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Search of human proteins with 49355761
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens]
(367 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens] 728 0.0
gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens] 709 0.0
gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens] 583 e-167
gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens] 583 e-167
gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens] 582 e-166
gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens] 582 e-166
gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens] 582 e-166
gi|115511032 ELAV (embryonic lethal, abnormal vision, Drosophila... 575 e-164
gi|38201714 ELAV-like 1 [Homo sapiens] 462 e-130
gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo s... 114 2e-25
gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Ho... 111 9e-25
gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo... 111 9e-25
gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Ho... 111 9e-25
gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens] 110 3e-24
gi|4506447 RNA binding motif, single stranded interacting protei... 110 3e-24
gi|8400718 RNA binding motif, single stranded interacting protei... 110 3e-24
gi|51317355 RNA binding motif, single stranded interacting prote... 105 8e-23
gi|51317353 RNA binding motif, single stranded interacting prote... 105 8e-23
gi|51317351 RNA binding motif, single stranded interacting prote... 105 8e-23
gi|4506449 RNA binding motif, single stranded interacting protei... 104 1e-22
gi|4507499 TIA-1 related protein isoform 1 [Homo sapiens] 99 6e-21
gi|188219593 TIA1 protein isoform 1 [Homo sapiens] 98 1e-20
gi|77695912 TIA-1 related protein isoform 2 [Homo sapiens] 94 1e-19
gi|188219591 TIA1 protein isoform 2 [Homo sapiens] 94 3e-19
gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo s... 91 2e-18
gi|109948285 poly(A) binding protein, cytoplasmic 1-like 2B [Hom... 90 3e-18
gi|61175237 poly(A) binding protein, cytoplasmic 1-like 2A [Homo... 90 3e-18
gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo sa... 87 2e-17
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 86 4e-17
gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo s... 85 9e-17
>gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens]
Length = 367
Score = 728 bits (1880), Expect = 0.0
Identities = 367/367 (100%), Positives = 367/367 (100%)
Query: 1 MVTQILGAMESQVGGGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFG 60
MVTQILGAMESQVGGGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFG
Sbjct: 1 MVTQILGAMESQVGGGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFG 60
Query: 61 SIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSA 120
SIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSA
Sbjct: 61 SIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSA 120
Query: 121 SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 180
SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE
Sbjct: 121 SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 180
Query: 181 EAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLD 240
EAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLD
Sbjct: 181 EAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLD 240
Query: 241 NLLNMAYGVKSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVL 300
NLLNMAYGVKSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVL
Sbjct: 241 NLLNMAYGVKSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVL 300
Query: 301 WQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFK 360
WQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFK
Sbjct: 301 WQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFK 360
Query: 361 TSKQHKA 367
TSKQHKA
Sbjct: 361 TSKQHKA 367
>gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens]
Length = 360
Score = 709 bits (1831), Expect = 0.0
Identities = 360/367 (98%), Positives = 360/367 (98%), Gaps = 7/367 (1%)
Query: 1 MVTQILGAMESQVGGGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFG 60
MVTQILGAMESQVGGGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFG
Sbjct: 1 MVTQILGAMESQVGGGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFG 60
Query: 61 SIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSA 120
SIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSA
Sbjct: 61 SIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSA 120
Query: 121 SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 180
SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE
Sbjct: 121 SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 180
Query: 181 EAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLD 240
EAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLD
Sbjct: 181 EAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLD 240
Query: 241 NLLNMAYGVKSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVL 300
NLLNMAYGVK RFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVL
Sbjct: 241 NLLNMAYGVK-------RFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVL 293
Query: 301 WQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFK 360
WQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFK
Sbjct: 294 WQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFK 353
Query: 361 TSKQHKA 367
TSKQHKA
Sbjct: 354 TSKQHKA 360
>gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens]
Length = 369
Score = 583 bits (1504), Expect = e-167
Identities = 300/373 (80%), Positives = 319/373 (85%), Gaps = 18/373 (4%)
Query: 4 QILGAMESQVGGGPAGPALPNGPL---------LGTNGATDDSKTNLIVNYLPQNMTQDE 54
QI+ ME QV GP NGP + T TDDSKTNLIVNYLPQNMTQ+E
Sbjct: 6 QIISTMEPQVSNGPTSNT-SNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEE 64
Query: 55 FKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSY 114
F+SLFGSIG+IESCKLVRDKITGQSLGYGFVNY DP DA+KAINTLNGL+LQTKTIKVSY
Sbjct: 65 FRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 124
Query: 115 ARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 174
ARPSSASIRDANLYVSGLPKTM+QKE+EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD
Sbjct: 125 ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 184
Query: 175 KRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQT 234
KRIEAEEAIKGLNGQKP GA EPITVKFANNPSQK+ QALL+ LYQS RRY GPLHHQ
Sbjct: 185 KRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQA 244
Query: 235 QRFRLDNLLNMAYGVKSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPE 294
QRFRLDNLLNMAYGVK RFSPI IDGM+ L G+ + G G GWCIFVYNLSP+
Sbjct: 245 QRFRLDNLLNMAYGVK-------RFSPITIDGMTSLVGMNIP-GHTGTGWCIFVYNLSPD 296
Query: 295 ADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERV 354
+DESVLWQLFGPFGAV NVKVIRDF TNKCKGFGFVTMTNYDEAAMAIASLNGYRLG+RV
Sbjct: 297 SDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRV 356
Query: 355 LQVSFKTSKQHKA 367
LQVSFKT+K HK+
Sbjct: 357 LQVSFKTNKAHKS 369
>gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens]
Length = 366
Score = 583 bits (1504), Expect = e-167
Identities = 300/373 (80%), Positives = 319/373 (85%), Gaps = 18/373 (4%)
Query: 4 QILGAMESQVGGGPAGPALPNGPL---------LGTNGATDDSKTNLIVNYLPQNMTQDE 54
QI+ ME QV GP NGP + T TDDSKTNLIVNYLPQNMTQ+E
Sbjct: 3 QIISTMEPQVSNGPTSNT-SNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEE 61
Query: 55 FKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSY 114
F+SLFGSIG+IESCKLVRDKITGQSLGYGFVNY DP DA+KAINTLNGL+LQTKTIKVSY
Sbjct: 62 FRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 121
Query: 115 ARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 174
ARPSSASIRDANLYVSGLPKTM+QKE+EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD
Sbjct: 122 ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 181
Query: 175 KRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQT 234
KRIEAEEAIKGLNGQKP GA EPITVKFANNPSQK+ QALL+ LYQS RRY GPLHHQ
Sbjct: 182 KRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQA 241
Query: 235 QRFRLDNLLNMAYGVKSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPE 294
QRFRLDNLLNMAYGVK RFSPI IDGM+ L G+ + G G GWCIFVYNLSP+
Sbjct: 242 QRFRLDNLLNMAYGVK-------RFSPITIDGMTSLVGMNIP-GHTGTGWCIFVYNLSPD 293
Query: 295 ADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERV 354
+DESVLWQLFGPFGAV NVKVIRDF TNKCKGFGFVTMTNYDEAAMAIASLNGYRLG+RV
Sbjct: 294 SDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRV 353
Query: 355 LQVSFKTSKQHKA 367
LQVSFKT+K HK+
Sbjct: 354 LQVSFKTNKAHKS 366
>gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens]
Length = 380
Score = 582 bits (1500), Expect = e-166
Identities = 300/382 (78%), Positives = 321/382 (84%), Gaps = 18/382 (4%)
Query: 2 VTQILGAMESQVGGGPAGPALPNGPL---------LGTNGATDDSKTNLIVNYLPQNMTQ 52
+ I+ ME QV GP NGP + T TDDSKTNLIVNYLPQNMTQ
Sbjct: 1 MVMIISTMEPQVSNGPTSNT-SNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQ 59
Query: 53 DEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKV 112
+EF+SLFGSIG+IESCKLVRDKITGQSLGYGFVNY DP DA+KAINTLNGL+LQTKTIKV
Sbjct: 60 EEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV 119
Query: 113 SYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 172
SYARPSSASIRDANLYVSGLPKTM+QKE+EQLFSQYGRIITSRILVDQVTGVSRGVGFIR
Sbjct: 120 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 179
Query: 173 FDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHH 232
FDKRIEAEEAIKGLNGQKP GA EPITVKFANNPSQK+ QALL+ LYQS RRY GPLHH
Sbjct: 180 FDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHH 239
Query: 233 QTQRFRLDNLLNMAYGVK-------SPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWC 285
Q QRFRLDNLLNMAYGVK P + RFSPI IDGM+ L G+ + G G GWC
Sbjct: 240 QAQRFRLDNLLNMAYGVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIP-GHTGTGWC 298
Query: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
IFVYNLSP++DESVLWQLFGPFGAV NVKVIRDF TNKCKGFGFVTMTNYDEAAMAIASL
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 346 NGYRLGERVLQVSFKTSKQHKA 367
NGYRLG+RVLQVSFKT+K HK+
Sbjct: 359 NGYRLGDRVLQVSFKTNKAHKS 380
>gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens]
Length = 366
Score = 582 bits (1500), Expect = e-166
Identities = 299/375 (79%), Positives = 319/375 (85%), Gaps = 18/375 (4%)
Query: 2 VTQILGAMESQVGGGPAGPALPNGPL---------LGTNGATDDSKTNLIVNYLPQNMTQ 52
+ I+ ME QV GP NGP + T TDDSKTNLIVNYLPQNMTQ
Sbjct: 1 MVMIISTMEPQVSNGPTSNT-SNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQ 59
Query: 53 DEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKV 112
+EF+SLFGSIG+IESCKLVRDKITGQSLGYGFVNY DP DA+KAINTLNGL+LQTKTIKV
Sbjct: 60 EEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV 119
Query: 113 SYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 172
SYARPSSASIRDANLYVSGLPKTM+QKE+EQLFSQYGRIITSRILVDQVTGVSRGVGFIR
Sbjct: 120 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 179
Query: 173 FDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHH 232
FDKRIEAEEAIKGLNGQKP GA EPITVKFANNPSQK+ QALL+ LYQS RRY GPLHH
Sbjct: 180 FDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHH 239
Query: 233 QTQRFRLDNLLNMAYGVKSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLS 292
Q QRFRLDNLLNMAYGVK RFSPI IDGM+ L G+ + G G GWCIFVYNLS
Sbjct: 240 QAQRFRLDNLLNMAYGVK-------RFSPITIDGMTSLVGMNIP-GHTGTGWCIFVYNLS 291
Query: 293 PEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGE 352
P++DESVLWQLFGPFGAV NVKVIRDF TNKCKGFGFVTMTNYDEAAMAIASLNGYRLG+
Sbjct: 292 PDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD 351
Query: 353 RVLQVSFKTSKQHKA 367
RVLQVSFKT+K HK+
Sbjct: 352 RVLQVSFKTNKAHKS 366
>gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens]
Length = 383
Score = 582 bits (1499), Expect = e-166
Identities = 299/372 (80%), Positives = 318/372 (85%), Gaps = 18/372 (4%)
Query: 5 ILGAMESQVGGGPAGPALPNGPL---------LGTNGATDDSKTNLIVNYLPQNMTQDEF 55
I+ ME QV GP NGP + T TDDSKTNLIVNYLPQNMTQ+EF
Sbjct: 21 IISTMEPQVSNGPTSNT-SNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEF 79
Query: 56 KSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA 115
+SLFGSIG+IESCKLVRDKITGQSLGYGFVNY DP DA+KAINTLNGL+LQTKTIKVSYA
Sbjct: 80 RSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 139
Query: 116 RPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDK 175
RPSSASIRDANLYVSGLPKTM+QKE+EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDK
Sbjct: 140 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDK 199
Query: 176 RIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQ 235
RIEAEEAIKGLNGQKP GA EPITVKFANNPSQK+ QALL+ LYQS RRY GPLHHQ Q
Sbjct: 200 RIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQ 259
Query: 236 RFRLDNLLNMAYGVKSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEA 295
RFRLDNLLNMAYGVK RFSPI IDGM+ L G+ + G G GWCIFVYNLSP++
Sbjct: 260 RFRLDNLLNMAYGVK-------RFSPITIDGMTSLVGMNIP-GHTGTGWCIFVYNLSPDS 311
Query: 296 DESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVL 355
DESVLWQLFGPFGAV NVKVIRDF TNKCKGFGFVTMTNYDEAAMAIASLNGYRLG+RVL
Sbjct: 312 DESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL 371
Query: 356 QVSFKTSKQHKA 367
QVSFKT+K HK+
Sbjct: 372 QVSFKTNKAHKS 383
>gi|115511032 ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B) [Homo sapiens]
Length = 359
Score = 575 bits (1482), Expect = e-164
Identities = 294/367 (80%), Positives = 316/367 (86%), Gaps = 16/367 (4%)
Query: 9 MESQVGGGPAGPALPNGPLLGTN--------GATDDSKTNLIVNYLPQNMTQDEFKSLFG 60
ME+Q+ GP NGP N G T+DSKTNLIVNYLPQNMTQ+E KSLFG
Sbjct: 1 METQLSNGPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFG 60
Query: 61 SIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSA 120
SIG+IESCKLVRDKITGQSLGYGFVNY DP DA+KAINTLNGL+LQTKTIKVSYARPSSA
Sbjct: 61 SIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA 120
Query: 121 SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 180
SIRDANLYVSGLPKTM+QKE+EQLFSQYGRIITSRILVDQVTG+SRGVGFIRFDKRIEAE
Sbjct: 121 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAE 180
Query: 181 EAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLD 240
EAIKGLNGQKP GA EPITVKFANNPSQKT QA+L+ LYQS RRY GPL Q QRFRLD
Sbjct: 181 EAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLD 240
Query: 241 NLLNMAYGVKSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVL 300
NLLNMAYGVK RFSP+ IDGM+ LAG+ + G G GWCIFVYNL+P+ADES+L
Sbjct: 241 NLLNMAYGVK-------RFSPMTIDGMTSLAGINIP-GHPGTGWCIFVYNLAPDADESIL 292
Query: 301 WQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFK 360
WQ+FGPFGAVTNVKVIRDF TNKCKGFGFVTMTNYDEAAMAIASLNGYRLG+RVLQVSFK
Sbjct: 293 WQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 352
Query: 361 TSKQHKA 367
T+K HKA
Sbjct: 353 TNKTHKA 359
>gi|38201714 ELAV-like 1 [Homo sapiens]
Length = 326
Score = 462 bits (1189), Expect = e-130
Identities = 226/332 (68%), Positives = 268/332 (80%), Gaps = 21/332 (6%)
Query: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94
D +TNLIVNYLPQNMTQDE +SLF SIG++ES KL+RDK+ G SLGYGFVNY DA+
Sbjct: 16 DIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAE 75
Query: 95 KAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITS 154
+AINTLNGL+LQ+KTIKVSYARPSS I+DANLY+SGLP+TM+QK++E +FS++GRII S
Sbjct: 76 RAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINS 135
Query: 155 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQAL 214
R+LVDQ TG+SRGV FIRFDKR EAEEAI NG KP G++EPITVKFA NP+Q AL
Sbjct: 136 RVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNKNVAL 195
Query: 215 LTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKSPLSLIARFSPIAIDGMSGLAGVG 274
L+ LY S ARR+ GP+HHQ QRF RFSP+ +D MSGL+GV
Sbjct: 196 LSQLYHSPARRFGGPVHHQAQRF--------------------RFSPMGVDHMSGLSGVN 235
Query: 275 LSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTN 334
+ G A+ +GWCIF+YNL +ADE +LWQ+FGPFGAVTNVKVIRDF TNKCKGFGFVTMTN
Sbjct: 236 VPGNAS-SGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTN 294
Query: 335 YDEAAMAIASLNGYRLGERVLQVSFKTSKQHK 366
Y+EAAMAIASLNGYRLG+++LQVSFKT+K HK
Sbjct: 295 YEEAAMAIASLNGYRLGDKILQVSFKTNKSHK 326
Score = 54.7 bits (130), Expect = 1e-07
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 115 ARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 174
A I NL V+ LP+ M+Q E+ LFS G + +++++ D+V G S G GF+ +
Sbjct: 10 AEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYV 69
Query: 175 KRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQ 208
+AE AI LNG + ++ I V +A S+
Sbjct: 70 TAKDAERAINTLNGLRL--QSKTIKVSYARPSSE 101
>gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo
sapiens]
Length = 614
Score = 114 bits (284), Expect = 2e-25
Identities = 86/335 (25%), Positives = 153/335 (45%), Gaps = 68/335 (20%)
Query: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
N+ + L ++ F + G+I SCK+ D+ S G+GFV++ A +AINT
Sbjct: 100 NIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDE--HGSRGFGFVHFETHEAAQQAINT 157
Query: 100 LNGLKLQTKTIKVSY--------ARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRI 151
+NG+ L + + V + A + ++ N+YV LP + ++ ++ LFSQ+G++
Sbjct: 158 MNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKM 217
Query: 152 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTG 211
++ +++ D +G SR GF+ F+K EA++A+ +NG+ + +G
Sbjct: 218 LSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHMNGK------------------EVSG 258
Query: 212 QALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKSPLSLIARFSPIAIDGMSGLA 271
+ L YAG + +R L RF + D +
Sbjct: 259 RLL-----------YAGRAQKRVERQN---------------ELKRRFEQMKQDRLRRYQ 292
Query: 272 GVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVT 331
GV L +V NL D+ L + F P+G +T+ KV+ + KGFGFV
Sbjct: 293 GVNL-----------YVKNLDDSIDDDKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVC 339
Query: 332 MTNYDEAAMAIASLNGYRLGERVLQVSFKTSKQHK 366
++ +EA A+ +NG +G + L V+ K+ +
Sbjct: 340 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEER 374
Score = 81.3 bits (199), Expect = 1e-15
Identities = 44/151 (29%), Positives = 83/151 (54%), Gaps = 4/151 (2%)
Query: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
+L V L ++T+ F G I S ++ RD T +SLGY ++N+ P DA++A++T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 100 LNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRIL 157
+N L+ + I++ +++ P N+++ L ++ K + FS +G I++ ++
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVA 131
Query: 158 VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
D+ SRG GF+ F+ A++AI +NG
Sbjct: 132 CDE--HGSRGFGFVHFETHEAAQQAINTMNG 160
Score = 76.6 bits (187), Expect = 3e-14
Identities = 56/213 (26%), Positives = 103/213 (48%), Gaps = 28/213 (13%)
Query: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
TN+ V LP ++ + + LF G + S K++RD +G S +GFVN+ +A KA+
Sbjct: 191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVV 249
Query: 99 TLNGLKLQTKTIKVSYA------------------RPSSASIRDANLYVSGLPKTMSQKE 140
+NG ++ + + A + + NLYV L ++ +
Sbjct: 250 HMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDK 309
Query: 141 MEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITV 200
+ + FS YG I +++++ + G S+G GF+ F EA +A+ +NG+ + +P+ V
Sbjct: 310 LRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGR--IVGTKPLYV 365
Query: 201 KFANNPSQKTGQALLTHLYQ---SSARRYAGPL 230
A ++ +A+LT+ Y S+ R + PL
Sbjct: 366 ALAQRKEER--KAILTNQYMQRLSTMRTLSNPL 396
Score = 47.8 bits (112), Expect = 2e-05
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
IF+ NL D L+ F FG + + KV D + +GFGFV ++ A AI ++
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACD--EHGSRGFGFVHFETHEAAQQAINTM 158
Query: 346 NGYRLGERVLQVS-FKTSKQHKA 367
NG L +R + V FK+ ++ +A
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREA 181
>gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Homo
sapiens]
Length = 631
Score = 111 bits (278), Expect = 9e-25
Identities = 87/378 (23%), Positives = 172/378 (45%), Gaps = 66/378 (17%)
Query: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
+L V L ++T+ F G + S ++ RD IT +SLGY +VN+ P DA++A++T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 100 LNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRIL 157
+N ++ K I++ +++ PS N+++ L K++ K + FS +G I++ +++
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 158 VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-------------------QKPLGA---- 194
D+ S+G F+ F+ + A++AI+ +NG + LGA
Sbjct: 132 CDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 195 -------------------------AEPITVKFANNPSQKT-GQALLTHLYQSSARRYAG 228
+ ++VK +P+ K+ G +++ A +
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVE 249
Query: 229 PLHHQTQRFRLDNLLNMAYGVKSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFV 288
++ + ++ + V+ L +F + + +S GV L ++
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNL-----------YI 298
Query: 289 YNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGY 348
NL D+ L + F PFG++T+ KV+ + + KGFGFV ++ +EA A+ +NG
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 349 RLGERVLQVSFKTSKQHK 366
+G + L V+ K+ +
Sbjct: 357 IVGSKPLYVALAQRKEER 374
Score = 84.7 bits (208), Expect = 1e-16
Identities = 57/215 (26%), Positives = 102/215 (47%), Gaps = 28/215 (13%)
Query: 32 GATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPN 91
GA TN+ + + + + K LF G S K++RD G+S G+GFV+Y
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHE 242
Query: 92 DADKAINTLNGLKLQTKTIKVSYARPS------------------SASIRDANLYVSGLP 133
DA+KA+ +NG ++ K I V A+ + + NLY+ L
Sbjct: 243 DANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLD 302
Query: 134 KTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLG 193
T+ +++ + FS +G I +++++++ G S+G GF+ F EA +A+ +NG+ +
Sbjct: 303 DTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGR--IV 358
Query: 194 AAEPITVKFANNPSQKTGQALLTHLYQSSARRYAG 228
++P+ V A ++ HL +R AG
Sbjct: 359 GSKPLYVALAQRKEERK-----AHLTNQYMQRVAG 388
Score = 47.8 bits (112), Expect = 2e-05
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
+F+ NL D L+ F FG + + KV+ D N KG+ FV + A AI +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 346 NGYRLGERVLQVS-FKTSKQHKA 367
NG L +R + V FK+ K+ +A
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREA 181
>gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo
sapiens]
Length = 644
Score = 111 bits (278), Expect = 9e-25
Identities = 87/378 (23%), Positives = 172/378 (45%), Gaps = 66/378 (17%)
Query: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
+L V L ++T+ F G + S ++ RD IT +SLGY +VN+ P DA++A++T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 100 LNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRIL 157
+N ++ K I++ +++ PS N+++ L K++ K + FS +G I++ +++
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 158 VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-------------------QKPLGA---- 194
D+ S+G F+ F+ + A++AI+ +NG + LGA
Sbjct: 132 CDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 195 -------------------------AEPITVKFANNPSQKT-GQALLTHLYQSSARRYAG 228
+ ++VK +P+ K+ G +++ A +
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVE 249
Query: 229 PLHHQTQRFRLDNLLNMAYGVKSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFV 288
++ + ++ + V+ L +F + + +S GV L ++
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNL-----------YI 298
Query: 289 YNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGY 348
NL D+ L + F PFG++T+ KV+ + + KGFGFV ++ +EA A+ +NG
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 349 RLGERVLQVSFKTSKQHK 366
+G + L V+ K+ +
Sbjct: 357 IVGSKPLYVALAQRKEER 374
Score = 84.7 bits (208), Expect = 1e-16
Identities = 57/215 (26%), Positives = 102/215 (47%), Gaps = 28/215 (13%)
Query: 32 GATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPN 91
GA TN+ + + + + K LF G S K++RD G+S G+GFV+Y
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHE 242
Query: 92 DADKAINTLNGLKLQTKTIKVSYARPS------------------SASIRDANLYVSGLP 133
DA+KA+ +NG ++ K I V A+ + + NLY+ L
Sbjct: 243 DANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLD 302
Query: 134 KTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLG 193
T+ +++ + FS +G I +++++++ G S+G GF+ F EA +A+ +NG+ +
Sbjct: 303 DTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGR--IV 358
Query: 194 AAEPITVKFANNPSQKTGQALLTHLYQSSARRYAG 228
++P+ V A ++ HL +R AG
Sbjct: 359 GSKPLYVALAQRKEERK-----AHLTNQYMQRVAG 388
Score = 47.8 bits (112), Expect = 2e-05
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
+F+ NL D L+ F FG + + KV+ D N KG+ FV + A AI +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 346 NGYRLGERVLQVS-FKTSKQHKA 367
NG L +R + V FK+ K+ +A
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREA 181
>gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Homo
sapiens]
Length = 660
Score = 111 bits (278), Expect = 9e-25
Identities = 87/378 (23%), Positives = 172/378 (45%), Gaps = 66/378 (17%)
Query: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
+L V L ++T+ F G + S ++ RD IT +SLGY +VN+ P DA++A++T
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 100 LNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRIL 157
+N ++ K I++ +++ PS N+++ L K++ K + FS +G I++ +++
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 158 VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-------------------QKPLGA---- 194
D+ S+G F+ F+ + A++AI+ +NG + LGA
Sbjct: 132 CDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 195 -------------------------AEPITVKFANNPSQKT-GQALLTHLYQSSARRYAG 228
+ ++VK +P+ K+ G +++ A +
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVE 249
Query: 229 PLHHQTQRFRLDNLLNMAYGVKSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFV 288
++ + ++ + V+ L +F + + +S GV L ++
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNL-----------YI 298
Query: 289 YNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGY 348
NL D+ L + F PFG++T+ KV+ + + KGFGFV ++ +EA A+ +NG
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 349 RLGERVLQVSFKTSKQHK 366
+G + L V+ K+ +
Sbjct: 357 IVGSKPLYVALAQRKEER 374
Score = 84.7 bits (208), Expect = 1e-16
Identities = 57/215 (26%), Positives = 102/215 (47%), Gaps = 28/215 (13%)
Query: 32 GATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPN 91
GA TN+ + + + + K LF G S K++RD G+S G+GFV+Y
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHE 242
Query: 92 DADKAINTLNGLKLQTKTIKVSYARPS------------------SASIRDANLYVSGLP 133
DA+KA+ +NG ++ K I V A+ + + NLY+ L
Sbjct: 243 DANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLD 302
Query: 134 KTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLG 193
T+ +++ + FS +G I +++++++ G S+G GF+ F EA +A+ +NG+ +
Sbjct: 303 DTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGR--IV 358
Query: 194 AAEPITVKFANNPSQKTGQALLTHLYQSSARRYAG 228
++P+ V A ++ HL +R AG
Sbjct: 359 GSKPLYVALAQRKEERK-----AHLTNQYMQRVAG 388
Score = 47.8 bits (112), Expect = 2e-05
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
+F+ NL D L+ F FG + + KV+ D N KG+ FV + A AI +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKM 158
Query: 346 NGYRLGERVLQVS-FKTSKQHKA 367
NG L +R + V FK+ K+ +A
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREA 181
>gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
Length = 636
Score = 110 bits (274), Expect = 3e-24
Identities = 91/378 (24%), Positives = 166/378 (43%), Gaps = 66/378 (17%)
Query: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
+L V L ++T+ F G I S ++ RD IT +SLGY +VN+ P DA++A++T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 100 LNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRIL 157
+N ++ K +++ +++ PS N+++ L K++ K + FS +G I++ +++
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 158 VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-------------------QKPLGA-AEP 197
D+ S+G GF+ F+ + AE AI+ +NG + LGA A+
Sbjct: 132 CDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 198 ITVKFANNPSQKTGQALLTHLY-----------------QSSARRYAGPLHHQTQRFRLD 240
T + N + L L+ +S + H+ + +D
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 241 NLLNMAYG------------VKSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFV 288
+ V+ L +F + D ++ GV L +V
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNL-----------YV 298
Query: 289 YNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGY 348
NL D+ L + F PFG +T+ KV+ + + KGFGFV ++ +EA A+ +NG
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 349 RLGERVLQVSFKTSKQHK 366
+ + L V+ K+ +
Sbjct: 357 IVATKPLYVALAQRKEER 374
Score = 85.9 bits (211), Expect = 5e-17
Identities = 62/220 (28%), Positives = 107/220 (48%), Gaps = 28/220 (12%)
Query: 32 GATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPN 91
GA TN+ + ++M + K LFG G S K++ D+ +G+S G+GFV++
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHE 242
Query: 92 DADKAINTLNGLKLQTKTIKVSYARPS------------------SASIRDANLYVSGLP 133
DA KA++ +NG +L K I V A+ + NLYV L
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 134 KTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLG 193
+ + + + FS +G I +++++++ G S+G GF+ F EA +A+ +NG+ +
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGR--IV 358
Query: 194 AAEPITVKFANNPSQKTGQALLTHLY---QSSARRYAGPL 230
A +P+ V A ++ QA LT+ Y +S R P+
Sbjct: 359 ATKPLYVALAQRKEER--QAHLTNQYMQRMASVRAVPNPV 396
Score = 64.7 bits (156), Expect = 1e-10
Identities = 62/264 (23%), Positives = 119/264 (45%), Gaps = 26/264 (9%)
Query: 117 PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 176
PS+ S A+LYV L +++ + + FS G I++ R+ D +T S G ++ F +
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 177 IEAEEAIKGLNGQKPLGAAEPITVKFA-NNPSQK---TGQALLTHLYQSSARR-----YA 227
+AE A+ +N G +P+ + ++ +PS + G + +L +S + ++
Sbjct: 63 ADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 120
Query: 228 GPLHHQTQRFRLDNLLNMAYGV------KSPLSLIARFSPIAIDGMSGLAGVGLS----- 276
+ + + D + YG ++ I + + + ++ G S
Sbjct: 121 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 180
Query: 277 ---GGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMT 333
G A +++ N + D+ L LFG FG +VKV+ D + K KGFGFV+
Sbjct: 181 AELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFE 239
Query: 334 NYDEAAMAIASLNGYRLGERVLQV 357
+++A A+ +NG L + + V
Sbjct: 240 RHEDAQKAVDEMNGKELNGKQIYV 263
Score = 50.8 bits (120), Expect = 2e-06
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
IF+ NL D L+ F FG + + KV+ D N KG+GFV + A AI +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKM 158
Query: 346 NGYRLGERVLQVS-FKTSKQHKA 367
NG L +R + V FK+ K+ +A
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREA 181
>gi|4506447 RNA binding motif, single stranded interacting protein 1
isoform c [Homo sapiens]
Length = 403
Score = 110 bits (274), Expect = 3e-24
Identities = 73/219 (33%), Positives = 108/219 (49%), Gaps = 21/219 (9%)
Query: 4 QILGAMESQVGGGPAGPALPNGPLLGTNGATDD-------SKTNLIVNYLPQNMTQDEFK 56
Q L A +S V P P P+ N ++ SKTNL + LP + T +
Sbjct: 20 QYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLV 79
Query: 57 SLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYAR 116
L G I S K + DK T + GYGFV++ P A KA++ L +Q + K
Sbjct: 80 KLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQD 139
Query: 117 PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 176
P+ NLY+S LP +M ++E+E + +G++I++RIL D +G SRGVGF R +
Sbjct: 140 PT-------NLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMEST 191
Query: 177 IEAEEAIKGLNG---QKPLGAA---EPITVKFANNPSQK 209
+ E I NG + P G + EP+ KFA+ +K
Sbjct: 192 EKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKK 230
Score = 50.4 bits (119), Expect = 2e-06
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 261 PIAIDGMSGLAGVGLSGGAAGAGWC------IFVYNLSPEADESVLWQLFGPFGAVTNVK 314
P+A S + S ++ +GW +++ L P + L +L P+G + + K
Sbjct: 33 PMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTK 92
Query: 315 VIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
I D TTNKCKG+GFV + A A+++L
Sbjct: 93 AILDKTTNKCKGYGFVDFDSPAAAQKAVSAL 123
Score = 37.7 bits (86), Expect = 0.016
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
+++ NL DE L + PFG V + +++RD ++ +G GF M + ++ I
Sbjct: 143 LYISNLPLSMDEQELENMLKPFGQVISTRILRD-SSGTSRGVGFARMESTEKCEAVIGHF 201
Query: 346 NG 347
NG
Sbjct: 202 NG 203
>gi|8400718 RNA binding motif, single stranded interacting protein 1
isoform a [Homo sapiens]
Length = 406
Score = 110 bits (274), Expect = 3e-24
Identities = 73/219 (33%), Positives = 108/219 (49%), Gaps = 21/219 (9%)
Query: 4 QILGAMESQVGGGPAGPALPNGPLLGTNGATDD-------SKTNLIVNYLPQNMTQDEFK 56
Q L A +S V P P P+ N ++ SKTNL + LP + T +
Sbjct: 20 QYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLV 79
Query: 57 SLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYAR 116
L G I S K + DK T + GYGFV++ P A KA++ L +Q + K
Sbjct: 80 KLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQD 139
Query: 117 PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 176
P+ NLY+S LP +M ++E+E + +G++I++RIL D +G SRGVGF R +
Sbjct: 140 PT-------NLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMEST 191
Query: 177 IEAEEAIKGLNG---QKPLGAA---EPITVKFANNPSQK 209
+ E I NG + P G + EP+ KFA+ +K
Sbjct: 192 EKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKK 230
Score = 50.4 bits (119), Expect = 2e-06
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 261 PIAIDGMSGLAGVGLSGGAAGAGWC------IFVYNLSPEADESVLWQLFGPFGAVTNVK 314
P+A S + S ++ +GW +++ L P + L +L P+G + + K
Sbjct: 33 PMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTK 92
Query: 315 VIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
I D TTNKCKG+GFV + A A+++L
Sbjct: 93 AILDKTTNKCKGYGFVDFDSPAAAQKAVSAL 123
Score = 37.7 bits (86), Expect = 0.016
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
+++ NL DE L + PFG V + +++RD ++ +G GF M + ++ I
Sbjct: 143 LYISNLPLSMDEQELENMLKPFGQVISTRILRD-SSGTSRGVGFARMESTEKCEAVIGHF 201
Query: 346 NG 347
NG
Sbjct: 202 NG 203
>gi|51317355 RNA binding motif, single stranded interacting protein
3 isoform 1 [Homo sapiens]
Length = 437
Score = 105 bits (261), Expect = 8e-23
Identities = 69/201 (34%), Positives = 103/201 (51%), Gaps = 16/201 (7%)
Query: 17 PAGPALPNGPLLGTNGATDD--SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDK 74
P P+ + +N ++ + SKTNL + LP T + L G I S K + DK
Sbjct: 37 PPSPSTNSSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDK 96
Query: 75 ITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPK 134
T Q GYGFV++ P A KA+ +L +Q + K P+ NLY+S LP
Sbjct: 97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 149
Query: 135 TMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG---QKP 191
+M ++E+E + +G +I++RIL D GVSRGVGF R + + E I+ NG + P
Sbjct: 150 SMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTP 208
Query: 192 LG---AAEPITVKFANNPSQK 209
G +EP+ KFA+ +K
Sbjct: 209 PGIPAPSEPLLCKFADGGQKK 229
Score = 46.2 bits (108), Expect = 5e-05
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
+++ L P + L +L P+G + + K I D TN+CKG+GFV + A A+ASL
Sbjct: 63 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASL 122
Score = 36.6 bits (83), Expect = 0.037
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
+++ NL DE L + PFG V + +++RD +G GF M + ++ + I
Sbjct: 142 LYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGFARMESTEKCEVVIQHF 200
Query: 346 NG 347
NG
Sbjct: 201 NG 202
>gi|51317353 RNA binding motif, single stranded interacting protein
3 isoform 3 [Homo sapiens]
Length = 419
Score = 105 bits (261), Expect = 8e-23
Identities = 69/201 (34%), Positives = 103/201 (51%), Gaps = 16/201 (7%)
Query: 17 PAGPALPNGPLLGTNGATDD--SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDK 74
P P+ + +N ++ + SKTNL + LP T + L G I S K + DK
Sbjct: 36 PPSPSTNSSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDK 95
Query: 75 ITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPK 134
T Q GYGFV++ P A KA+ +L +Q + K P+ NLY+S LP
Sbjct: 96 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 148
Query: 135 TMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG---QKP 191
+M ++E+E + +G +I++RIL D GVSRGVGF R + + E I+ NG + P
Sbjct: 149 SMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTP 207
Query: 192 LG---AAEPITVKFANNPSQK 209
G +EP+ KFA+ +K
Sbjct: 208 PGIPAPSEPLLCKFADGGQKK 228
Score = 46.2 bits (108), Expect = 5e-05
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
+++ L P + L +L P+G + + K I D TN+CKG+GFV + A A+ASL
Sbjct: 62 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASL 121
Score = 36.6 bits (83), Expect = 0.037
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
+++ NL DE L + PFG V + +++RD +G GF M + ++ + I
Sbjct: 141 LYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGFARMESTEKCEVVIQHF 199
Query: 346 NG 347
NG
Sbjct: 200 NG 201
>gi|51317351 RNA binding motif, single stranded interacting protein
3 isoform 2 [Homo sapiens]
Length = 420
Score = 105 bits (261), Expect = 8e-23
Identities = 69/201 (34%), Positives = 103/201 (51%), Gaps = 16/201 (7%)
Query: 17 PAGPALPNGPLLGTNGATDD--SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDK 74
P P+ + +N ++ + SKTNL + LP T + L G I S K + DK
Sbjct: 37 PPSPSTNSSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDK 96
Query: 75 ITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPK 134
T Q GYGFV++ P A KA+ +L +Q + K P+ NLY+S LP
Sbjct: 97 NTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPI 149
Query: 135 TMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG---QKP 191
+M ++E+E + +G +I++RIL D GVSRGVGF R + + E I+ NG + P
Sbjct: 150 SMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTP 208
Query: 192 LG---AAEPITVKFANNPSQK 209
G +EP+ KFA+ +K
Sbjct: 209 PGIPAPSEPLLCKFADGGQKK 229
Score = 46.2 bits (108), Expect = 5e-05
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
+++ L P + L +L P+G + + K I D TN+CKG+GFV + A A+ASL
Sbjct: 63 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASL 122
Score = 36.6 bits (83), Expect = 0.037
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
+++ NL DE L + PFG V + +++RD +G GF M + ++ + I
Sbjct: 142 LYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGFARMESTEKCEVVIQHF 200
Query: 346 NG 347
NG
Sbjct: 201 NG 202
>gi|4506449 RNA binding motif, single stranded interacting protein 2
[Homo sapiens]
Length = 407
Score = 104 bits (259), Expect = 1e-22
Identities = 65/187 (34%), Positives = 97/187 (51%), Gaps = 14/187 (7%)
Query: 29 GTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYS 88
G+NG SKTNL + L T + L G I S K + DK T + GYGFV++
Sbjct: 46 GSNGNDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFD 105
Query: 89 DPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQY 148
P+ A KA+ L +Q + K P+ NLY+S LP +M ++E+E + +
Sbjct: 106 SPSAAQKAVTALKASGVQAQMAKQQEQDPT-------NLYISNLPLSMDEQELEGMLKPF 158
Query: 149 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG---QKPLGA---AEPITVKF 202
G++I++RIL D +G SRGVGF R + + E I NG + P G ++P+ KF
Sbjct: 159 GQVISTRILRD-TSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPPGVPAPSDPLLCKF 217
Query: 203 ANNPSQK 209
A+ +K
Sbjct: 218 ADGGPKK 224
Score = 49.7 bits (117), Expect = 4e-06
Identities = 28/96 (29%), Positives = 48/96 (50%)
Query: 250 KSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGA 309
K +SL + +P + + + G +G + +++ L P + L +L P+G
Sbjct: 22 KPYVSLAQQMAPPSPSNSTPNSSSGSNGNDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGK 81
Query: 310 VTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
+ + K I D TTNKCKG+GFV + A A+ +L
Sbjct: 82 IVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 117
Score = 38.1 bits (87), Expect = 0.013
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
+++ NL DE L + PFG V + +++RD T+ +G GF M + ++ I
Sbjct: 137 LYISNLPLSMDEQELEGMLKPFGQVISTRILRD-TSGTSRGVGFARMESTEKCEAIITHF 195
Query: 346 NG 347
NG
Sbjct: 196 NG 197
>gi|4507499 TIA-1 related protein isoform 1 [Homo sapiens]
Length = 375
Score = 99.0 bits (245), Expect = 6e-21
Identities = 79/326 (24%), Positives = 145/326 (44%), Gaps = 63/326 (19%)
Query: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94
D L V L +++T+ LF IG +SCK++ + + Y FV + + DA
Sbjct: 5 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAA 62
Query: 95 KAINTLNGLKLQTKTIKVSYARPSSASIRDAN----LYVSGLPKTMSQKEMEQLFSQYGR 150
A+ +NG K+ K +KV++A S+ +D + ++V L ++ ++++ F+ +G+
Sbjct: 63 AALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGK 122
Query: 151 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKT 210
I +R++ D TG S+G GF+ F +++AE AI + GQ G P+ K+
Sbjct: 123 ISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKS 182
Query: 211 GQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKSPLSLIARFSPIAIDGMSGL 270
Q + T++ R ++++N + SP + IA SGL
Sbjct: 183 TQ------------------ENNTKQLRFEDVVNQS----SPKNCTVYCGGIA----SGL 216
Query: 271 AGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFV 330
+ ++ Q F PFG + ++V + KG+ FV
Sbjct: 217 T-------------------------DQLMRQTFSPFGQIMEIRVFPE------KGYSFV 245
Query: 331 TMTNYDEAAMAIASLNGYRLGERVLQ 356
+ ++ AA AI S+NG + V++
Sbjct: 246 RFSTHESAAHAIVSVNGTTIEGHVVK 271
Score = 60.5 bits (145), Expect = 2e-09
Identities = 29/78 (37%), Positives = 46/78 (58%)
Query: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
+FV +LSPE + F PFG +++ +V++D T K KG+GFV+ N +A AI +
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 346 NGYRLGERVLQVSFKTSK 363
G LG R ++ ++ T K
Sbjct: 159 GGQWLGGRQIRTNWATRK 176
Score = 41.6 bits (96), Expect = 0.001
Identities = 23/77 (29%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
++V NLS + E ++ QLF G + K+I + T+N + FV + +AA A+A++
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSN--DPYCFVEFYEHRDAAAALAAM 68
Query: 346 NGYRLGERVLQVSFKTS 362
NG ++ + ++V++ T+
Sbjct: 69 NGRKILGKEVKVNWATT 85
Score = 30.0 bits (66), Expect = 3.4
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 46 LPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKL 105
+ +T + F G I ++ +K GY FV +S A AI ++NG +
Sbjct: 212 IASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVSVNGTTI 265
Query: 106 QTKTIKVSYARPS 118
+ +K + + S
Sbjct: 266 EGHVVKCYWGKES 278
>gi|188219593 TIA1 protein isoform 1 [Homo sapiens]
Length = 375
Score = 97.8 bits (242), Expect = 1e-20
Identities = 81/326 (24%), Positives = 144/326 (44%), Gaps = 63/326 (19%)
Query: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94
D+ L V L +++T+ LF IG ++CK++ D T + Y FV + + A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAA 60
Query: 95 KAINTLNGLKLQTKTIKVSYARPSSASIRDAN----LYVSGLPKTMSQKEMEQLFSQYGR 150
A+ +NG K+ K +KV++A S+ +D + ++V L ++ ++++ F+ +GR
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGR 120
Query: 151 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKT 210
I +R++ D TG S+G GF+ F + +AE AI+ + GQ G P+ K+
Sbjct: 121 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKS 180
Query: 211 GQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKSPLSLIARFSPIAIDGMSGL 270
Y+S+ T++ D ++N + SP G
Sbjct: 181 -------TYESN-----------TKQLSYDEVVNQS-------------SPSNCTVYCGG 209
Query: 271 AGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFV 330
GL+ E ++ Q F PFG + ++V D KG+ FV
Sbjct: 210 VTSGLT--------------------EQLMRQTFSPFGQIMEIRVFPD------KGYSFV 243
Query: 331 TMTNYDEAAMAIASLNGYRLGERVLQ 356
+++ AA AI S+NG + V++
Sbjct: 244 RFNSHESAAHAIVSVNGTTIEGHVVK 269
Score = 60.1 bits (144), Expect = 3e-09
Identities = 29/78 (37%), Positives = 46/78 (58%)
Query: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
+FV +LSPE + F PFG +++ +V++D T K KG+GFV+ N +A AI +
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 346 NGYRLGERVLQVSFKTSK 363
G LG R ++ ++ T K
Sbjct: 157 GGQWLGGRQIRTNWATRK 174
Score = 42.4 bits (98), Expect = 7e-04
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
++V NLS + E+++ QLF G N K+I D N + FV + AA A+A++
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFHEHRHAAAALAAM 66
Query: 346 NGYRLGERVLQVSFKTS 362
NG ++ + ++V++ T+
Sbjct: 67 NGRKIMGKEVKVNWATT 83
Score = 30.0 bits (66), Expect = 3.4
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 50 MTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKT 109
+T+ + F G I ++ DK GY FV ++ A AI ++NG ++
Sbjct: 214 LTEQLMRQTFSPFGQIMEIRVFPDK------GYSFVRFNSHESAAHAIVSVNGTTIEGHV 267
Query: 110 IKVSYAR 116
+K + +
Sbjct: 268 VKCYWGK 274
>gi|77695912 TIA-1 related protein isoform 2 [Homo sapiens]
Length = 392
Score = 94.4 bits (233), Expect = 1e-19
Identities = 81/341 (23%), Positives = 148/341 (43%), Gaps = 76/341 (22%)
Query: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRD----KITGQSLG--------- 81
D L V L +++T+ LF IG +SCK++ + + S+G
Sbjct: 5 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSN 64
Query: 82 --YGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDAN----LYVSGLPKT 135
Y FV + + DA A+ +NG K+ K +KV++A S+ +D + ++V L
Sbjct: 65 DPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPE 124
Query: 136 MSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAA 195
++ ++++ F+ +G+I +R++ D TG S+G GF+ F +++AE AI + GQ G
Sbjct: 125 ITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 184
Query: 196 EPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKSPLSL 255
P+ K+ Q + T++ R ++++N + SP +
Sbjct: 185 IRTNWATRKPPAPKSTQ------------------ENNTKQLRFEDVVNQS----SPKNC 222
Query: 256 IARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKV 315
IA SGL + ++ Q F PFG + ++V
Sbjct: 223 TVYCGGIA----SGLT-------------------------DQLMRQTFSPFGQIMEIRV 253
Query: 316 IRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQ 356
+ KG+ FV + ++ AA AI S+NG + V++
Sbjct: 254 FPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 288
Score = 60.5 bits (145), Expect = 2e-09
Identities = 29/78 (37%), Positives = 46/78 (58%)
Query: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
+FV +LSPE + F PFG +++ +V++D T K KG+GFV+ N +A AI +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 346 NGYRLGERVLQVSFKTSK 363
G LG R ++ ++ T K
Sbjct: 176 GGQWLGGRQIRTNWATRK 193
Score = 33.5 bits (75), Expect = 0.31
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 15/92 (16%)
Query: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRD----FTTNKCKGFG-----------FV 330
++V NLS + E ++ QLF G + K+I + N GF FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 331 TMTNYDEAAMAIASLNGYRLGERVLQVSFKTS 362
+ +AA A+A++NG ++ + ++V++ T+
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATT 102
Score = 30.0 bits (66), Expect = 3.4
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 46 LPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKL 105
+ +T + F G I ++ +K GY FV +S A AI ++NG +
Sbjct: 229 IASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVSVNGTTI 282
Query: 106 QTKTIKVSYARPS 118
+ +K + + S
Sbjct: 283 EGHVVKCYWGKES 295
>gi|188219591 TIA1 protein isoform 2 [Homo sapiens]
Length = 386
Score = 93.6 bits (231), Expect = 3e-19
Identities = 81/337 (24%), Positives = 144/337 (42%), Gaps = 74/337 (21%)
Query: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94
D+ L V L +++T+ LF IG ++CK++ D T + Y FV + + A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAA 60
Query: 95 KAINTLNGLKLQTKTIKVSYARPSSASIRDAN---------------LYVSGLPKTMSQK 139
A+ +NG K+ K +KV++A S+ +D + ++V L ++ +
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE 120
Query: 140 EMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPIT 199
+++ F+ +GRI +R++ D TG S+G GF+ F + +AE AI+ + GQ G
Sbjct: 121 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 180
Query: 200 VKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKSPLSLIARF 259
P+ K+ Y+S+ T++ D ++N +
Sbjct: 181 WATRKPPAPKS-------TYESN-----------TKQLSYDEVVNQS------------- 209
Query: 260 SPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDF 319
SP G GL+ E ++ Q F PFG + ++V D
Sbjct: 210 SPSNCTVYCGGVTSGLT--------------------EQLMRQTFSPFGQIMEIRVFPD- 248
Query: 320 TTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQ 356
KG+ FV +++ AA AI S+NG + V++
Sbjct: 249 -----KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVK 280
Score = 60.1 bits (144), Expect = 3e-09
Identities = 29/78 (37%), Positives = 46/78 (58%)
Query: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
+FV +LSPE + F PFG +++ +V++D T K KG+GFV+ N +A AI +
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 346 NGYRLGERVLQVSFKTSK 363
G LG R ++ ++ T K
Sbjct: 168 GGQWLGGRQIRTNWATRK 185
Score = 42.4 bits (98), Expect = 7e-04
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
++V NLS + E+++ QLF G N K+I D N + FV + AA A+A++
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFHEHRHAAAALAAM 66
Query: 346 NGYRLGERVLQVSFKTS 362
NG ++ + ++V++ T+
Sbjct: 67 NGRKIMGKEVKVNWATT 83
Score = 30.0 bits (66), Expect = 3.4
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 50 MTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKT 109
+T+ + F G I ++ DK GY FV ++ A AI ++NG ++
Sbjct: 225 LTEQLMRQTFSPFGQIMEIRVFPDK------GYSFVRFNSHESAAHAIVSVNGTTIEGHV 278
Query: 110 IKVSYAR 116
+K + +
Sbjct: 279 VKCYWGK 285
>gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo
sapiens]
Length = 370
Score = 90.5 bits (223), Expect = 2e-18
Identities = 77/329 (23%), Positives = 139/329 (42%), Gaps = 72/329 (21%)
Query: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
N+ + L +++ F + G I S K++ D S GY FV++ + + AD+AI
Sbjct: 99 NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDD--QGSKGYAFVHFQNQSAADRAIEE 156
Query: 100 LNGLKLQTKTIKVSYARPSSASIRDA----------NLYVSGLPKTMSQKEMEQLFSQYG 149
+NG L K KV R + R+A N+Y+ M + ++ +FS+YG
Sbjct: 157 MNGKLL--KGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYG 214
Query: 150 RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQK 209
+ ++ +++ D +G S+G GF+ FD A++A++ +NG+
Sbjct: 215 KTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEMNGR------------------DI 255
Query: 210 TGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKSPLSLIARFSPIAIDGMSG 269
GQ + Q R A L F + + + G
Sbjct: 256 NGQLIFVGRAQKKVERQA--------------------------ELKQMFEQLKRERIRG 289
Query: 270 LAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGF 329
GV L ++ NL D+ L F FG+++ VKV+++ + KGFG
Sbjct: 290 CQGVKL-----------YIKNLDDTIDDEKLRNEFSSFGSISRVKVMQE--EGQSKGFGL 336
Query: 330 VTMTNYDEAAMAIASLNGYRLGERVLQVS 358
+ ++ ++A A+ +NG LG + L ++
Sbjct: 337 ICFSSPEDATKAMTEMNGRILGSKPLSIA 365
Score = 86.7 bits (213), Expect = 3e-17
Identities = 51/181 (28%), Positives = 101/181 (55%), Gaps = 5/181 (2%)
Query: 31 NGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDP 90
N A +L V L ++T+D F ++G + S ++ RD++T +SLGY +VN+
Sbjct: 2 NVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQL 61
Query: 91 NDADKAINTLNGLKLQTKTIKVSYARPSSASIRD--ANLYVSGLPKTMSQKEMEQLFSQY 148
DA KA++T+N ++ K+I++ +++ + R N+++ L K++ K + + FS +
Sbjct: 62 ADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAF 121
Query: 149 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQ 208
G+I++S+++ D S+G F+ F + A+ AI+ +NG K L + +F N +
Sbjct: 122 GKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEMNG-KLLKGCKVFVGRFKNRKDR 178
Query: 209 K 209
+
Sbjct: 179 E 179
Score = 67.0 bits (162), Expect = 3e-11
Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 25/179 (13%)
Query: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
TN+ + +M + K +F G S K++ D +G+S G+GFV++ A KA+
Sbjct: 190 TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVE 248
Query: 99 TLNGLKLQTKTIKVSYA------------------RPSSASIRDANLYVSGLPKTMSQKE 140
+NG + + I V A R + LY+ L T+ ++
Sbjct: 249 EMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEK 308
Query: 141 MEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ----KPLGAA 195
+ FS +G I SR+ V Q G S+G G I F +A +A+ +NG+ KPL A
Sbjct: 309 LRNEFSSFGSI--SRVKVMQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIA 365
Score = 47.8 bits (112), Expect = 2e-05
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100
L + L + ++ ++ F S G I K+++++ GQS G+G + +S P DA KA+ +
Sbjct: 295 LYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEE--GQSKGFGLICFSSPEDATKAMTEM 352
Query: 101 NGLKLQTKTIKVSYAR 116
NG L +K + ++ A+
Sbjct: 353 NGRILGSKPLSIALAQ 368
Score = 43.5 bits (101), Expect = 3e-04
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
+F+ NL D L++ F FG + + KV+ D KG+ FV N A AI +
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD--DQGSKGYAFVHFQNQSAADRAIEEM 157
Query: 346 NGYRL-GERVLQVSFKTSKQHKA 367
NG L G +V FK K +A
Sbjct: 158 NGKLLKGCKVFVGRFKNRKDREA 180
>gi|109948285 poly(A) binding protein, cytoplasmic 1-like 2B [Homo
sapiens]
Length = 200
Score = 90.1 bits (222), Expect = 3e-18
Identities = 50/151 (33%), Positives = 84/151 (55%), Gaps = 4/151 (2%)
Query: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
+L V L +T+ F G I S ++ RDKIT +SLGY +VNY P DA +A+ T
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 100 LNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRIL 157
LN ++ + +++ +++ PS N+++ L KT+ K + +FS +G I++ ++
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
Query: 158 VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
D+ +G GF+ F K+ AE AI +NG
Sbjct: 123 CDEKG--PKGYGFVHFQKQESAERAIDVMNG 151
Score = 44.3 bits (103), Expect = 2e-04
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
+F+ NL D L+ +F FG + + KV D KG+GFV + A AI +
Sbjct: 92 VFIKNLGKTIDNKALYNIFSAFGNILSCKVACD--EKGPKGYGFVHFQKQESAERAIDVM 149
Query: 346 NGYRLGERVLQVS-FKTSKQHKA 367
NG L R + V FK+ K+ +A
Sbjct: 150 NGMFLNYRKIFVGRFKSHKEREA 172
Score = 42.7 bits (99), Expect = 5e-04
Identities = 18/61 (29%), Positives = 36/61 (59%)
Query: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
++V +L PE E++L++ F P G + ++++ RD T + G+ +V +A A+ +L
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 346 N 346
N
Sbjct: 64 N 64
Score = 42.4 bits (98), Expect = 7e-04
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
N+ + L + + ++F + G+I SCK+ D+ + GYGFV++ A++AI+
Sbjct: 91 NVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPK--GYGFVHFQKQESAERAIDV 148
Query: 100 LNGLKLQTKTIKV 112
+NG+ L + I V
Sbjct: 149 MNGMFLNYRKIFV 161
>gi|61175237 poly(A) binding protein, cytoplasmic 1-like 2A [Homo
sapiens]
Length = 200
Score = 90.1 bits (222), Expect = 3e-18
Identities = 50/151 (33%), Positives = 84/151 (55%), Gaps = 4/151 (2%)
Query: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
+L V L +T+ F G I S ++ RDKIT +SLGY +VNY P DA +A+ T
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 100 LNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRIL 157
LN ++ + +++ +++ PS N+++ L KT+ K + +FS +G I++ ++
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
Query: 158 VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
D+ +G GF+ F K+ AE AI +NG
Sbjct: 123 CDEKG--PKGYGFVHFQKQESAERAIDVMNG 151
Score = 44.3 bits (103), Expect = 2e-04
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
+F+ NL D L+ +F FG + + KV D KG+GFV + A AI +
Sbjct: 92 VFIKNLGKTIDNKALYNIFSAFGNILSCKVACD--EKGPKGYGFVHFQKQESAERAIDVM 149
Query: 346 NGYRLGERVLQVS-FKTSKQHKA 367
NG L R + V FK+ K+ +A
Sbjct: 150 NGMFLNYRKIFVGRFKSHKEREA 172
Score = 42.7 bits (99), Expect = 5e-04
Identities = 18/61 (29%), Positives = 36/61 (59%)
Query: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
++V +L PE E++L++ F P G + ++++ RD T + G+ +V +A A+ +L
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 346 N 346
N
Sbjct: 64 N 64
Score = 42.4 bits (98), Expect = 7e-04
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
N+ + L + + ++F + G+I SCK+ D+ + GYGFV++ A++AI+
Sbjct: 91 NVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPK--GYGFVHFQKQESAERAIDV 148
Query: 100 LNGLKLQTKTIKV 112
+NG+ L + I V
Sbjct: 149 MNGMFLNYRKIFV 161
>gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo
sapiens]
Length = 485
Score = 87.4 bits (215), Expect = 2e-17
Identities = 63/211 (29%), Positives = 102/211 (48%), Gaps = 10/211 (4%)
Query: 4 QILGAMESQVGGGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIG 63
Q+L S VG +GP P G +G D L V +P+++ + + K LF G
Sbjct: 15 QLLQPRPSPVGS--SGPEPPGGQ---PDGMKDLDAIKLFVGQIPRHLDEKDLKPLFEQFG 69
Query: 64 DIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKL---QTKTIKVSYARPSSA 120
I +++D TG G F+ Y + A KA L+ K + I+V A S
Sbjct: 70 RIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESR 129
Query: 121 SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 180
RD L+V L K S++++ +LF +G +I ++ G S+G F++F EA+
Sbjct: 130 GGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKGCAFVKFSSHTEAQ 188
Query: 181 EAIKGLNGQKPL-GAAEPITVKFANNPSQKT 210
AI L+G + + GA+ + VKFA+ ++T
Sbjct: 189 AAIHALHGSQTMPGASSSLVVKFADTDKERT 219
Score = 74.3 bits (181), Expect = 2e-13
Identities = 92/363 (25%), Positives = 147/363 (40%), Gaps = 59/363 (16%)
Query: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100
L V L + ++++ LF G I+ C ++R G S G FV +S +A AI+ L
Sbjct: 136 LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHAL 194
Query: 101 NGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITS------ 154
+G S P ++S + +T+ + M+Q+ Q G + S
Sbjct: 195 HG----------SQTMPGASSSLVVKFADTDKERTL--RRMQQMVGQLGILTPSLTLPFS 242
Query: 155 ------RILVDQVTGV--------SRGVGFIRFDKRIEAEEAIKGLNG----------QK 190
+ L+ Q T V S GV F + ++ GL
Sbjct: 243 PYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLHSP 302
Query: 191 PL-------GAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLL 243
PL G PIT FA G L +Y + G + + Q + L
Sbjct: 303 PLLGTTAVPGLVAPITNGFAGVVPFPGGHPALETVYAN------GLVPYPAQSPTVAETL 356
Query: 244 NMAY-GVKSPLSLI--ARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVL 300
+ A+ GV+ ++ A +PIA + G +F+Y+L E ++ L
Sbjct: 357 HPAFSGVQQYTAMYPTAAITPIAHSVPQPPPLLQQQQREGPEGCNLFIYHLPQEFGDTEL 416
Query: 301 WQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFK 360
Q+F PFG + + KV D TN+ K FGFV+ N A AI ++NG+++G + L+V K
Sbjct: 417 TQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLK 476
Query: 361 TSK 363
K
Sbjct: 477 RPK 479
Score = 60.8 bits (146), Expect = 2e-09
Identities = 32/92 (34%), Positives = 46/92 (50%)
Query: 26 PLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFV 85
PLL NL + +LPQ E +F G+I S K+ D+ T QS +GFV
Sbjct: 387 PLLQQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFV 446
Query: 86 NYSDPNDADKAINTLNGLKLQTKTIKVSYARP 117
++ +P A AI +NG ++ K +KV RP
Sbjct: 447 SFDNPASAQAAIQAMNGFQIGMKRLKVQLKRP 478
Score = 32.7 bits (73), Expect = 0.53
Identities = 20/61 (32%), Positives = 29/61 (47%)
Query: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
+FV + DE L LF FG + + V++D T KG F+T D A A +L
Sbjct: 47 LFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTAL 106
Query: 346 N 346
+
Sbjct: 107 H 107
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 86.3 bits (212), Expect = 4e-17
Identities = 55/169 (32%), Positives = 89/169 (52%), Gaps = 4/169 (2%)
Query: 43 VNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNG 102
V L + +++ LF G + + + +D++TGQ GYGFV + DAD AI +N
Sbjct: 17 VGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNM 76
Query: 103 LKLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMSQKEMEQLFSQYGRII-TSRILVDQ 160
+KL K I+V+ A + ++ AN+++ L + +K + FS +G I+ T +I+ D
Sbjct: 77 IKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDP 136
Query: 161 VTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQK 209
TG S+G FI F ++ AI+ +NGQ PITV +A K
Sbjct: 137 DTGNSKGYAFINFASFDASDAAIEAMNGQYLCN--RPITVSYAFKKDSK 183
Score = 60.5 bits (145), Expect = 2e-09
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 286 IFVYNLSPEADESVLWQLFGPFGAVTNV-KVIRDFTTNKCKGFGFVTMTNYDEAAMAIAS 344
IF+ NL PE DE +L+ F FG + K++RD T KG+ F+ ++D + AI +
Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 161
Query: 345 LNGYRLGERVLQVSFKTSKQHK 366
+NG L R + VS+ K K
Sbjct: 162 MNGQYLCNRPITVSYAFKKDSK 183
Score = 53.9 bits (128), Expect = 2e-07
Identities = 32/97 (32%), Positives = 52/97 (53%)
Query: 115 ARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 174
A P S +DA +YV GL + +S+ + +LF Q G ++ + + D+VTG +G GF+ F
Sbjct: 3 AGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFL 62
Query: 175 KRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTG 211
+A+ AIK +N K G + A+N + G
Sbjct: 63 SEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVG 99
Score = 44.7 bits (104), Expect = 1e-04
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
++V L + E +LW+LF G V N + +D T + +G+GFV + ++A AI +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 346 NGYRLGERVLQVSFKTSKQHK 366
N +L + ++V+ K S +K
Sbjct: 75 NMIKLYGKPIRVN-KASAHNK 94
>gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo
sapiens]
Length = 448
Score = 85.1 bits (209), Expect = 9e-17
Identities = 95/397 (23%), Positives = 161/397 (40%), Gaps = 72/397 (18%)
Query: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94
D L + +P+N+ + + K LF G I +++D+ TG G F+ Y + A
Sbjct: 50 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESAL 109
Query: 95 KAINTLNGLKLQTKTIKVSYARPSSASIR--DANLYVSGLPKTMSQKEMEQLFSQYGRII 152
KA + L+ K + +P+ + R D L+V L K S+ ++ +LF +G I
Sbjct: 110 KAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLNKQQSEDDVRRLFEAFGNIE 169
Query: 153 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQKT- 210
IL G S+G F+++ EA+ AI L+G + + GA+ + VKFA+ ++T
Sbjct: 170 ECTILRGP-DGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTM 228
Query: 211 --------------------------GQALLTH---LYQSSAR-RYAGPL----HHQTQR 236
QAL+ L S A+ Y P+ Q Q+
Sbjct: 229 RRMQQMAGQMGMFNPMAIPFGAYGAYAQALMQQQAALMASVAQGGYLNPMAAFAAAQMQQ 288
Query: 237 FRLDNLLNMAYGVKSPLS------------LIARFSPIAIDGMSGLAGVGLSGGAAGAGW 284
N+ +A +P S + + SPI ++G +GL AA A
Sbjct: 289 MAALNMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEA-- 346
Query: 285 CIFVYNLSPEADESV------------LWQLFGP------FGAVTNVKVIRDFTTNKCKG 326
+F + P +S + Q GP +G ++ + +
Sbjct: 347 -VFANGIHPYPAQSPTAADPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQQR 405
Query: 327 FGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSK 363
GFV+ N A AI ++NG+++G + L+V K K
Sbjct: 406 EGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPK 442
Score = 56.2 bits (134), Expect = 4e-08
Identities = 37/126 (29%), Positives = 68/126 (53%), Gaps = 10/126 (7%)
Query: 93 ADKAINTLNGLKLQTKT------IKVSYARPSSASIRDAN---LYVSGLPKTMSQKEMEQ 143
AD A + NGL + + S PS+ ++D + L++ +P+ + +K+++
Sbjct: 13 ADNASLSTNGLGSSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKP 72
Query: 144 LFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKF 202
LF ++G+I +L D+ TG+ +G F+ + +R A +A L+ QK L G PI VK
Sbjct: 73 LFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKP 132
Query: 203 ANNPSQ 208
A++ S+
Sbjct: 133 ADSESR 138
Score = 35.8 bits (81), Expect = 0.062
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 83 GFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSAS 121
GFV++ +P A AI +NG ++ K +KV RP A+
Sbjct: 407 GFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDAN 445
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,015,763
Number of Sequences: 37866
Number of extensions: 553325
Number of successful extensions: 3131
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 82
Number of HSP's that attempted gapping in prelim test: 1757
Number of HSP's gapped (non-prelim): 1050
length of query: 367
length of database: 18,247,518
effective HSP length: 104
effective length of query: 263
effective length of database: 14,309,454
effective search space: 3763386402
effective search space used: 3763386402
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.