Guide to the Human Genome
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Name: TRMT2A Sequence: fasta or formatted (625aa) NCBI GI: 51173878
Description:

HpaII tiny fragments locus 9C

Referenced in:

tRNA Enzymes

Other entries for this name:
alt mRNA [625aa] HpaII tiny fragments locus 9C
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3         58           2
 C cysteine            2.9         18           2
 D aspartate           3.7         23           2
 E glutamate           7.4         46           2
 F phenylalanine       3.8         24           2
 G glycine             7.0         44           2
 H histidine           3.0         19           1
 I isoleucine          2.6         16           1
 K lysine              4.5         28           1
 L leucine             9.8         61           2
 M methionine          1.1          7           1
 N asparagine          2.7         17           1
 P proline             8.6         54           2
 Q glutamine           4.6         29           2
 R arginine            7.2         45           4
 S serine              5.4         34           3
 T threonine           5.6         35           1
 V valine              8.0         50           2
 W tryptophan          0.8          5           1
 Y tyrosine            1.9         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   HpaII tiny fragments locus 9C 
TRMT2A                1.000   HpaII tiny fragments locus 9C 
TRMT2B                0.228   TRM2 tRNA methyltransferase 2 homolog B 
A2BP1                 0.013   ataxin 2-binding protein 1 isoform 4 
A2BP1                 0.013   ataxin 2-binding protein 1 isoform 5 
A2BP1                 0.013   ataxin 2-binding protein 1 isoform 3 
A2BP1                 0.013   ataxin 2-binding protein 1 isoform 2 
A2BP1                 0.013   ataxin 2-binding protein 1 isoform 1 
A2BP1                 0.013   ataxin 2-binding protein 1 isoform 4 
RBM9                  0.013   RNA binding motif protein 9 isoform 6 
RBM9                  0.013   RNA binding motif protein 9 isoform 5 
RBM9                  0.013   RNA binding motif protein 9 isoform 4 
RBM9                  0.013   RNA binding motif protein 9 isoform 3 
RBM9                  0.013   RNA binding motif protein 9 isoform 1 
RBM9                  0.013   RNA binding motif protein 9 isoform 2 
HRNBP3                0.010   hexaribonucleotide binding protein 3 
METTL5                0.008   methyltransferase like 5 
MTHFSD                0.006   methenyltetrahydrofolate synthetase domain containi...
MTHFSD                0.006   methenyltetrahydrofolate synthetase domain containi...
MTHFSD                0.006   methenyltetrahydrofolate synthetase domain containi...
MTHFSD                0.006   methenyltetrahydrofolate synthetase domain containi...
MTHFSD                0.006   methenyltetrahydrofolate synthetase domain containi...
ZNF638                0.006   zinc finger protein 638 
ZNF638                0.006   zinc finger protein 638 
NRG2                  0.006   neuregulin 2 isoform 2 
NRG2                  0.006   neuregulin 2 isoform 4 
NRG2                  0.006   neuregulin 2 isoform 3 
NRG2                  0.006   neuregulin 2 isoform 1 
BRUNOL5               0.006   bruno-like 5, RNA binding protein isoform 2 
BRUNOL5               0.006   bruno-like 5, RNA binding protein isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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