Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SLC35C2 Sequence: fasta or formatted (344aa) NCBI GI: 27881496
Description:

solute carrier family 35, member C2 isoform b

Referenced in:

Ovary, Uterus and Placenta
Solute Carrier Families

Other entries for this name:
alt prot [365aa] solute carrier family 35, member C2 isoform a
alt prot [365aa] solute carrier family 35, member C2 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         26           2
 C cysteine            1.2          4           1
 D aspartate           2.6          9           1
 E glutamate           4.4         15           4
 F phenylalanine       8.4         29           1
 G glycine             8.1         28           2
 H histidine           2.3          8           1
 I isoleucine          4.4         15           1
 K lysine              3.2         11           1
 L leucine            20.6         71           3
 M methionine          2.0          7           1
 N asparagine          1.7          6           1
 P proline             2.0          7           1
 Q glutamine           3.5         12           2
 R arginine            3.8         13           2
 S serine              9.0         31           2
 T threonine           5.2         18           1
 V valine              5.8         20           2
 W tryptophan          2.0          7           1
 Y tyrosine            2.0          7           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 35, member C2 isoform b 
SLC35C2               0.982   solute carrier family 35, member C2 isoform a 
SLC35C2               0.982   solute carrier family 35, member C2 isoform a 
SLC35C1               0.042   GDP-fucose transporter 1 isoform a 
SLC35C1               0.042   GDP-fucose transporter 1 isoform b 
SLC35C1               0.042   GDP-fucose transporter 1 isoform b 
LOC728661             0.042   similar to solute carrier family 35, member E2 [Hom...
SLC35E3               0.037   solute carrier family 35, member E2 
SLC35E1               0.031   solute carrier family 35, member E1 
SLC35D2               0.029   solute carrier family 35, member D2 
SLC35F1               0.017   solute carrier family 35, member F1 
SLC35B1               0.008   solute carrier family 35, member B1 
LOC146429             0.006   PREDICTED: hypothetical protein LOC146429 
SLC29A2               0.006   solute carrier family 29 (nucleoside transporters), ...
FLJ20674              0.006   hypothetical protein FLJ20674 
MSGN1                 0.005   mesogenin 1 
LOC146429             0.005   PREDICTED: hypothetical protein LOC146429 isoform 6...
LOC146429             0.005   PREDICTED: hypothetical protein LOC146429 isoform 1...
OR12D2                0.005   olfactory receptor, family 12, subfamily D, member 2...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press