Guide to the Human Genome
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Name: SLC35C1 Sequence: fasta or formatted (351aa) NCBI GI: 223671919
Description:

GDP-fucose transporter 1 isoform b

Referenced in:

Solute Carrier Families

Other entries for this name:
alt prot [364aa] GDP-fucose transporter 1 isoform a
alt mRNA [351aa] GDP-fucose transporter 1 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         29           2
 C cysteine            2.6          9           2
 D aspartate           2.6          9           1
 E glutamate           3.4         12           2
 F phenylalanine       5.7         20           1
 G glycine             8.3         29           2
 H histidine           0.6          2           1
 I isoleucine          3.7         13           3
 K lysine              3.7         13           2
 L leucine            16.2         57           5
 M methionine          2.6          9           2
 N asparagine          3.4         12           2
 P proline             3.7         13           1
 Q glutamine           2.3          8           1
 R arginine            2.6          9           1
 S serine              8.0         28           2
 T threonine           7.7         27           2
 V valine              8.5         30           2
 W tryptophan          2.6          9           2
 Y tyrosine            3.7         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   GDP-fucose transporter 1 isoform b 
SLC35C1               1.000   GDP-fucose transporter 1 isoform a 
SLC35C1               1.000   GDP-fucose transporter 1 isoform b 
SLC35D2               0.065   solute carrier family 35, member D2 
SLC35D1               0.059   solute carrier family 35 (UDP-glucuronic acid/UDP-N-...
SLC35C2               0.047   solute carrier family 35, member C2 isoform a 
SLC35C2               0.047   solute carrier family 35, member C2 isoform a 
LOC728661             0.041   similar to solute carrier family 35, member E2 [Hom...
SLC35E1               0.040   solute carrier family 35, member E1 
SLC35C2               0.040   solute carrier family 35, member C2 isoform b 
SLC35E3               0.040   solute carrier family 35, member E2 
SLC35E2               0.022   solute carrier family 35, member E2 
SLC35A1               0.018   solute carrier family 35 (CMP-sialic acid transporter...
SLC35B1               0.018   solute carrier family 35, member B1 
SLC35B4               0.012   solute carrier family 35, member B4 
OR8J3                 0.010   olfactory receptor, family 8, subfamily J, member 3 ...
OR8J1                 0.010   olfactory receptor, family 8, subfamily J, member 1 ...
TM9SF4                0.009   transmembrane 9 superfamily protein member 4 
AMAC1L2               0.007   acyl-malonyl condensing enzyme 
SLC16A6               0.007   solute carrier family 16, member 6 
AMAC1L1               0.006   PREDICTED: acyl-malonyl condensing enzyme 1-like 1 [...
SLC2A4                0.006   glucose transporter 4 
ADAMTS18              0.004   ADAM metallopeptidase with thrombospondin type 1 mot...
FLVCR1                0.004   feline leukemia virus subgroup C cellular receptor 1 ...
PION                  0.004   pigeon homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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