Guide to the Human Genome
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Name: SLC35C2 Sequence: fasta or formatted (365aa) NCBI GI: 21314776
Description:

solute carrier family 35, member C2 isoform a

Referenced in:

Ovary, Uterus and Placenta
Solute Carrier Families

Other entries for this name:
alt prot [344aa] solute carrier family 35, member C2 isoform b
alt mRNA [365aa] solute carrier family 35, member C2 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         29           2
 C cysteine            1.1          4           1
 D aspartate           2.5          9           1
 E glutamate           4.1         15           4
 F phenylalanine       8.5         31           1
 G glycine             8.2         30           2
 H histidine           2.2          8           1
 I isoleucine          4.4         16           1
 K lysine              3.3         12           1
 L leucine            20.8         76           3
 M methionine          2.2          8           1
 N asparagine          1.6          6           1
 P proline             1.9          7           1
 Q glutamine           3.3         12           2
 R arginine            3.8         14           2
 S serine              8.5         31           2
 T threonine           5.2         19           1
 V valine              6.3         23           2
 W tryptophan          1.9          7           1
 Y tyrosine            2.2          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 35, member C2 isoform a 
SLC35C2               1.000   solute carrier family 35, member C2 isoform a 
SLC35C2               0.927   solute carrier family 35, member C2 isoform b 
LOC728661             0.064   similar to solute carrier family 35, member E2 [Hom...
SLC35E3               0.048   solute carrier family 35, member E2 
SLC35C1               0.047   GDP-fucose transporter 1 isoform a 
SLC35C1               0.047   GDP-fucose transporter 1 isoform b 
SLC35C1               0.047   GDP-fucose transporter 1 isoform b 
SLC35D2               0.044   solute carrier family 35, member D2 
SLC35E1               0.042   solute carrier family 35, member E1 
SLC35F1               0.026   solute carrier family 35, member F1 
SLC35D1               0.025   solute carrier family 35 (UDP-glucuronic acid/UDP-N-...
SLC35B1               0.019   solute carrier family 35, member B1 
SLC35B4               0.017   solute carrier family 35, member B4 
SLC35F4               0.017   solute carrier family 35, member F4 
SLC29A2               0.007   solute carrier family 29 (nucleoside transporters), ...
OR12D2                0.007   olfactory receptor, family 12, subfamily D, member 2...
FLJ20674              0.006   hypothetical protein FLJ20674 
OR4C16                0.006   olfactory receptor, family 4, subfamily C, member 1...
MSGN1                 0.004   mesogenin 1 
GPR137B               0.004   G protein-coupled receptor 137B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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