Guide to the Human Genome
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Name: VTCN1 Sequence: fasta or formatted (282aa) NCBI GI: 99028881
Description:

V-set domain containing T cell activation inhibitor 1

Referenced in:

Butyrophilin Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         21           1
 C cysteine            1.8          5           1
 D aspartate           3.9         11           1
 E glutamate           6.4         18           1
 F phenylalanine       4.3         12           2
 G glycine             6.7         19           1
 H histidine           1.1          3           1
 I isoleucine          9.2         26           4
 K lysine              5.3         15           1
 L leucine             9.2         26           2
 M methionine          2.1          6           1
 N asparagine          5.7         16           2
 P proline             2.5          7           1
 Q glutamine           3.2          9           1
 R arginine            2.8          8           2
 S serine             10.3         29           2
 T threonine           6.0         17           2
 V valine              7.8         22           2
 W tryptophan          1.8          5           1
 Y tyrosine            2.5          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   V-set domain containing T cell activation inhibitor ... 
CD276                 0.126   CD276 antigen isoform b 
CD276                 0.125   CD276 antigen isoform a 
HHLA2                 0.117   HERV-H LTR-associating 2 
BTNL3                 0.115   butyrophilin-like 3 
BTN3A1                0.109   butyrophilin, subfamily 3, member A1 isoform b [Homo...
BTN3A1                0.109   butyrophilin, subfamily 3, member A1 isoform d [Hom...
BTN3A1                0.109   butyrophilin, subfamily 3, member A1 isoform a [Homo...
BTN1A1                0.109   butyrophilin, subfamily 1, member A1 
BTNL8                 0.108   butyrophilin-like 8 isoform 4 precursor 
BTNL8                 0.108   butyrophilin-like 8 isoform 2 precursor 
BTNL8                 0.108   butyrophilin-like 8 isoform 1 precursor 
BTN3A3                0.108   butyrophilin, subfamily 3, member A3 isoform a 
BTN3A3                0.108   butyrophilin, subfamily 3, member A3 isoform b [Homo...
BTN3A2                0.106   butyrophilin, subfamily 3, member A2 precursor [Homo...
BTN2A1                0.094   butyrophilin, subfamily 2, member A1 isoform 1 precur...
BTN2A1                0.094   butyrophilin, subfamily 2, member A1 isoform 2 precu...
BTNL2                 0.083   butyrophilin-like 2 
BTN2A2                0.083   butyrophilin, subfamily 2, member A2 isoform a 
CD274                 0.075   CD274 molecule 
BTN3A1                0.075   butyrophilin, subfamily 3, member A1 isoform c [Hom...
BTNL9                 0.075   butyrophilin-like 9 
MOG                   0.064   myelin oligodendrocyte glycoprotein isoform beta4 pr...
MOG                   0.064   myelin oligodendrocyte glycoprotein isoform alpha4 p...
MOG                   0.064   myelin oligodendrocyte glycoprotein isoform beta5 pr...
MOG                   0.064   myelin oligodendrocyte glycoprotein isoform beta2 pr...
MOG                   0.064   myelin oligodendrocyte glycoprotein isoform alpha3 p...
MOG                   0.064   myelin oligodendrocyte glycoprotein isoform beta3 pr...
MOG                   0.064   myelin oligodendrocyte glycoprotein isoform beta1 pr...
MOG                   0.064   myelin oligodendrocyte glycoprotein isoform alpha2 p...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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