Guide to the Human Genome
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Name: LOC100291736 Sequence: fasta or formatted (268aa) NCBI GI: 239754502
Description:

PREDICTED: similar to hCG2040562

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         17           2
 C cysteine            2.2          6           1
 D aspartate           6.0         16           2
 E glutamate           5.6         15           2
 F phenylalanine       2.2          6           2
 G glycine             9.0         24           2
 H histidine           1.5          4           1
 I isoleucine          5.2         14           1
 K lysine              4.9         13           1
 L leucine            11.6         31           2
 M methionine          1.5          4           1
 N asparagine          3.4          9           1
 P proline             7.1         19           2
 Q glutamine           5.2         14           2
 R arginine            7.1         19           1
 S serine              7.1         19           2
 T threonine           6.0         16           2
 V valine              3.0          8           1
 W tryptophan          2.2          6           1
 Y tyrosine            3.0          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2040562 
LOC100290273          1.000   PREDICTED: hypothetical protein XP_002346902 
LOC100287613          1.000   PREDICTED: hypothetical protein XP_002342736 
LOC100287613          1.000   PREDICTED: similar to hCG2040562 
ARHGAP20              0.258   Rho GTPase activating protein 20 
LOC100129500          0.011   PREDICTED: hypothetical protein isoform 1 
LOC100129500          0.011   PREDICTED: hypothetical protein isoform 2 
LOC100129500          0.011   PREDICTED: hypothetical protein 
LOC100129500          0.011   PREDICTED: hypothetical protein 
C12orf34              0.008   hypothetical protein LOC84915 
AXL                   0.008   AXL receptor tyrosine kinase isoform 2 
AXL                   0.008   AXL receptor tyrosine kinase isoform 1 
SGEF                  0.008   Src homology 3 domain-containing guanine nucleotide...
HPX-2                 0.006   PREDICTED: similar to double homeobox, 4 
LOC286002             0.006   PREDICTED: hypothetical protein LOC286002 
LOC286002             0.006   PREDICTED: hypothetical protein LOC286002 
LOC286002             0.006   PREDICTED: hypothetical protein LOC286002 
DYNC1I1               0.006   dynein, cytoplasmic 1, intermediate chain 1 isoform a...
DYNC1I1               0.006   dynein, cytoplasmic 1, intermediate chain 1 isoform...
FTSJD2                0.006   FtsJ methyltransferase domain containing 2 
MED15                 0.006   mediator complex subunit 15 isoform a 
MED15                 0.006   mediator complex subunit 15 isoform b 
YLPM1                 0.006   YLP motif containing 1 
LOC100129979          0.006   PREDICTED: similar to FLJ00287 protein 
MCC                   0.006   mutated in colorectal cancers isoform 1 
HEPACAM               0.006   hepatocyte cell adhesion molecule 
MCC                   0.006   mutated in colorectal cancers isoform 2 
FAT2                  0.006   FAT tumor suppressor 2 precursor 
VIT                   0.006   vitrin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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