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Search of human proteins with 13376874
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13376874 lymphocyte antigen 6 complex G6C [Homo sapiens]
(125 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13376874 lymphocyte antigen 6 complex G6C [Homo sapiens] 272 5e-74
gi|221554530 prostate and testis expressed 4 [Homo sapiens] 42 2e-04
gi|5031995 prostate stem cell antigen preproprotein [Homo sapiens] 37 0.004
gi|190886439 hypothetical protein LOC138240 [Homo sapiens] 33 0.056
gi|50845399 lymphocyte antigen 6 complex G5B [Homo sapiens] 32 0.095
gi|53829381 plasminogen activator, urokinase receptor isoform 3 ... 31 0.28
gi|4505865 plasminogen activator, urokinase receptor isoform 1 p... 31 0.28
gi|187829185 CD59 antigen preproprotein [Homo sapiens] 31 0.28
gi|187829183 CD59 antigen preproprotein [Homo sapiens] 31 0.28
gi|10835165 CD59 antigen preproprotein [Homo sapiens] 31 0.28
gi|42716299 CD59 antigen preproprotein [Homo sapiens] 31 0.28
gi|187829070 CD59 antigen preproprotein [Homo sapiens] 31 0.28
gi|42761474 CD59 antigen preproprotein [Homo sapiens] 31 0.28
gi|42716302 CD59 antigen preproprotein [Homo sapiens] 31 0.28
gi|187828910 CD59 antigen preproprotein [Homo sapiens] 31 0.28
gi|57863248 zinc finger, CCHC domain containing 11 isoform a [Ho... 30 0.62
gi|57863246 zinc finger, CCHC domain containing 11 isoform b [Ho... 30 0.62
gi|57863250 zinc finger, CCHC domain containing 11 isoform c [Ho... 30 0.62
gi|222136622 prostate and testis expressed 3 [Homo sapiens] 29 0.81
gi|11321575 lymphocyte antigen 6 complex, locus D [Homo sapiens] 28 1.4
gi|195963412 transforming growth factor, beta receptor I isoform... 28 1.8
gi|4759226 transforming growth factor, beta receptor I isoform 1... 28 2.3
gi|4504033 glycosylphosphatidylinositol anchored molecule like p... 28 2.3
gi|9966907 ARS component B precursor [Homo sapiens] 27 3.1
gi|239753314 PREDICTED: similar to RIKEN cDNA C230030N03 [Homo s... 27 4.0
gi|157502199 CUB and Sushi multiple domains 1 [Homo sapiens] 27 4.0
gi|29294645 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens] 27 4.0
gi|29337283 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens] 27 4.0
gi|29294641 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens] 27 4.0
gi|45387925 LY6/PLAUR domain containing 2 [Homo sapiens] 27 4.0
>gi|13376874 lymphocyte antigen 6 complex G6C [Homo sapiens]
Length = 125
Score = 272 bits (695), Expect = 5e-74
Identities = 125/125 (100%), Positives = 125/125 (100%)
Query: 1 MKALMLLTLSVLLCWVSADIRCHSCYKVPVLGCVDRQSCRLEPGQQCLTTHAYLGKMWVF 60
MKALMLLTLSVLLCWVSADIRCHSCYKVPVLGCVDRQSCRLEPGQQCLTTHAYLGKMWVF
Sbjct: 1 MKALMLLTLSVLLCWVSADIRCHSCYKVPVLGCVDRQSCRLEPGQQCLTTHAYLGKMWVF 60
Query: 61 SNLRCGTPEEPCQEAFNQTNRKLGLTYNTTCCNKDNCNSAGPRPTPALGLVFLTSLAGLG 120
SNLRCGTPEEPCQEAFNQTNRKLGLTYNTTCCNKDNCNSAGPRPTPALGLVFLTSLAGLG
Sbjct: 61 SNLRCGTPEEPCQEAFNQTNRKLGLTYNTTCCNKDNCNSAGPRPTPALGLVFLTSLAGLG 120
Query: 121 LWLLH 125
LWLLH
Sbjct: 121 LWLLH 125
>gi|221554530 prostate and testis expressed 4 [Homo sapiens]
Length = 98
Score = 41.6 bits (96), Expect = 2e-04
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 1 MKALMLLTLSVLLCWVSADIRCHSCYKVPVLGCV-DRQSCRLEPGQQCLTTHAYLGKMWV 59
M L+L++LS L ++C++C C+ R +C + + C TT + G +
Sbjct: 4 MNTLLLVSLSFLYLKEVMGLKCNTCIYTEGWKCMAGRGTCIAKENELCSTTAYFRGDKHM 63
Query: 60 FSNLRCGTPEEPCQEAFNQTNRKLGLTYNTTCCNKDNCN 98
+S C + C+E + + K GL T CC+++ CN
Sbjct: 64 YSTHMC---KYKCRE---EESSKRGLLRVTLCCDRNFCN 96
>gi|5031995 prostate stem cell antigen preproprotein [Homo sapiens]
Length = 123
Score = 37.0 bits (84), Expect = 0.004
Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 18/129 (13%)
Query: 1 MKALML-LTLSVLLCWVSADIRCHSCY-KVPVLGCVDRQSCRLEPGQQCLTTHAY-LGKM 57
MKA++L L ++ L + C+SC +V C+ ++C + G+QC T +G +
Sbjct: 1 MKAVLLALLMAGLALQPGTALLCYSCKAQVSNEDCLQVENCT-QLGEQCWTARIRAVGLL 59
Query: 58 WVFS---NLRCGTPEEPCQEAFNQTNRKLGLTYNTTCCNKDNCNSAGPRP-TPALGLVFL 113
V S +L C + Q+ + +K N TCC+ D CN++G PA ++ L
Sbjct: 60 TVISKGCSLNC---VDDSQDYY--VGKK-----NITCCDTDLCNASGAHALQPAAAILAL 109
Query: 114 TSLAGLGLW 122
GL LW
Sbjct: 110 LPALGLLLW 118
>gi|190886439 hypothetical protein LOC138240 [Homo sapiens]
Length = 161
Score = 33.1 bits (74), Expect = 0.056
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 22 CHSC-YKVPVLGCV-DRQSCRLEPGQQCL-TTHAYLGKMWVFSNLRCGTPEEPC-QEAFN 77
C +C +P GC+ D +C+ EPGQ C H G W +S C C +
Sbjct: 81 CRACNLSLPFHGCLLDLGTCQAEPGQYCKEEVHIQGGIQW-YSVKGCTKNTSECFKSTLV 139
Query: 78 QTNRKLGLTYNTTCCNKDNCN 98
+ +L T CCN CN
Sbjct: 140 KRILQLHELVTTHCCNHSLCN 160
>gi|50845399 lymphocyte antigen 6 complex G5B [Homo sapiens]
Length = 201
Score = 32.3 bits (72), Expect = 0.095
Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 11/108 (10%)
Query: 1 MKALMLLTLSVLLCWVSA-----DIR-CHSCY-KVPVLGCVD-RQSCRLEPGQQCLTTHA 52
MK ML+ + V++ + DIR CH C + P +GC+ + C + C+
Sbjct: 1 MKVHMLVGVLVMVGFTVGKVPVPDIRTCHFCLVEDPSVGCISGSEKCTISSSSLCMVITI 60
Query: 53 YLGKMWVFSNLRCGTP-EEPCQEAFNQTNRKLGLTYNTTCCNKDNCNS 99
Y F CG CQE N + Y CC D CNS
Sbjct: 61 YYDVKVRFIVRGCGQYISYRCQEKRNTYFAEYW--YQAQCCQYDYCNS 106
>gi|53829381 plasminogen activator, urokinase receptor isoform 3
precursor [Homo sapiens]
Length = 290
Score = 30.8 bits (68), Expect = 0.28
Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 26/121 (21%)
Query: 21 RCHSCYKVPVLGCVDRQSCRLE---PGQQCLT-THAYLGKMWVFSNLRCGTPEEPCQ--- 73
+C+SC GC ++ ++ P QCL T + K + C T CQ
Sbjct: 170 QCYSCKGNSTHGCSSEETFLIDCRGPMNQCLVATGTHEPKNQSYMVRGCATASM-CQHAH 228
Query: 74 --EAFNQTNRKLGLTYNTTCCNKDNCN----------SAGPRPTPALGLVFLTSLAGLGL 121
+AF+ + + +CC K CN A P+P PA + +T L L
Sbjct: 229 LGDAFSMNH------IDVSCCTKSGCNHPDLDVQYRSGAAPQPGPAHLSLTITLLMTARL 282
Query: 122 W 122
W
Sbjct: 283 W 283
>gi|4505865 plasminogen activator, urokinase receptor isoform 1
precursor [Homo sapiens]
Length = 335
Score = 30.8 bits (68), Expect = 0.28
Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 26/121 (21%)
Query: 21 RCHSCYKVPVLGCVDRQSCRLE---PGQQCLT-THAYLGKMWVFSNLRCGTPEEPCQ--- 73
+C+SC GC ++ ++ P QCL T + K + C T CQ
Sbjct: 215 QCYSCKGNSTHGCSSEETFLIDCRGPMNQCLVATGTHEPKNQSYMVRGCATASM-CQHAH 273
Query: 74 --EAFNQTNRKLGLTYNTTCCNKDNCN----------SAGPRPTPALGLVFLTSLAGLGL 121
+AF+ + + +CC K CN A P+P PA + +T L L
Sbjct: 274 LGDAFSMNH------IDVSCCTKSGCNHPDLDVQYRSGAAPQPGPAHLSLTITLLMTARL 327
Query: 122 W 122
W
Sbjct: 328 W 328
>gi|187829185 CD59 antigen preproprotein [Homo sapiens]
Length = 128
Score = 30.8 bits (68), Expect = 0.28
Identities = 30/99 (30%), Positives = 39/99 (39%), Gaps = 21/99 (21%)
Query: 6 LLTLSVLLCWVSADIRCHSCYKVPVLGCVDRQSCRLEPGQQCLTTHAYL---GKMWVFSN 62
LL + + C ++C++C P C +C + CL T A L K W F
Sbjct: 12 LLLVLAVFCHSGHSLQCYNCPN-PTADCKTAVNCSSD-FDACLITKAGLQVYNKCWKF-- 67
Query: 63 LRCGTPEEPCQEAFNQTNRKLG---LTYNTTCCNKDNCN 98
E C FN +L LTY CC KD CN
Sbjct: 68 -------EHCN--FNDVTTRLRENELTYY--CCKKDLCN 95
>gi|187829183 CD59 antigen preproprotein [Homo sapiens]
Length = 128
Score = 30.8 bits (68), Expect = 0.28
Identities = 30/99 (30%), Positives = 39/99 (39%), Gaps = 21/99 (21%)
Query: 6 LLTLSVLLCWVSADIRCHSCYKVPVLGCVDRQSCRLEPGQQCLTTHAYL---GKMWVFSN 62
LL + + C ++C++C P C +C + CL T A L K W F
Sbjct: 12 LLLVLAVFCHSGHSLQCYNCPN-PTADCKTAVNCSSD-FDACLITKAGLQVYNKCWKF-- 67
Query: 63 LRCGTPEEPCQEAFNQTNRKLG---LTYNTTCCNKDNCN 98
E C FN +L LTY CC KD CN
Sbjct: 68 -------EHCN--FNDVTTRLRENELTYY--CCKKDLCN 95
>gi|10835165 CD59 antigen preproprotein [Homo sapiens]
Length = 128
Score = 30.8 bits (68), Expect = 0.28
Identities = 30/99 (30%), Positives = 39/99 (39%), Gaps = 21/99 (21%)
Query: 6 LLTLSVLLCWVSADIRCHSCYKVPVLGCVDRQSCRLEPGQQCLTTHAYL---GKMWVFSN 62
LL + + C ++C++C P C +C + CL T A L K W F
Sbjct: 12 LLLVLAVFCHSGHSLQCYNCPN-PTADCKTAVNCSSD-FDACLITKAGLQVYNKCWKF-- 67
Query: 63 LRCGTPEEPCQEAFNQTNRKLG---LTYNTTCCNKDNCN 98
E C FN +L LTY CC KD CN
Sbjct: 68 -------EHCN--FNDVTTRLRENELTYY--CCKKDLCN 95
>gi|42716299 CD59 antigen preproprotein [Homo sapiens]
Length = 128
Score = 30.8 bits (68), Expect = 0.28
Identities = 30/99 (30%), Positives = 39/99 (39%), Gaps = 21/99 (21%)
Query: 6 LLTLSVLLCWVSADIRCHSCYKVPVLGCVDRQSCRLEPGQQCLTTHAYL---GKMWVFSN 62
LL + + C ++C++C P C +C + CL T A L K W F
Sbjct: 12 LLLVLAVFCHSGHSLQCYNCPN-PTADCKTAVNCSSD-FDACLITKAGLQVYNKCWKF-- 67
Query: 63 LRCGTPEEPCQEAFNQTNRKLG---LTYNTTCCNKDNCN 98
E C FN +L LTY CC KD CN
Sbjct: 68 -------EHCN--FNDVTTRLRENELTYY--CCKKDLCN 95
>gi|187829070 CD59 antigen preproprotein [Homo sapiens]
Length = 128
Score = 30.8 bits (68), Expect = 0.28
Identities = 30/99 (30%), Positives = 39/99 (39%), Gaps = 21/99 (21%)
Query: 6 LLTLSVLLCWVSADIRCHSCYKVPVLGCVDRQSCRLEPGQQCLTTHAYL---GKMWVFSN 62
LL + + C ++C++C P C +C + CL T A L K W F
Sbjct: 12 LLLVLAVFCHSGHSLQCYNCPN-PTADCKTAVNCSSD-FDACLITKAGLQVYNKCWKF-- 67
Query: 63 LRCGTPEEPCQEAFNQTNRKLG---LTYNTTCCNKDNCN 98
E C FN +L LTY CC KD CN
Sbjct: 68 -------EHCN--FNDVTTRLRENELTYY--CCKKDLCN 95
>gi|42761474 CD59 antigen preproprotein [Homo sapiens]
Length = 128
Score = 30.8 bits (68), Expect = 0.28
Identities = 30/99 (30%), Positives = 39/99 (39%), Gaps = 21/99 (21%)
Query: 6 LLTLSVLLCWVSADIRCHSCYKVPVLGCVDRQSCRLEPGQQCLTTHAYL---GKMWVFSN 62
LL + + C ++C++C P C +C + CL T A L K W F
Sbjct: 12 LLLVLAVFCHSGHSLQCYNCPN-PTADCKTAVNCSSD-FDACLITKAGLQVYNKCWKF-- 67
Query: 63 LRCGTPEEPCQEAFNQTNRKLG---LTYNTTCCNKDNCN 98
E C FN +L LTY CC KD CN
Sbjct: 68 -------EHCN--FNDVTTRLRENELTYY--CCKKDLCN 95
>gi|42716302 CD59 antigen preproprotein [Homo sapiens]
Length = 128
Score = 30.8 bits (68), Expect = 0.28
Identities = 30/99 (30%), Positives = 39/99 (39%), Gaps = 21/99 (21%)
Query: 6 LLTLSVLLCWVSADIRCHSCYKVPVLGCVDRQSCRLEPGQQCLTTHAYL---GKMWVFSN 62
LL + + C ++C++C P C +C + CL T A L K W F
Sbjct: 12 LLLVLAVFCHSGHSLQCYNCPN-PTADCKTAVNCSSD-FDACLITKAGLQVYNKCWKF-- 67
Query: 63 LRCGTPEEPCQEAFNQTNRKLG---LTYNTTCCNKDNCN 98
E C FN +L LTY CC KD CN
Sbjct: 68 -------EHCN--FNDVTTRLRENELTYY--CCKKDLCN 95
>gi|187828910 CD59 antigen preproprotein [Homo sapiens]
Length = 128
Score = 30.8 bits (68), Expect = 0.28
Identities = 30/99 (30%), Positives = 39/99 (39%), Gaps = 21/99 (21%)
Query: 6 LLTLSVLLCWVSADIRCHSCYKVPVLGCVDRQSCRLEPGQQCLTTHAYL---GKMWVFSN 62
LL + + C ++C++C P C +C + CL T A L K W F
Sbjct: 12 LLLVLAVFCHSGHSLQCYNCPN-PTADCKTAVNCSSD-FDACLITKAGLQVYNKCWKF-- 67
Query: 63 LRCGTPEEPCQEAFNQTNRKLG---LTYNTTCCNKDNCN 98
E C FN +L LTY CC KD CN
Sbjct: 68 -------EHCN--FNDVTTRLRENELTYY--CCKKDLCN 95
>gi|57863248 zinc finger, CCHC domain containing 11 isoform a [Homo
sapiens]
Length = 1645
Score = 29.6 bits (65), Expect = 0.62
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 9/55 (16%)
Query: 1 MKALMLLTLSVLLCWVSADIRCHSCYKVPVLGCVDRQS---CRLEPGQQ--CLTT 50
+K L +L +VL V +D KVPV+ C DR+S CR+ G CLTT
Sbjct: 430 IKVLGILKKNVLYVDVESDFHA----KVPVVVCRDRKSGLLCRVSAGNDMACLTT 480
>gi|57863246 zinc finger, CCHC domain containing 11 isoform b [Homo
sapiens]
Length = 1644
Score = 29.6 bits (65), Expect = 0.62
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 9/55 (16%)
Query: 1 MKALMLLTLSVLLCWVSADIRCHSCYKVPVLGCVDRQS---CRLEPGQQ--CLTT 50
+K L +L +VL V +D KVPV+ C DR+S CR+ G CLTT
Sbjct: 430 IKVLGILKKNVLYVDVESDFHA----KVPVVVCRDRKSGLLCRVSAGNDMACLTT 480
>gi|57863250 zinc finger, CCHC domain containing 11 isoform c [Homo
sapiens]
Length = 1640
Score = 29.6 bits (65), Expect = 0.62
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 9/55 (16%)
Query: 1 MKALMLLTLSVLLCWVSADIRCHSCYKVPVLGCVDRQS---CRLEPGQQ--CLTT 50
+K L +L +VL V +D KVPV+ C DR+S CR+ G CLTT
Sbjct: 430 IKVLGILKKNVLYVDVESDFHA----KVPVVVCRDRKSGLLCRVSAGNDMACLTT 480
>gi|222136622 prostate and testis expressed 3 [Homo sapiens]
Length = 98
Score = 29.3 bits (64), Expect = 0.81
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 39 CRLEPGQQCLTTHAYLGKMWVFSNLRCGTPEEPCQE-AFNQTNRKLGLTYNTTCCNKDNC 97
C + G+ C+ Y S + C ++ C++ F+ NR TY TCCN + C
Sbjct: 42 CTAQKGEACMLLRIYQRNTLQISYMVC---QKFCRDMTFDLRNR----TYVHTCCNYNYC 94
Query: 98 N 98
N
Sbjct: 95 N 95
>gi|11321575 lymphocyte antigen 6 complex, locus D [Homo sapiens]
Length = 128
Score = 28.5 bits (62), Expect = 1.4
Identities = 30/123 (24%), Positives = 45/123 (36%), Gaps = 7/123 (5%)
Query: 3 ALMLLTLSVLLCWVSADIRCHSCYKVPVLGCVDRQSCRLEPGQQCLTTHAYLGKMWVFSN 62
AL+LL + + +RCH C C C + C TT+
Sbjct: 4 ALLLLAALAVATGPALTLRCHVCTSSS--NCKHSVVCPAS-SRFCKTTNTVEPLRGNLVK 60
Query: 63 LRCGTPEEPCQEAFNQTNRKLGLTYNTTCCNKDNCNSAGPRPTPALGLVFLTSLA-GLGL 121
C E C ++ + T +T CC +D CN P + ++L+ GL L
Sbjct: 61 KDCA---ESCTPSYTLQGQVSSGTSSTQCCQEDLCNEKLHNAAPTRTALAHSALSLGLAL 117
Query: 122 WLL 124
LL
Sbjct: 118 SLL 120
>gi|195963412 transforming growth factor, beta receptor I isoform 2
precursor [Homo sapiens]
Length = 426
Score = 28.1 bits (61), Expect = 1.8
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 82 KLGLTYNTTCCNKDNCNSAGPRPTPALGLVFLTSLA 117
K G T CCN+D+CN PT L L+ ++A
Sbjct: 91 KTGSVTTTYCCNQDHCNKI-ELPTTGLPLLVQRTIA 125
>gi|4759226 transforming growth factor, beta receptor I isoform 1
precursor [Homo sapiens]
Length = 503
Score = 27.7 bits (60), Expect = 2.3
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 82 KLGLTYNTTCCNKDNCNS----AGPRPTPALGLVFLTSL 116
K G T CCN+D+CN + +P LG V L ++
Sbjct: 91 KTGSVTTTYCCNQDHCNKIELPTTVKSSPGLGPVELAAV 129
>gi|4504033 glycosylphosphatidylinositol anchored molecule like
protein [Homo sapiens]
Length = 158
Score = 27.7 bits (60), Expect = 2.3
Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 20 IRCHSCYKVPVLGCVDRQSCRLEPGQQCLTTHAYLG--KMWVFSNLRCGTPEEPCQEAFN 77
+RCH C + C + + C ++C+T + ++ V+ N E
Sbjct: 29 LRCHDCAVINDFNCPNIRVCPYHI-RRCMTISIRINSRELLVYKNCTNNCTFVYAAEQPP 87
Query: 78 QTNRKLGLT---YNTTCCNKDNCNSAGP 102
+ K+ T Y CCN CN+ GP
Sbjct: 88 EAPGKIFKTNSFYWVCCCNSMVCNAGGP 115
>gi|9966907 ARS component B precursor [Homo sapiens]
Length = 103
Score = 27.3 bits (59), Expect = 3.1
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 5/99 (5%)
Query: 3 ALMLLTLSVLLCWVSADIRCHSCYKVPVLGCVDRQSCRLEPGQQ-CLTTHAYLGKMWVFS 61
A+ LL ++ ++C++C K P+ R R +P C+TT + + F+
Sbjct: 6 AVQLLLVAAWSMGCGEALKCYTC-KEPMTSASCRTITRCKPEDTACMTTLVTVEAEYPFN 64
Query: 62 NLRCGTPEEPCQEAFNQTNR-KLGLTYNTTCCNKDNCNS 99
T C + T+ +G + CC +D CNS
Sbjct: 65 QSPVVT--RSCSSSCVATDPDSIGAAHLIFCCFRDLCNS 101
>gi|239753314 PREDICTED: similar to RIKEN cDNA C230030N03 [Homo
sapiens]
Length = 1183
Score = 26.9 bits (58), Expect = 4.0
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 72 CQEAFNQTNRKLGLTYNTTCCNKDNCNSAGPRPTPALGLVFLTSLAGLGL 121
C + + + G+ +T CC + +S+GP P + + L L+ + L
Sbjct: 164 CATSLERESLLAGVPRHTGCCLQRATDSSGPEPVQGVAVQDLRGLSSVSL 213
>gi|157502199 CUB and Sushi multiple domains 1 [Homo sapiens]
Length = 3565
Score = 26.9 bits (58), Expect = 4.0
Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 8/68 (11%)
Query: 47 CLTTHAYLGKMWVFSNLRCGTPEEPCQEAFNQTNRKLGLTYNTTC--------CNKDNCN 98
CL H + G+ V + CG P P N + L N TC ++ C
Sbjct: 2721 CLQDHKWSGQTPVCVPITCGHPGNPAHGFTNGSEFNLNDVVNFTCNTGYLLQGVSRAQCR 2780
Query: 99 SAGPRPTP 106
S G +P
Sbjct: 2781 SNGQWSSP 2788
>gi|29294645 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]
Length = 116
Score = 26.9 bits (58), Expect = 4.0
Identities = 37/123 (30%), Positives = 47/123 (38%), Gaps = 12/123 (9%)
Query: 1 MKALMLLTLSVLLCWVSAD-IRCHSC-YKVPVLGCVDRQSCRLEPGQQCLTTHAYLGKMW 58
M L+ L L VL+ A + CH C Y C + C C+TT Y
Sbjct: 1 MTPLLTLILVVLMGLPLAQALDCHVCAYNGD--NCFNPMRCPAMVAY-CMTTRTYYTPTR 57
Query: 59 VFSNLRCGTPEEPCQEAFNQTNRKLGLTYNTTCCNKDNCNSAG--PRPTPALGLVFLTSL 116
+ + C P C E K T T+CC D CN G T AL + L +L
Sbjct: 58 MKVSKSC-VPR--CFETVYDGYSKHAST--TSCCQYDLCNGTGLATPATLALAPILLATL 112
Query: 117 AGL 119
GL
Sbjct: 113 WGL 115
>gi|29337283 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]
Length = 116
Score = 26.9 bits (58), Expect = 4.0
Identities = 37/123 (30%), Positives = 47/123 (38%), Gaps = 12/123 (9%)
Query: 1 MKALMLLTLSVLLCWVSAD-IRCHSC-YKVPVLGCVDRQSCRLEPGQQCLTTHAYLGKMW 58
M L+ L L VL+ A + CH C Y C + C C+TT Y
Sbjct: 1 MTPLLTLILVVLMGLPLAQALDCHVCAYNGD--NCFNPMRCPAMVAY-CMTTRTYYTPTR 57
Query: 59 VFSNLRCGTPEEPCQEAFNQTNRKLGLTYNTTCCNKDNCNSAG--PRPTPALGLVFLTSL 116
+ + C P C E K T T+CC D CN G T AL + L +L
Sbjct: 58 MKVSKSC-VPR--CFETVYDGYSKHAST--TSCCQYDLCNGTGLATPATLALAPILLATL 112
Query: 117 AGL 119
GL
Sbjct: 113 WGL 115
>gi|29294641 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]
Length = 116
Score = 26.9 bits (58), Expect = 4.0
Identities = 37/123 (30%), Positives = 47/123 (38%), Gaps = 12/123 (9%)
Query: 1 MKALMLLTLSVLLCWVSAD-IRCHSC-YKVPVLGCVDRQSCRLEPGQQCLTTHAYLGKMW 58
M L+ L L VL+ A + CH C Y C + C C+TT Y
Sbjct: 1 MTPLLTLILVVLMGLPLAQALDCHVCAYNGD--NCFNPMRCPAMVAY-CMTTRTYYTPTR 57
Query: 59 VFSNLRCGTPEEPCQEAFNQTNRKLGLTYNTTCCNKDNCNSAG--PRPTPALGLVFLTSL 116
+ + C P C E K T T+CC D CN G T AL + L +L
Sbjct: 58 MKVSKSC-VPR--CFETVYDGYSKHAST--TSCCQYDLCNGTGLATPATLALAPILLATL 112
Query: 117 AGL 119
GL
Sbjct: 113 WGL 115
>gi|45387925 LY6/PLAUR domain containing 2 [Homo sapiens]
Length = 125
Score = 26.9 bits (58), Expect = 4.0
Identities = 34/123 (27%), Positives = 48/123 (39%), Gaps = 6/123 (4%)
Query: 4 LMLLTLSVLLCWVSAD-IRCHSCYK-VPVLGCVDRQSCRLEPGQQCLTTHAYLGKMWVFS 61
L LL L + C A +RC+ C + V CV +C C TT + V+
Sbjct: 6 LALLALVLAACGELAPALRCYVCPEPTGVSDCVTIATCTTNE-TMCKTT--LYSREIVYP 62
Query: 62 NLRCGTPEEPCQEAFNQTNRK-LGLTYNTTCCNKDNCNSAGPRPTPALGLVFLTSLAGLG 120
T + C ++ +G T +CCN + CN G +L LT L L
Sbjct: 63 FQGDSTVTKSCASKCKPSDVDGIGQTLPVSCCNTELCNVDGAPALNSLHCGALTLLPLLS 122
Query: 121 LWL 123
L L
Sbjct: 123 LRL 125
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.138 0.473
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,786,817
Number of Sequences: 37866
Number of extensions: 273506
Number of successful extensions: 712
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 695
Number of HSP's gapped (non-prelim): 45
length of query: 125
length of database: 18,247,518
effective HSP length: 90
effective length of query: 35
effective length of database: 14,839,578
effective search space: 519385230
effective search space used: 519385230
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.