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Search of human proteins with 50301234
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|50301234 J-type co-chaperone HSC20 [Homo sapiens]
(235 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|50301234 J-type co-chaperone HSC20 [Homo sapiens] 488 e-138
gi|205277396 dynactin 1 isoform 4 [Homo sapiens] 34 0.095
gi|205277392 dynactin 1 isoform 3 [Homo sapiens] 34 0.095
gi|13259508 dynactin 1 isoform 2 [Homo sapiens] 34 0.095
gi|13259510 dynactin 1 isoform 1 [Homo sapiens] 34 0.095
gi|170932518 paxillin isoform 3 [Homo sapiens] 33 0.16
gi|170932516 paxillin isoform 2 [Homo sapiens] 33 0.16
gi|170932514 paxillin isoform 1 [Homo sapiens] 33 0.16
gi|88501736 DnaJ (Hsp40) homolog, subfamily B, member 2 isoform ... 33 0.16
gi|27151736 DnaJ (Hsp40) homolog, subfamily B, member 2 isoform ... 33 0.16
gi|6631095 minichromosome maintenance complex component 3 [Homo ... 33 0.21
gi|51477718 TATA box binding protein-associated factor, RNA poly... 32 0.36
gi|4557529 post-synaptic density protein 95 isoform 1 [Homo sapi... 31 1.1
gi|192447426 post-synaptic density protein 95 isoform 2 [Homo sa... 31 1.1
gi|155723000 mixed lineage kinase 4 [Homo sapiens] 31 1.1
gi|197116386 5'-nucleotidase domain containing 2 isoform 1 [Homo... 31 1.1
gi|16757970 niban protein isoform 2 [Homo sapiens] 30 1.4
gi|21361097 DNAJC25-GNG10 protein [Homo sapiens] 30 1.8
gi|205360840 DnaJ (Hsp40) homolog, subfamily A, member 3 isoform... 30 1.8
gi|205360838 DnaJ (Hsp40) homolog, subfamily A, member 3 isoform... 30 1.8
gi|118498347 DnaJ (Hsp40) homolog, subfamily C , member 25 [Homo... 30 1.8
gi|221136785 upstream binding transcription factor, RNA polymera... 30 2.3
gi|169166092 PREDICTED: hypothetical protein [Homo sapiens] 30 2.3
gi|87116683 proline/serine-rich coiled-coil 2 [Homo sapiens] 30 2.3
gi|134152708 arginine and glutamate rich 1 [Homo sapiens] 30 2.3
gi|110832843 TBP-associated factor 4 [Homo sapiens] 29 4.0
gi|55770834 centromere protein F [Homo sapiens] 29 4.0
gi|134031945 SCO-spondin [Homo sapiens] 29 4.0
gi|170295807 neuroserpin precursor [Homo sapiens] 28 5.2
gi|4826904 neuroserpin precursor [Homo sapiens] 28 5.2
>gi|50301234 J-type co-chaperone HSC20 [Homo sapiens]
Length = 235
Score = 488 bits (1255), Expect = e-138
Identities = 235/235 (100%), Positives = 235/235 (100%)
Query: 1 MWRGRAGALLRVWGFWPTGVPRRRPLSCDAASQAGSNYPRCWNCGGPWGPGREDRFFCPQ 60
MWRGRAGALLRVWGFWPTGVPRRRPLSCDAASQAGSNYPRCWNCGGPWGPGREDRFFCPQ
Sbjct: 1 MWRGRAGALLRVWGFWPTGVPRRRPLSCDAASQAGSNYPRCWNCGGPWGPGREDRFFCPQ 60
Query: 61 CRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKH 120
CRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKH
Sbjct: 61 CRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKH 120
Query: 121 STLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEIMEINEKLAEAESEAA 180
STLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEIMEINEKLAEAESEAA
Sbjct: 121 STLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEIMEINEKLAEAESEAA 180
Query: 181 MKEIESIVKAKQKEFTDNVSSAFEQDDFEEAKEILTKMRYFSNIEEKIKLKKIPL 235
MKEIESIVKAKQKEFTDNVSSAFEQDDFEEAKEILTKMRYFSNIEEKIKLKKIPL
Sbjct: 181 MKEIESIVKAKQKEFTDNVSSAFEQDDFEEAKEILTKMRYFSNIEEKIKLKKIPL 235
>gi|205277396 dynactin 1 isoform 4 [Homo sapiens]
Length = 1139
Score = 34.3 bits (77), Expect = 0.095
Identities = 30/108 (27%), Positives = 58/108 (53%), Gaps = 21/108 (19%)
Query: 147 IEIPERTDYEM-DRQFLIEIMEINEKLAEAESEAAMKEIES-------------IVKAK- 191
+E ER EM D IE+ +++++AE +E+ +E+E+ I+KA+
Sbjct: 153 LEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEI 212
Query: 192 QKEFTDNVSSAFEQDDFEE----AKEILTKMRYFSNIE--EKIKLKKI 233
+++ +D +S+++ EE K+ L +MR S+ E E +KL+K+
Sbjct: 213 EEKGSDGAASSYQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKL 260
>gi|205277392 dynactin 1 isoform 3 [Homo sapiens]
Length = 1253
Score = 34.3 bits (77), Expect = 0.095
Identities = 30/108 (27%), Positives = 58/108 (53%), Gaps = 21/108 (19%)
Query: 147 IEIPERTDYEM-DRQFLIEIMEINEKLAEAESEAAMKEIES-------------IVKAK- 191
+E ER EM D IE+ +++++AE +E+ +E+E+ I+KA+
Sbjct: 267 LEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEI 326
Query: 192 QKEFTDNVSSAFEQDDFEE----AKEILTKMRYFSNIE--EKIKLKKI 233
+++ +D +S+++ EE K+ L +MR S+ E E +KL+K+
Sbjct: 327 EEKGSDGAASSYQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKL 374
>gi|13259508 dynactin 1 isoform 2 [Homo sapiens]
Length = 1144
Score = 34.3 bits (77), Expect = 0.095
Identities = 30/108 (27%), Positives = 58/108 (53%), Gaps = 21/108 (19%)
Query: 147 IEIPERTDYEM-DRQFLIEIMEINEKLAEAESEAAMKEIES-------------IVKAK- 191
+E ER EM D IE+ +++++AE +E+ +E+E+ I+KA+
Sbjct: 153 LEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEI 212
Query: 192 QKEFTDNVSSAFEQDDFEE----AKEILTKMRYFSNIE--EKIKLKKI 233
+++ +D +S+++ EE K+ L +MR S+ E E +KL+K+
Sbjct: 213 EEKGSDGAASSYQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKL 260
>gi|13259510 dynactin 1 isoform 1 [Homo sapiens]
Length = 1278
Score = 34.3 bits (77), Expect = 0.095
Identities = 30/108 (27%), Positives = 58/108 (53%), Gaps = 21/108 (19%)
Query: 147 IEIPERTDYEM-DRQFLIEIMEINEKLAEAESEAAMKEIES-------------IVKAK- 191
+E ER EM D IE+ +++++AE +E+ +E+E+ I+KA+
Sbjct: 287 LEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEI 346
Query: 192 QKEFTDNVSSAFEQDDFEE----AKEILTKMRYFSNIE--EKIKLKKI 233
+++ +D +S+++ EE K+ L +MR S+ E E +KL+K+
Sbjct: 347 EEKGSDGAASSYQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKL 394
>gi|170932518 paxillin isoform 3 [Homo sapiens]
Length = 424
Score = 33.5 bits (75), Expect = 0.16
Identities = 27/92 (29%), Positives = 35/92 (38%), Gaps = 30/92 (32%)
Query: 39 PRCWNCGGP------------WGPGREDRFFCPQCRALQAPDP----------TRDYFSL 76
PRC+ C GP W P + FFC QC A P+ +DYF +
Sbjct: 248 PRCYYCNGPILDKVVTALDRTWHP---EHFFCAQCGAFFGPEGFHEKDGKAYCRKDYFDM 304
Query: 77 M--DCNRSFRVDTAKLQHRYQQLQRLVHPDFF 106
C R A L++ L L HP+ F
Sbjct: 305 FAPKCGGCAR---AILENYISALNTLWHPECF 333
>gi|170932516 paxillin isoform 2 [Homo sapiens]
Length = 557
Score = 33.5 bits (75), Expect = 0.16
Identities = 27/92 (29%), Positives = 35/92 (38%), Gaps = 30/92 (32%)
Query: 39 PRCWNCGGP------------WGPGREDRFFCPQCRALQAPDP----------TRDYFSL 76
PRC+ C GP W P + FFC QC A P+ +DYF +
Sbjct: 381 PRCYYCNGPILDKVVTALDRTWHP---EHFFCAQCGAFFGPEGFHEKDGKAYCRKDYFDM 437
Query: 77 M--DCNRSFRVDTAKLQHRYQQLQRLVHPDFF 106
C R A L++ L L HP+ F
Sbjct: 438 FAPKCGGCAR---AILENYISALNTLWHPECF 466
>gi|170932514 paxillin isoform 1 [Homo sapiens]
Length = 591
Score = 33.5 bits (75), Expect = 0.16
Identities = 27/92 (29%), Positives = 35/92 (38%), Gaps = 30/92 (32%)
Query: 39 PRCWNCGGP------------WGPGREDRFFCPQCRALQAPDP----------TRDYFSL 76
PRC+ C GP W P + FFC QC A P+ +DYF +
Sbjct: 415 PRCYYCNGPILDKVVTALDRTWHP---EHFFCAQCGAFFGPEGFHEKDGKAYCRKDYFDM 471
Query: 77 M--DCNRSFRVDTAKLQHRYQQLQRLVHPDFF 106
C R A L++ L L HP+ F
Sbjct: 472 FAPKCGGCAR---AILENYISALNTLWHPECF 500
>gi|88501736 DnaJ (Hsp40) homolog, subfamily B, member 2 isoform a
[Homo sapiens]
Length = 277
Score = 33.5 bits (75), Expect = 0.16
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 73 YFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLL 132
Y+ ++D RS D K +R + LQ HPD ++ K+F+EK V +AY+ L
Sbjct: 4 YYEILDVPRSASADDIKKAYRRKALQW--HPD----KNPDNKEFAEKKFKEVAEAYEVLS 57
Query: 133 APLSRGLY 140
R +Y
Sbjct: 58 DKHKREIY 65
>gi|27151736 DnaJ (Hsp40) homolog, subfamily B, member 2 isoform b
[Homo sapiens]
Length = 324
Score = 33.5 bits (75), Expect = 0.16
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 73 YFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLL 132
Y+ ++D RS D K +R + LQ HPD ++ K+F+EK V +AY+ L
Sbjct: 4 YYEILDVPRSASADDIKKAYRRKALQW--HPD----KNPDNKEFAEKKFKEVAEAYEVLS 57
Query: 133 APLSRGLY 140
R +Y
Sbjct: 58 DKHKREIY 65
>gi|6631095 minichromosome maintenance complex component 3 [Homo
sapiens]
Length = 808
Score = 33.1 bits (74), Expect = 0.21
Identities = 29/133 (21%), Positives = 49/133 (36%), Gaps = 7/133 (5%)
Query: 106 FSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHGIEI------PERTDYEMDR 159
FSQ Q + EKH L++ K +S +H +I E Y +
Sbjct: 534 FSQEDQQDTQIYEKHDNLLHGTKKKKEKMVSAAFMKKYIHVAKIIKPVLTQESATYIAEE 593
Query: 160 QFLIEIMEINEKLAEAESEAAMKEIESIVKAKQKEFTDNVSSAFEQDDFEEAKEILTKMR 219
+ + S + +E++++ +S + D EEA E L +
Sbjct: 594 YSRLRSQDSMSSDTARTSPVTARTLETLIRLATAHAKARMSKTVDLQDAEEAVE-LVQYA 652
Query: 220 YFSNIEEKIKLKK 232
YF + EK K +K
Sbjct: 653 YFKKVLEKEKKRK 665
>gi|51477718 TATA box binding protein-associated factor, RNA
polymerase II, Q [Homo sapiens]
Length = 462
Score = 32.3 bits (72), Expect = 0.36
Identities = 18/76 (23%), Positives = 39/76 (51%)
Query: 157 MDRQFLIEIMEINEKLAEAESEAAMKEIESIVKAKQKEFTDNVSSAFEQDDFEEAKEILT 216
++RQ E +E + A + + + EI+ ++ K+K+ + A Q D E LT
Sbjct: 367 LERQLQAEFIESGQYRANEGTSSIVMEIQKQIEKKEKKLHKIQNKAQRQKDLIMKVENLT 426
Query: 217 KMRYFSNIEEKIKLKK 232
+F ++ E+++L++
Sbjct: 427 LKNHFQSVLEQLELQE 442
>gi|4557529 post-synaptic density protein 95 isoform 1 [Homo
sapiens]
Length = 767
Score = 30.8 bits (68), Expect = 1.1
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 162 LIEIMEINEKLAEAESEAAMKEIESIVKAKQKEFTDNVSSAFEQDDFEE 210
L ++EIN+++ E E A K + K +Q EFT+ S+ E D FEE
Sbjct: 698 LENVLEINKRITE---EQARKAFDRATKLEQ-EFTECFSAIVEGDSFEE 742
>gi|192447426 post-synaptic density protein 95 isoform 2 [Homo
sapiens]
Length = 721
Score = 30.8 bits (68), Expect = 1.1
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 162 LIEIMEINEKLAEAESEAAMKEIESIVKAKQKEFTDNVSSAFEQDDFEE 210
L ++EIN+++ E E A K + K +Q EFT+ S+ E D FEE
Sbjct: 652 LENVLEINKRITE---EQARKAFDRATKLEQ-EFTECFSAIVEGDSFEE 696
>gi|155723000 mixed lineage kinase 4 [Homo sapiens]
Length = 1036
Score = 30.8 bits (68), Expect = 1.1
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 148 EIPERTDYEMDRQFLIEIMEINEKLAEAESEAAMKEIESIVKAKQKEFTDNVSSAFEQDD 207
E+P+ + + M + +EI ++ ++L E E +E E A Q++ + + EQ
Sbjct: 408 EMPQESFHSMQDDWKLEIQQMFDELRTKEKELRSREEELTRAALQQKSQEELLKRREQQL 467
Query: 208 FEEAKEILTK---MRYFSNIEEKIKLKK 232
E ++L + + F +EK K+KK
Sbjct: 468 AEREIDVLERELNILIFQLNQEKPKVKK 495
>gi|197116386 5'-nucleotidase domain containing 2 isoform 1 [Homo
sapiens]
Length = 557
Score = 30.8 bits (68), Expect = 1.1
Identities = 29/85 (34%), Positives = 35/85 (41%), Gaps = 23/85 (27%)
Query: 23 RRPLSCDA--ASQAGSNYPRCWNCGGPWGPGREDRFFCP---QCRALQAPDPTRDYFSLM 77
RR L C +A S+ P C CG P GPG CP + QAP D
Sbjct: 11 RRWLLCGGHGGPRAASSSPSCPGCGPP-GPGAH----CPGVPRSAPAQAPTSGADL---- 61
Query: 78 DCNRSFRVDTAKLQHRYQQLQRLVH 102
+A L RYQ ++RLVH
Sbjct: 62 ---------SAHLWARYQDMRRLVH 77
>gi|16757970 niban protein isoform 2 [Homo sapiens]
Length = 928
Score = 30.4 bits (67), Expect = 1.4
Identities = 29/147 (19%), Positives = 63/147 (42%), Gaps = 11/147 (7%)
Query: 95 QQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLK------LHGIE 148
++L + D + + D L+ +AY + +S GL LK G+E
Sbjct: 247 EELLPTLQTDLLPKMKGKKNDRKRTWLGLLEEAYTLVQHQVSEGLSALKEECRALTKGLE 306
Query: 149 IPERTDYEM---DRQFLIEIMEINEKLAEAESEAAMKEIESIVKAKQKEFTDNVSSAFEQ 205
R+D + + +LI +I +A+ ++ ++ ++ + + +E VSS F +
Sbjct: 307 GTIRSDMDQIVNSKNYLIG--KIKAMVAQPAEKSCLESVQPFLASILEELMGPVSSGFSE 364
Query: 206 DDFEEAKEILTKMRYFSNIEEKIKLKK 232
KE+ + F ++ ++LK+
Sbjct: 365 VRVLFEKEVNEVSQNFQTTKDSVQLKE 391
>gi|21361097 DNAJC25-GNG10 protein [Homo sapiens]
Length = 153
Score = 30.0 bits (66), Expect = 1.8
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 70 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTE-----KDFSEKHSTLV 124
TRD + ++ +RS A++ Y+QL R HPD + + E +E+ LV
Sbjct: 47 TRDCYEVLGVSRS--AGKAEIARAYRQLARRYHPDRYRPQPGDEGPGRTPQSAEEAFLLV 104
Query: 125 NDAYKTL 131
AY+TL
Sbjct: 105 ATAYETL 111
>gi|205360840 DnaJ (Hsp40) homolog, subfamily A, member 3 isoform 2
[Homo sapiens]
Length = 453
Score = 30.0 bits (66), Expect = 1.8
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 52 REDRFFCPQCRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQ 111
+ + F C AP DY+ ++ R+ +++ Y QL + HPD +
Sbjct: 73 KHNPFICTASFHTSAPLAKEDYYQILGVPRN--ASQKEIKKAYYQLAKKYHPDTNKDDPK 130
Query: 112 TEKDFSEKHSTLVNDAYKTLLAPLSRGLY 140
++ FS+ + +AY+ L + R Y
Sbjct: 131 AKEKFSQ-----LAEAYEVLSDEVKRKQY 154
>gi|205360838 DnaJ (Hsp40) homolog, subfamily A, member 3 isoform 1
[Homo sapiens]
Length = 480
Score = 30.0 bits (66), Expect = 1.8
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 52 REDRFFCPQCRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQ 111
+ + F C AP DY+ ++ R+ +++ Y QL + HPD +
Sbjct: 73 KHNPFICTASFHTSAPLAKEDYYQILGVPRN--ASQKEIKKAYYQLAKKYHPDTNKDDPK 130
Query: 112 TEKDFSEKHSTLVNDAYKTLLAPLSRGLY 140
++ FS+ + +AY+ L + R Y
Sbjct: 131 AKEKFSQ-----LAEAYEVLSDEVKRKQY 154
>gi|118498347 DnaJ (Hsp40) homolog, subfamily C , member 25 [Homo
sapiens]
Length = 360
Score = 30.0 bits (66), Expect = 1.8
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 70 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTE-----KDFSEKHSTLV 124
TRD + ++ +RS A++ Y+QL R HPD + + E +E+ LV
Sbjct: 47 TRDCYEVLGVSRS--AGKAEIARAYRQLARRYHPDRYRPQPGDEGPGRTPQSAEEAFLLV 104
Query: 125 NDAYKTL 131
AY+TL
Sbjct: 105 ATAYETL 111
>gi|221136785 upstream binding transcription factor, RNA polymerase
I-like 1 [Homo sapiens]
Length = 393
Score = 29.6 bits (65), Expect = 2.3
Identities = 32/138 (23%), Positives = 57/138 (41%), Gaps = 10/138 (7%)
Query: 107 SQRSQTEKDFSEKHSTLVNDAYK------TLLAPLSRGLYLLKLHGI---EIPERTDYEM 157
SQ+ + DF ++ T N +K + + P R L K+ E+PE+ +
Sbjct: 90 SQKYRNGPDFPKRPLTAYNRFFKESWPQYSQMYPGMRSQELTKILSKKYRELPEQMKQKY 149
Query: 158 DRQFLIEIMEINEKLAEAESEAAMKEIESIVKAKQKEFTDNVSSAFEQDDFEEAKEILTK 217
+ F E E EKLA E ++ K+ + T N Q + EE + +
Sbjct: 150 IQDFRKEKQEFEEKLARFREEHP-DLVQKAKKSSVSKRTQNKVQKKFQKNIEEVRSLPKT 208
Query: 218 MRYFSNIEEKIKLKKIPL 235
R+F ++ + +K P+
Sbjct: 209 DRFFKKVKFHGEPQKPPM 226
>gi|169166092 PREDICTED: hypothetical protein [Homo sapiens]
Length = 178
Score = 29.6 bits (65), Expect = 2.3
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 12/68 (17%)
Query: 4 GRAGALLRVWGFWPTGVP---RRRPLSCDAASQAGSNYPRC--WN---CGGPWGPGREDR 55
G G R+ G WP P R+R L +AG +C W+ G G G D+
Sbjct: 53 GDCGEGRRLEGLWPPRAPAPGRQRELE----EEAGGGGKQCQDWSELGLGLGLGFGETDK 108
Query: 56 FFCPQCRA 63
+CP+CR+
Sbjct: 109 SWCPRCRS 116
>gi|87116683 proline/serine-rich coiled-coil 2 [Homo sapiens]
Length = 1989
Score = 29.6 bits (65), Expect = 2.3
Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 22/130 (16%)
Query: 106 FSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEI 165
F + ++++S K+ V + ++ LL LK I++ +E
Sbjct: 203 FGRSPSRKQNYSSKNENCVEETFEDLL---------LKYKQIQLE------------LEC 241
Query: 166 MEINEKLAEAESEAAMKEIESIVKAKQKEFTDNVSSAFEQDDFEEAKEILTKMRYFSNIE 225
+ +EKLA + E ++E + + + TDNVS + E A E T+++ F E
Sbjct: 242 INKDEKLALSSKEENVQEDPKTLNFEDQTSTDNVSIT-KDSSKEVAPEEKTQVKTFQAFE 300
Query: 226 EKIKLKKIPL 235
K +K+ L
Sbjct: 301 LKPLRQKLTL 310
>gi|134152708 arginine and glutamate rich 1 [Homo sapiens]
Length = 273
Score = 29.6 bits (65), Expect = 2.3
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 151 ERTDYEMDRQFLIEIMEINEKLAEAESEAAMKEIESIVKAKQKEFTDNVSSAFEQD---D 207
E E +RQ I EI EKL E E+ + +E +V + +E + E++
Sbjct: 104 EEKKAEFERQRKIRQQEIEEKLIEEET---ARRVEELVAKRVEEELEKRKDEIEREVLRR 160
Query: 208 FEEAKEILTK 217
EEAK I+ K
Sbjct: 161 VEEAKRIMEK 170
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 28.9 bits (63), Expect = 4.0
Identities = 14/69 (20%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 165 IMEINEKLAEAESEAAMKEIESIVKAKQKEFTDNVSSAFEQDD-FEEAKEILTKMRYFSN 223
I E++ + S A + ++++V+ K E + +++ DD +E+A ++ ++++F
Sbjct: 891 ITELHPDVVSYVSHATQQRLQNLVE-KISETAQQKNFSYKDDDRYEQASDVRAQLKFFEQ 949
Query: 224 IEEKIKLKK 232
+++ K +K
Sbjct: 950 LDQIEKQRK 958
>gi|55770834 centromere protein F [Homo sapiens]
Length = 3114
Score = 28.9 bits (63), Expect = 4.0
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 140 YLLKLHGIEIPERTDY-EMDRQFLIEIMEINEKLAEAESEAAMKEIESIVKAKQKEFTDN 198
Y L+LH E + + ++Q+ +EI EKL E + +++E + KE +N
Sbjct: 2699 YQLRLHEAEKKHQALLLDTNKQYEVEIQTYREKLTSKEECLSSQKLEIDLLKSSKEELNN 2758
Query: 199 VSSAFEQDDFEEAKEILTKMRYFSNIEEK 227
A Q E K + ++Y + ++++
Sbjct: 2759 SLKATTQILEELKKTKMDNLKYVNQLKKE 2787
>gi|134031945 SCO-spondin [Homo sapiens]
Length = 5147
Score = 28.9 bits (63), Expect = 4.0
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 32 SQAGSNYPR----CWNCGGPWGPGREDRFFCPQCRALQAPDPTRDYFSLMDC 79
SQAG P CW+ G P PG E + C C L + S + C
Sbjct: 4973 SQAGPCVPEDHCECWHLGRPHLPGSEWQEACESCLCLSGRPVCTQHCSPLTC 5024
>gi|170295807 neuroserpin precursor [Homo sapiens]
Length = 410
Score = 28.5 bits (62), Expect = 5.2
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 170 EKLAEAESEAAMKEIESIVKAKQKEFTDNV-SSAFEQDDFEEAKEILTKMRYFSN 223
+ L E + +KE ++V AK+ ++ + +S F Q+ F +E L M+ + N
Sbjct: 79 DSLKNGEEFSFLKEFSNMVTAKESQYVMKIANSLFVQNGFHVNEEFLQMMKKYFN 133
>gi|4826904 neuroserpin precursor [Homo sapiens]
Length = 410
Score = 28.5 bits (62), Expect = 5.2
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 170 EKLAEAESEAAMKEIESIVKAKQKEFTDNV-SSAFEQDDFEEAKEILTKMRYFSN 223
+ L E + +KE ++V AK+ ++ + +S F Q+ F +E L M+ + N
Sbjct: 79 DSLKNGEEFSFLKEFSNMVTAKESQYVMKIANSLFVQNGFHVNEEFLQMMKKYFN 133
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,947,188
Number of Sequences: 37866
Number of extensions: 426512
Number of successful extensions: 1763
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 1746
Number of HSP's gapped (non-prelim): 64
length of query: 235
length of database: 18,247,518
effective HSP length: 99
effective length of query: 136
effective length of database: 14,498,784
effective search space: 1971834624
effective search space used: 1971834624
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.