Guide to the Human Genome
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Name: TOM1 Sequence: fasta or formatted (492aa) NCBI GI: 4885637
Description:

target of myb1 isoform 1

Referenced in:

Lysosomes and Related Organelles

Other entries for this name:
alt prot [460aa] target of myb1 isoform 3
alt prot [447aa] target of myb1 isoform 4
alt prot [493aa] target of myb1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         41           2
 C cysteine            1.0          5           1
 D aspartate           6.9         34           3
 E glutamate           8.9         44           2
 F phenylalanine       3.3         16           1
 G glycine             6.1         30           1
 H histidine           1.4          7           1
 I isoleucine          3.9         19           2
 K lysine              3.9         19           2
 L leucine            10.8         53           2
 M methionine          2.8         14           1
 N asparagine          4.3         21           2
 P proline             7.1         35           2
 Q glutamine           5.5         27           2
 R arginine            5.3         26           2
 S serine              7.5         37           3
 T threonine           6.1         30           2
 V valine              5.9         29           2
 W tryptophan          0.6          3           1
 Y tyrosine            0.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   target of myb1 isoform 1 
TOM1                  0.994   target of myb1 isoform 2 
TOM1                  0.923   target of myb1 isoform 3 
TOM1                  0.881   target of myb1 isoform 4 
TOM1L2                0.603   target of myb1-like 2 isoform 3 
TOM1L2                0.487   target of myb1-like 2 isoform 1 
TOM1L1                0.220   target of myb1-like 1 
GGA3                  0.088   ADP-ribosylation factor binding protein 3 isoform lo...
STAM                  0.085   signal transducing adaptor molecule 1 
STAM2                 0.080   signal transducing adaptor molecule 2 
GGA1                  0.078   golgi associated, gamma adaptin ear containing, ARF b...
GGA1                  0.070   golgi associated, gamma adaptin ear containing, ARF ...
HGS                   0.064   hepatocyte growth factor-regulated tyrosine kinase su...
GGA2                  0.060   ADP-ribosylation factor binding protein 2 
GGA3                  0.047   ADP-ribosylation factor binding protein 3 isoform sh...
CHMP4B                0.012   chromatin modifying protein 4B 
LOC653061             0.011   PREDICTED: similar to Golgin subfamily A member 8-l...
TCHHL1                0.011   trichohyalin-like 1 
LOC653125             0.009   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728498             0.009   PREDICTED: similar to Golgin subfamily A member 8-l...
MKL2                  0.009   megakaryoblastic leukemia 2 protein 
CHGA                  0.009   chromogranin A precursor 
LOC653061             0.009   PREDICTED: similar to Golgin subfamily A member 8-l...
CASZ1                 0.009   castor homolog 1, zinc finger isoform a 
KIAA1217              0.009   sickle tail isoform 3 
KIAA1217              0.009   sickle tail isoform 2 
KIAA1217              0.009   sickle tail isoform 1 
USP34                 0.009   ubiquitin specific protease 34 
STAP1                 0.009   signal transducing adaptor family member 1 
GOLGA1                0.008   golgin 97 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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