Guide to the Human Genome
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Name: RDH5 Sequence: fasta or formatted (318aa) NCBI GI: 50726952
Description:

retinol dehydrogenase 5 (11-cis and 9-cis)

Referenced in:

Alcohol and Aldehyde Dehydrogenases
Steroid Hormones

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         32           2
 C cysteine            1.9          6           1
 D aspartate           4.4         14           2
 E glutamate           2.5          8           1
 F phenylalanine       3.8         12           2
 G glycine             7.5         24           3
 H histidine           1.9          6           1
 I isoleucine          3.5         11           2
 K lysine              2.8          9           1
 L leucine            15.7         50           3
 M methionine          1.6          5           1
 N asparagine          2.8          9           2
 P proline             6.0         19           2
 Q glutamine           4.7         15           2
 R arginine            6.9         22           2
 S serine              5.7         18           2
 T threonine           6.0         19           2
 V valine              7.5         24           1
 W tryptophan          2.8          9           1
 Y tyrosine            1.9          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   retinol dehydrogenase 5 (11-cis and 9-cis) 
RDH16                 0.498   retinol dehydrogenase 16 
HSD17B6               0.467   hydroxysteroid (17-beta) dehydrogenase 6 
SDR9C7                0.443   short chain dehydrogenase/reductase family 9C, membe...
DHRS9                 0.402   NADP-dependent retinol dehydrogenase/reductase [Homo...
DHRS9                 0.402   NADP-dependent retinol dehydrogenase/reductase [Hom...
DHRS9                 0.402   NADP-dependent retinol dehydrogenase/reductase [Hom...
DHRS9                 0.402   NADP-dependent retinol dehydrogenase/reductase [Homo...
BDH1                  0.234   3-hydroxybutyrate dehydrogenase, type 1 precursor [H...
BDH1                  0.234   3-hydroxybutyrate dehydrogenase, type 1 precursor [H...
BDH1                  0.234   3-hydroxybutyrate dehydrogenase, type 1 precursor [H...
HSD11B2               0.210   hydroxysteroid (11-beta) dehydrogenase 2 
HSD17B2               0.200   hydroxysteroid (17-beta) dehydrogenase 2 
RDH8                  0.099   retinol dehydrogenase 8 (all-trans) 
DHRS7B                0.092   dehydrogenase/reductase (SDR family) member 7B [Homo...
HSD17B1               0.081   hydroxysteroid (17-beta) dehydrogenase 1 
DHRS7                 0.076   dehydrogenase/reductase (SDR family) member 7 
SDR16C5               0.073   epidermal retinal dehydrogenase 2 
RDH13                 0.069   retinol dehydrogenase 13 isoform 1 
HSD17B11              0.066   estradiol 17-beta-dehydrogenase 11 
RDH12                 0.066   retinol dehydrogenase 12 
CBR4                  0.066   carbonic reductase 4 
HSD11B1               0.065   11-beta-hydroxysteroid dehydrogenase 1 
HSD11B1               0.065   11-beta-hydroxysteroid dehydrogenase 1 
HSD17B10              0.063   hydroxysteroid (17-beta) dehydrogenase 10 isoform 1 [...
DECR1                 0.061   2,4-dienoyl CoA reductase 1 precursor 
RDH11                 0.061   retinol dehydrogenase 11 
HSD17B14              0.060   dehydrogenase/reductase (SDR family) member 10 [Homo...
DHRS3                 0.057   dehydrogenase/reductase (SDR family) member 3 
RDH10                 0.057   retinol dehydrogenase 10 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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