + + S+ + I +N L+ + S D QL + + E
Sbjct: 209 LAVEEYEEMQVNLELEKDLRKKAESFAQEMFIEQNKLKRQSHLLLQSSIPDQQLLKALDE 268
Query: 110 NEIIAKKLKIEQMQKIEENRDCQLEKQIKEETL--------EQRDFTTKSEKFQEEEFQN 161
N + ++L+ E++Q ++ ++ LE+Q++ ETL +Q + + +K E ++QN
Sbjct: 269 NAKLTQQLEEERIQHQQKVKE--LEEQLENETLHKEIHNLKQQLELLEEDKKELELKYQN 326
Query: 162 DIEKAID-THNQNDLTFRVS 180
EKA + H+ ++L RV+
Sbjct: 327 SEEKARNLKHSVDELQKRVN 346
>gi|50511340 shootin1 isoform b [Homo sapiens]
Length = 456
Score = 38.5 bits (88), Expect = 0.013
Identities = 33/140 (23%), Positives = 73/140 (52%), Gaps = 11/140 (7%)
Query: 50 LIISSVSKGKIFNEMQRLINEDPGSWLNAISIWKNLLELDAKKEKLSQRDDNQLKRKVGE 109
L + + ++ E+++ + + S+ + I +N L+ + S D QL + + E
Sbjct: 209 LAVEEYEEMQVNLELEKDLRKKAESFAQEMFIEQNKLKRQSHLLLQSSIPDQQLLKALDE 268
Query: 110 NEIIAKKLKIEQMQKIEENRDCQLEKQIKEETL--------EQRDFTTKSEKFQEEEFQN 161
N + ++L+ E++Q ++ ++ LE+Q++ ETL +Q + + +K E ++QN
Sbjct: 269 NAKLTQQLEEERIQHQQKVKE--LEEQLENETLHKEIHNLKQQLELLEEDKKELELKYQN 326
Query: 162 DIEKAID-THNQNDLTFRVS 180
EKA + H+ ++L RV+
Sbjct: 327 SEEKARNLKHSVDELQKRVN 346
>gi|239756241 PREDICTED: golgi autoantigen, golgin subfamily a-like
[Homo sapiens]
Length = 899
Score = 38.1 bits (87), Expect = 0.017
Identities = 28/112 (25%), Positives = 57/112 (50%), Gaps = 6/112 (5%)
Query: 59 KIFNEMQRLINEDPGSWLNAISIWKNLLELDAKKEKLSQRDDNQLKRKVGENEI-IAKKL 117
K+ + +++ ++ W +W+ L +KEKL + + Q + K+ E E I ++
Sbjct: 632 KMQEQEEKMWEQEEKMWEQEEKMWEQQ-RLPEQKEKLWEHEKMQEQEKMQEQEEKIWEQE 690
Query: 118 KIEQMQKIEENRDCQLEKQIKEETLEQRDFTTKSE----KFQEEEFQNDIEK 165
K+E+ + +E + EK +EE++ +R+ + E + QEE+ Q EK
Sbjct: 691 KMEKKTQEQEKKTWDQEKMREEESMREREKKMREEEEMMREQEEKMQEQEEK 742
Score = 33.9 bits (76), Expect = 0.33
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 91 KKEKLSQRDDNQLKRKVGENEIIAKKLKIEQMQKIEENRDCQLEKQIKEETL-EQRDFTT 149
++EK+ + + + + K E + + E+MQK EEN Q EK+ +++ L EQ++
Sbjct: 442 QEEKMQEEERIREREKKMREEEETMREQEEKMQKQEENMWEQEEKEWQQQRLPEQKEKLW 501
Query: 150 KSEKFQEEE 158
+ EK QE+E
Sbjct: 502 EQEKMQEQE 510
Score = 32.7 bits (73), Expect = 0.73
Identities = 19/81 (23%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 81 IWKNLLELDAKKEKLSQRDDNQLKRKVGENEIIAKKLKIEQMQKIEENRDCQLEKQIKE- 139
+W+ EL +++K+ ++++ +++ E K + E+ +E R + EK+++E
Sbjct: 274 MWRQEEELREQEKKIRKQEEKMWRQEERLREQEGKMREQEEKMWRQEKRLREQEKELREQ 333
Query: 140 --ETLEQRDFTTKSEKFQEEE 158
E EQ++ + E+ QE+E
Sbjct: 334 EKELREQKELREQEEQMQEQE 354
Score = 30.4 bits (67), Expect = 3.6
Identities = 24/123 (19%), Positives = 57/123 (46%), Gaps = 17/123 (13%)
Query: 59 KIFNEMQRLINEDPGSWLNAISIWKNLLELDAKKEKLSQRD------DNQLKRKVGEN-- 110
K++ + +++ ++ W +W+ ++ +++K+ ++ D +L+ K
Sbjct: 356 KMWEQEEKMREQEEKMWRQEERLWEQEKQMREQEQKMRDQEERMWEQDERLREKEERMRE 415
Query: 111 -----EIIAKKLKIEQMQKIEENRDCQLEKQIKEETLEQRDFTTKSE----KFQEEEFQN 161
E + K + ++MQ+ E+ Q EK +EE + +R+ + E + QEE+ Q
Sbjct: 416 QEKMWEQVEKMREEKKMQEQEKKTRDQEEKMQEEERIREREKKMREEEETMREQEEKMQK 475
Query: 162 DIE 164
E
Sbjct: 476 QEE 478
Score = 30.0 bits (66), Expect = 4.8
Identities = 22/85 (25%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 81 IWKNLLELDAKKEKLSQRDDNQLKRKVGENEIIAKKLKIEQMQKIEENRDCQLEKQIKEE 140
+W+ ++ +++K+ +++ ++++K E E KK ++ + EE R + EK+++EE
Sbjct: 546 MWEQEEKMRDQEQKMWDQEE-RMEKKTQEQE---KKTWDQEEKMREEERMREREKKMREE 601
Query: 141 TLEQRDFTTKSEKFQEEEFQNDIEK 165
R+ K ++ QEE+ Q EK
Sbjct: 602 EEMMREQEEKMQE-QEEKMQEQEEK 625
>gi|154354979 myosin X [Homo sapiens]
Length = 2058
Score = 38.1 bits (87), Expect = 0.017
Identities = 20/74 (27%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 92 KEKLSQRDDNQLKRKVGENEIIAKKLKIEQMQKIEENRDCQLEKQIKEETLEQRDFTTKS 151
++ L+++ + + K+K E E KK + E+ ++ E R+ +L Q +EET +Q++
Sbjct: 809 RQLLAEKREQEEKKKQEEEE--KKKREEEERERERERREAELRAQQEEETRKQQELEALQ 866
Query: 152 EKFQEEEFQNDIEK 165
+ +E E ++EK
Sbjct: 867 KSQKEAELTRELEK 880
Score = 32.7 bits (73), Expect = 0.73
Identities = 18/75 (24%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 102 QLKRKVGENEIIAKKLKIEQMQKIEENRDCQLEKQIKEETLEQRDFTTKSEKFQEEEFQN 161
Q+ R+V +++A+K + E+ +K EE + E++ +E E+R+ ++++ +E Q
Sbjct: 802 QIARRV-YRQLLAEKREQEEKKKQEEEEKKKREEEERERERERREAELRAQQEEETRKQQ 860
Query: 162 DIEKAIDTHNQNDLT 176
++E + + +LT
Sbjct: 861 ELEALQKSQKEAELT 875
>gi|223634475 golgi autoantigen, golgin subfamily a, 6D [Homo
sapiens]
Length = 693
Score = 37.4 bits (85), Expect = 0.030
Identities = 25/104 (24%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 59 KIFNEMQRLINEDPGSWLNAISIWKNLLELDAKKEKLSQRDDNQLKRKVGENEIIAKKLK 118
++ E +RL ++ W +WK L ++E+L+ +++L +++ E + + L
Sbjct: 394 RLRKEEERLQKQEKRLWDQEERLWKKEERLQKQEERLALSQNHKLDKQLAEPQCSFEDLN 453
Query: 119 IEQMQKIEENRDCQLEKQIKE--ETLEQRDFTTKSEKFQEEEFQ 160
E+ + QLE+Q+KE E L++ S++ Q+ E Q
Sbjct: 454 NEKKSAL------QLEQQVKELQEKLDEEHLEAASQRNQQLETQ 491
>gi|51472437 PREDICTED: golgi autoantigen, golgin subfamily a, 6C
isoform 1 [Homo sapiens]
Length = 693
Score = 37.4 bits (85), Expect = 0.030
Identities = 25/104 (24%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 59 KIFNEMQRLINEDPGSWLNAISIWKNLLELDAKKEKLSQRDDNQLKRKVGENEIIAKKLK 118
++ E +RL ++ W +WK L ++E+L+ +++L +++ E + + L
Sbjct: 394 RLRKEEERLQKQEKRLWDQEERLWKKEERLQKQEERLALSQNHKLDKQLAEPQCSFEDLN 453
Query: 119 IEQMQKIEENRDCQLEKQIKE--ETLEQRDFTTKSEKFQEEEFQ 160
E+ + QLE+Q+KE E L++ S++ Q+ E Q
Sbjct: 454 NEKKSAL------QLEQQVKELQEKLDEEHLEAASQRNQQLETQ 491
>gi|94538359 golgi autoantigen, golgin subfamily a, 6B [Homo
sapiens]
Length = 693
Score = 37.0 bits (84), Expect = 0.039
Identities = 25/104 (24%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 59 KIFNEMQRLINEDPGSWLNAISIWKNLLELDAKKEKLSQRDDNQLKRKVGENEIIAKKLK 118
++ E +RL ++ W +WK L ++E+L+ +++L +++ E + + L
Sbjct: 394 RLRKEEERLQKQEKRLWDQEERLWKKEERLQKQEERLALSQNHKLDKQLAEPQCSFEDLN 453
Query: 119 IEQMQKIEENRDCQLEKQIKE--ETLEQRDFTTKSEKFQEEEFQ 160
E+ + QLE+Q+KE E L++ S++ Q+ E Q
Sbjct: 454 NEKKSAL------QLEQQVKELQEKLDEEHLEAASQQNQQLETQ 491
>gi|34147403 intraflagellar transport 81-like isoform 2 [Homo
sapiens]
Length = 431
Score = 36.2 bits (82), Expect = 0.066
Identities = 36/163 (22%), Positives = 78/163 (47%), Gaps = 15/163 (9%)
Query: 29 NMLKKLKSAERLFL-LIKKQFPLIISSVSKGKIFNEMQRLINEDPGSWLNAISIWKNLLE 87
+++K+L+ + L ++ ++FP + + K K + +Q++++E +LLE
Sbjct: 261 SLMKRLEEEIKFNLYMVTEKFPKELEN--KKKELHFLQKVVSEPAMGH-------SDLLE 311
Query: 88 LDAKKEKLSQRDDNQLKRKVGENEIIAKKLKI--EQMQKIEENRDCQLEK-QIKEETLEQ 144
L++K +++ + +++K+ NE I KL + +Q I ++ + E+ Q +E L
Sbjct: 312 LESKINEINTEINQLIEKKMMRNEPIEGKLSLYRQQASIISRKKEAKAEELQEAKEKLAS 371
Query: 145 RDFTTKSEKFQEEEFQNDIEKAIDTHNQNDLTFRVSCRCSGTI 187
+ ++ Q EF D + + + DLT C G I
Sbjct: 372 LEREASVKRNQTREF--DGTEVLKGDERQDLTLSPRLECGGVI 412
>gi|146133848 golgi autoantigen, golgin subfamily a, 6 [Homo
sapiens]
Length = 693
Score = 36.2 bits (82), Expect = 0.066
Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 8/104 (7%)
Query: 59 KIFNEMQRLINEDPGSWLNAISIWKNLLELDAKKEKLSQRDDNQLKRKVGENEIIAKKLK 118
++ E +RL ++ W +WK L ++E+L+ +++L +++ E + + L
Sbjct: 394 RLRKEEERLQKQEKRLWDQEERLWKKEERLQKQEERLALSQNHKLDKQLAEPQCSFEDLN 453
Query: 119 IEQMQKIEENRDCQLEKQIKE--ETLEQRDFTTKSEKFQEEEFQ 160
E+ + QLE+Q+KE E L++ S + Q+ E Q
Sbjct: 454 NEKKSAL------QLEQQVKELQEKLDEEHLEAASHQNQQLETQ 491
>gi|94420683 tRNA methyltransferase 11 [Homo sapiens]
Length = 463
Score = 35.8 bits (81), Expect = 0.087
Identities = 46/194 (23%), Positives = 77/194 (39%), Gaps = 29/194 (14%)
Query: 173 NDLTFRVSCRCSGTIGKAFTAQEVGKVIGIAIMKHFGWKADLRNPQLEIFIHLND----- 227
+D T+++ T K T +E K I F K +L+ PQ +F L D
Sbjct: 104 SDSTYKIKIH---TFNKTLTQEEKIKRIDALEFLPFEGKVNLKKPQ-HVFSVLEDYGLDP 159
Query: 228 ---------IYSVVGIP------VFRVSLASRAYIKTAGLRSTIAWAMASLADIKAGAFV 272
IY I + S+ R +I + + +++ MA+ +K V
Sbjct: 160 NCIPENPHNIYFGRWIADGQRELIESYSVKKRHFIGNTSMDAGLSFIMANHGKVKENDIV 219
Query: 273 LDPMCGLGTILLEAAKEWPDVYYVGADVSDSQLLG--TWDNLKAAGLEDKIELLKISVIE 330
DP G G +L+ A VY D + LG T N K G ++ I + ++ +
Sbjct: 220 FDPFVGTGGLLIACAHFGAYVYGTDIDYNTVHGLGKATRKNQKWRGPDENI---RANLRQ 276
Query: 331 LPLPSESVDIIISD 344
L +D+++SD
Sbjct: 277 YGLEKYYLDVLVSD 290
>gi|34304370 dystrobrevin binding protein 1 isoform c [Homo sapiens]
Length = 270
Score = 35.4 bits (80), Expect = 0.11
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 12/83 (14%)
Query: 87 ELDAKKEKLSQRDDNQLKRKVGENEIIAKKLKIEQMQKIEENRDCQLEKQIKEETLEQRD 146
EL+ K SQ+ +N K K E E +L E QK+ E Q + ++KE
Sbjct: 62 ELERCKHMQSQQLENYKKNKRKELETFKAELDAEHAQKVLEMEHTQ-QMKLKER------ 114
Query: 147 FTTKSEKFQEEEFQNDIEKAIDT 169
+KF EE FQ D+E+ + T
Sbjct: 115 -----QKFFEEAFQQDMEQYLST 132
>gi|34304368 dystrobrevin binding protein 1 isoform b [Homo sapiens]
Length = 303
Score = 35.4 bits (80), Expect = 0.11
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 12/83 (14%)
Query: 87 ELDAKKEKLSQRDDNQLKRKVGENEIIAKKLKIEQMQKIEENRDCQLEKQIKEETLEQRD 146
EL+ K SQ+ +N K K E E +L E QK+ E Q + ++KE
Sbjct: 143 ELERCKHMQSQQLENYKKNKRKELETFKAELDAEHAQKVLEMEHTQ-QMKLKER------ 195
Query: 147 FTTKSEKFQEEEFQNDIEKAIDT 169
+KF EE FQ D+E+ + T
Sbjct: 196 -----QKFFEEAFQQDMEQYLST 213
>gi|19549327 dystrobrevin binding protein 1 isoform a [Homo sapiens]
Length = 351
Score = 35.4 bits (80), Expect = 0.11
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 12/83 (14%)
Query: 87 ELDAKKEKLSQRDDNQLKRKVGENEIIAKKLKIEQMQKIEENRDCQLEKQIKEETLEQRD 146
EL+ K SQ+ +N K K E E +L E QK+ E Q + ++KE
Sbjct: 143 ELERCKHMQSQQLENYKKNKRKELETFKAELDAEHAQKVLEMEHTQ-QMKLKER------ 195
Query: 147 FTTKSEKFQEEEFQNDIEKAIDT 169
+KF EE FQ D+E+ + T
Sbjct: 196 -----QKFFEEAFQQDMEQYLST 213
>gi|41152097 DNA segment on chromosome X and Y (unique) 155
expressed sequence isoform 1 [Homo sapiens]
Length = 695
Score = 35.4 bits (80), Expect = 0.11
Identities = 23/100 (23%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Query: 68 INEDPGSWLNAISIWKNLLELDAKKEKLSQRDDNQLKRKVGENEIIAKKLKIEQMQKIEE 127
++ D L+ SI K LE +E QR++ + + K E A++ K ++++++E
Sbjct: 255 VSFDSTKHLSDASIKKRQLERQKLQELEQQREEQKRREKEAEERQRAEERKQKELEELER 314
Query: 128 NRDCQLEKQIKEETLEQRDFTTKSEKFQEEEFQNDIEKAI 167
R + E+++++ +QRD + + + E+ Q + +K +
Sbjct: 315 ER--KREEKLRKREQKQRDRELRRNQKKLEKLQAEEQKQL 352
>gi|41322923 plectin 1 isoform 11 [Homo sapiens]
Length = 4547
Score = 35.4 bits (80), Expect = 0.11
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 20/89 (22%)
Query: 85 LLELDAKKEKLSQRDDNQLKRKVGENEIIAKKLKIEQMQKIEENRDCQLEKQIKEETLEQ 144
+ EL+ +KEKL Q E +LK E+MQ +++ + Q + +++ L +
Sbjct: 2452 IAELEREKEKLQQ-------------EAKLLQLKSEEMQTVQQEQLLQETQALQQSFLSE 2498
Query: 145 RDFTTKSEKFQEEE-------FQNDIEKA 166
+D + E+F E+E FQ+++ KA
Sbjct: 2499 KDSLLQRERFIEQEKAKLEQLFQDEVAKA 2527
>gi|41322914 plectin 1 isoform 10 [Homo sapiens]
Length = 4551
Score = 35.4 bits (80), Expect = 0.11
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 20/89 (22%)
Query: 85 LLELDAKKEKLSQRDDNQLKRKVGENEIIAKKLKIEQMQKIEENRDCQLEKQIKEETLEQ 144
+ EL+ +KEKL Q E +LK E+MQ +++ + Q + +++ L +
Sbjct: 2456 IAELEREKEKLQQ-------------EAKLLQLKSEEMQTVQQEQLLQETQALQQSFLSE 2502
Query: 145 RDFTTKSEKFQEEE-------FQNDIEKA 166
+D + E+F E+E FQ+++ KA
Sbjct: 2503 KDSLLQRERFIEQEKAKLEQLFQDEVAKA 2531
>gi|41322919 plectin 1 isoform 8 [Homo sapiens]
Length = 4547
Score = 35.4 bits (80), Expect = 0.11
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 20/89 (22%)
Query: 85 LLELDAKKEKLSQRDDNQLKRKVGENEIIAKKLKIEQMQKIEENRDCQLEKQIKEETLEQ 144
+ EL+ +KEKL Q E +LK E+MQ +++ + Q + +++ L +
Sbjct: 2452 IAELEREKEKLQQ-------------EAKLLQLKSEEMQTVQQEQLLQETQALQQSFLSE 2498
Query: 145 RDFTTKSEKFQEEE-------FQNDIEKA 166
+D + E+F E+E FQ+++ KA
Sbjct: 2499 KDSLLQRERFIEQEKAKLEQLFQDEVAKA 2527
>gi|41322910 plectin 1 isoform 7 [Homo sapiens]
Length = 4515
Score = 35.4 bits (80), Expect = 0.11
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 20/89 (22%)
Query: 85 LLELDAKKEKLSQRDDNQLKRKVGENEIIAKKLKIEQMQKIEENRDCQLEKQIKEETLEQ 144
+ EL+ +KEKL Q E +LK E+MQ +++ + Q + +++ L +
Sbjct: 2420 IAELEREKEKLQQ-------------EAKLLQLKSEEMQTVQQEQLLQETQALQQSFLSE 2466
Query: 145 RDFTTKSEKFQEEE-------FQNDIEKA 166
+D + E+F E+E FQ+++ KA
Sbjct: 2467 KDSLLQRERFIEQEKAKLEQLFQDEVAKA 2495
>gi|41322916 plectin 1 isoform 6 [Homo sapiens]
Length = 4684
Score = 35.4 bits (80), Expect = 0.11
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 20/89 (22%)
Query: 85 LLELDAKKEKLSQRDDNQLKRKVGENEIIAKKLKIEQMQKIEENRDCQLEKQIKEETLEQ 144
+ EL+ +KEKL Q E +LK E+MQ +++ + Q + +++ L +
Sbjct: 2589 IAELEREKEKLQQ-------------EAKLLQLKSEEMQTVQQEQLLQETQALQQSFLSE 2635
Query: 145 RDFTTKSEKFQEEE-------FQNDIEKA 166
+D + E+F E+E FQ+++ KA
Sbjct: 2636 KDSLLQRERFIEQEKAKLEQLFQDEVAKA 2664
>gi|41322908 plectin 1 isoform 3 [Homo sapiens]
Length = 4525
Score = 35.4 bits (80), Expect = 0.11
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 20/89 (22%)
Query: 85 LLELDAKKEKLSQRDDNQLKRKVGENEIIAKKLKIEQMQKIEENRDCQLEKQIKEETLEQ 144
+ EL+ +KEKL Q E +LK E+MQ +++ + Q + +++ L +
Sbjct: 2430 IAELEREKEKLQQ-------------EAKLLQLKSEEMQTVQQEQLLQETQALQQSFLSE 2476
Query: 145 RDFTTKSEKFQEEE-------FQNDIEKA 166
+D + E+F E+E FQ+++ KA
Sbjct: 2477 KDSLLQRERFIEQEKAKLEQLFQDEVAKA 2505
>gi|41322912 plectin 1 isoform 2 [Homo sapiens]
Length = 4533
Score = 35.4 bits (80), Expect = 0.11
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 20/89 (22%)
Query: 85 LLELDAKKEKLSQRDDNQLKRKVGENEIIAKKLKIEQMQKIEENRDCQLEKQIKEETLEQ 144
+ EL+ +KEKL Q E +LK E+MQ +++ + Q + +++ L +
Sbjct: 2438 IAELEREKEKLQQ-------------EAKLLQLKSEEMQTVQQEQLLQETQALQQSFLSE 2484
Query: 145 RDFTTKSEKFQEEE-------FQNDIEKA 166
+D + E+F E+E FQ+++ KA
Sbjct: 2485 KDSLLQRERFIEQEKAKLEQLFQDEVAKA 2513
>gi|47607492 plectin 1 isoform 1 [Homo sapiens]
Length = 4574
Score = 35.4 bits (80), Expect = 0.11
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 20/89 (22%)
Query: 85 LLELDAKKEKLSQRDDNQLKRKVGENEIIAKKLKIEQMQKIEENRDCQLEKQIKEETLEQ 144
+ EL+ +KEKL Q E +LK E+MQ +++ + Q + +++ L +
Sbjct: 2479 IAELEREKEKLQQ-------------EAKLLQLKSEEMQTVQQEQLLQETQALQQSFLSE 2525
Query: 145 RDFTTKSEKFQEEE-------FQNDIEKA 166
+D + E+F E+E FQ+++ KA
Sbjct: 2526 KDSLLQRERFIEQEKAKLEQLFQDEVAKA 2554
>gi|190341068 forkhead-associated (FHA) phosphopeptide binding
domain 1 [Homo sapiens]
Length = 1412
Score = 35.4 bits (80), Expect = 0.11
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 92 KEKLSQRDDNQLKRKVGENEIIAKKLKIEQMQKIEENRDCQLEKQIKEETLEQRDFTTKS 151
KE+L Q D ++ R+ E E+ K +I+ M+K + +L K E+++ R KS
Sbjct: 395 KEELKQEDAHRELREAQEKELKLCKTQIQDMEKEMKKLRAELRKSCTEQSVISRTLREKS 454
Query: 152 EKFQEEEFQNDIEKAI 167
+ EE+ Q D + +
Sbjct: 455 K--VEEKLQEDSRRKL 468
>gi|88759339 aster-associated protein [Homo sapiens]
Length = 647
Score = 35.4 bits (80), Expect = 0.11
Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 9/122 (7%)
Query: 59 KIFNEMQRLINEDPGSWLNAISIWKNLLELDAKKEKLSQRDDNQLKRKVGENEIIAKKLK 118
+I NE ++ + L + WK + E +AKK +R + + K+K E K
Sbjct: 455 RIQNEQKKAAKREEA--LASFEAWKAMKEKEAKKIAAKKRLEEKNKKKTEEENAARKGEA 512
Query: 119 IEQMQKIEENRDCQLEKQIKEETLEQRDFTTKSEKFQEE---EFQNDIEKAIDTHNQNDL 175
++ +K +E + + +KE+ ++R++ ++ +EE E + D A++ N+
Sbjct: 513 LQAFEKWKEKK----MEYLKEKNRKEREYERAKKQKEEETVAEKKKDNLTAVEKWNEKKE 568
Query: 176 TF 177
F
Sbjct: 569 AF 570
Score = 33.1 bits (74), Expect = 0.56
Identities = 24/106 (22%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 73 GSWLNAISIWKNLLELDAKKEKLSQRDDNQLKRKVGENEIIAKKLK--IEQMQKIEENRD 130
G L A WK +++ KEK + + + +K E E +A+K K + ++K E ++
Sbjct: 510 GEALQAFEKWKEK-KMEYLKEKNRKEREYERAKKQKEEETVAEKKKDNLTAVEKWNEKKE 568
Query: 131 CQLEKQIKEETLEQR--DFTTKSEKFQEEEFQNDIEKAIDTHNQND 174
+++ KE+ E+R + +K ++++ N+ EK ++ + +
Sbjct: 569 AFFKQKEKEKINEKRKEELKRAEKKDKDKQAINEYEKWLENKEKQE 614
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,162,680
Number of Sequences: 37866
Number of extensions: 683209
Number of successful extensions: 3855
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 221
Number of HSP's that attempted gapping in prelim test: 3203
Number of HSP's gapped (non-prelim): 819
length of query: 473
length of database: 18,247,518
effective HSP length: 106
effective length of query: 367
effective length of database: 14,233,722
effective search space: 5223775974
effective search space used: 5223775974
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.