Guide to the Human Genome
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Name: TRMT2B Sequence: fasta or formatted (504aa) NCBI GI: 20149688
Description:

TRM2 tRNA methyltransferase 2 homolog B

Referenced in:

tRNA Enzymes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         27           2
 C cysteine            2.6         13           2
 D aspartate           2.4         12           1
 E glutamate           6.0         30           2
 F phenylalanine       4.8         24           2
 G glycine             7.3         37           2
 H histidine           3.4         17           1
 I isoleucine          5.4         27           2
 K lysine              5.6         28           2
 L leucine            11.5         58           2
 M methionine          1.2          6           1
 N asparagine          3.4         17           1
 P proline             6.2         31           2
 Q glutamine           5.8         29           2
 R arginine            5.2         26           2
 S serine              6.7         34           1
 T threonine           5.8         29           2
 V valine              7.5         38           2
 W tryptophan          1.4          7           1
 Y tyrosine            2.8         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TRM2 tRNA methyltransferase 2 homolog B 
TRMT2A                0.285   HpaII tiny fragments locus 9C 
TRMT2A                0.285   HpaII tiny fragments locus 9C 
PRMT3                 0.010   protein arginine methyltransferase 3 isoform 3 [Hom...
PRMT3                 0.010   protein arginine methyltransferase 3 isoform 2 [Hom...
PRMT3                 0.010   protein arginine methyltransferase 3 isoform 1 [Homo...
CASP8AP2              0.006   caspase 8 associated protein 2 
CASP8AP2              0.006   caspase 8 associated protein 2 
CASP8AP2              0.006   caspase 8 associated protein 2 
HEMK1                 0.006   HemK methyltransferase family member 1 
PRMT2                 0.005   HMT1 hnRNP methyltransferase-like 1 
PRMT2                 0.005   HMT1 hnRNP methyltransferase-like 1 
ZNF445                0.005   zinc finger protein 445 
LOC727962             0.005   PREDICTED: similar to collagen, type I, alpha 2 [Ho...
LOC653203             0.005   PREDICTED: hypothetical protein 
LOC401387             0.004   leucine-rich repeat and death domain-containing pro...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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