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Search of human proteins with 4826774
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4826774 ISG15 ubiquitin-like modifier [Homo sapiens]
(165 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4826774 ISG15 ubiquitin-like modifier [Homo sapiens] 327 2e-90
gi|67191208 ubiquitin C [Homo sapiens] 78 4e-15
gi|11024714 ubiquitin B precursor [Homo sapiens] 77 7e-15
gi|4507761 ubiquitin and ribosomal protein L40 precursor [Homo s... 57 7e-09
gi|77539055 ubiquitin and ribosomal protein L40 precursor [Homo ... 57 7e-09
gi|208022622 ubiquitin and ribosomal protein S27a precursor [Hom... 54 6e-08
gi|4506713 ubiquitin and ribosomal protein S27a precursor [Homo ... 54 6e-08
gi|11321577 2'-5'-oligoadenylate synthetase-like isoform a [Homo... 50 7e-07
gi|4503659 ubiquitin-like protein fubi and ribosomal protein S30... 46 1e-05
gi|222352096 ubiquitin D [Homo sapiens] 45 3e-05
gi|239757745 PREDICTED: similar to hCG1790904 [Homo sapiens] 43 1e-04
gi|239752254 PREDICTED: similar to hCG1790904 [Homo sapiens] 43 1e-04
gi|239746765 PREDICTED: similar to hCG1790904 [Homo sapiens] 43 1e-04
gi|7657667 ubiquitin-like 4 [Homo sapiens] 43 1e-04
gi|5453760 neural precursor cell expressed, developmentally down... 38 0.003
gi|239755591 PREDICTED: similar to Putative ubiquitin-like prote... 37 0.008
gi|239750097 PREDICTED: hypothetical protein XP_002347291 [Homo ... 37 0.008
gi|44662819 ubiquitin-like 4B [Homo sapiens] 36 0.013
gi|109659841 dendritic cell-derived ubiquitin-like protein [Homo... 35 0.039
gi|52630449 ubiquitin specific protease 48 isoform a [Homo sapiens] 33 0.11
gi|193083197 ubiquitin-like domain containing CTD phosphatase 1 ... 33 0.15
gi|8567418 ubiquilin 3 [Homo sapiens] 30 0.73
gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens] 30 0.95
gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens] 30 0.95
gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens] 30 0.95
gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens] 30 0.95
gi|41152107 ubiquitin-like 7 [Homo sapiens] 30 0.95
gi|14249682 ubiquitin-like 7 [Homo sapiens] 30 0.95
gi|13376439 ubiquitin domain containing 1 [Homo sapiens] 30 1.2
gi|16753205 ubiquilin 1 isoform 2 [Homo sapiens] 29 1.6
>gi|4826774 ISG15 ubiquitin-like modifier [Homo sapiens]
Length = 165
Score = 327 bits (839), Expect = 2e-90
Identities = 165/165 (100%), Positives = 165/165 (100%)
Query: 1 MGWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPL 60
MGWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPL
Sbjct: 1 MGWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPL 60
Query: 61 ASQGLGPGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDD 120
ASQGLGPGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDD
Sbjct: 61 ASQGLGPGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDD 120
Query: 121 LFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGTEPGGRS 165
LFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGTEPGGRS
Sbjct: 121 LFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGTEPGGRS 165
>gi|67191208 ubiquitin C [Homo sapiens]
Length = 685
Score = 77.8 bits (190), Expect = 4e-15
Identities = 51/156 (32%), Positives = 83/156 (53%), Gaps = 3/156 (1%)
Query: 2 GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61
G + VK L G + + S ++ +KA+I K G+ + QQRL +G L+D L+
Sbjct: 152 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPSDQQRLIF--AGKQLEDGRTLS 209
Query: 62 SQGLGPGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121
+ ST+ LV+ + + I V+ G++ T EV + T+ ++K ++ EG+ D
Sbjct: 210 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 268
Query: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157
L F GK LED L +Y ++ ST+ + LRLRGG
Sbjct: 269 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304
Score = 77.4 bits (189), Expect = 5e-15
Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 3/156 (1%)
Query: 2 GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61
G + VK L G + + S ++ +KA+I K G+ QQRL +G L+D L+
Sbjct: 76 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLS 133
Query: 62 SQGLGPGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121
+ ST+ LV+ + + I V+ G++ T EV + T+ ++K ++ EG+ D
Sbjct: 134 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPSDQ 192
Query: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157
L F GK LED L +Y ++ ST+ + LRLRGG
Sbjct: 193 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228
Score = 77.0 bits (188), Expect = 7e-15
Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 3/156 (1%)
Query: 2 GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61
G + VK L G + + S ++ +KA+I K G+ QQRL +G L+D L+
Sbjct: 228 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLS 285
Query: 62 SQGLGPGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121
+ ST+ LV+ + + I V+ G++ T EV + T+ ++K ++ EG+ D
Sbjct: 286 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 344
Query: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157
L F GK LED L +Y ++ ST+ + LRLRGG
Sbjct: 345 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 380
Score = 77.0 bits (188), Expect = 7e-15
Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 3/156 (1%)
Query: 2 GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61
G + VK L G + + S ++ +KA+I K G+ QQRL +G L+D L+
Sbjct: 304 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLS 361
Query: 62 SQGLGPGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121
+ ST+ LV+ + + I V+ G++ T EV + T+ ++K ++ EG+ D
Sbjct: 362 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 420
Query: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157
L F GK LED L +Y ++ ST+ + LRLRGG
Sbjct: 421 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 456
Score = 77.0 bits (188), Expect = 7e-15
Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 3/156 (1%)
Query: 2 GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61
G + VK L G + + S ++ +KA+I K G+ QQRL +G L+D L+
Sbjct: 380 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLS 437
Query: 62 SQGLGPGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121
+ ST+ LV+ + + I V+ G++ T EV + T+ ++K ++ EG+ D
Sbjct: 438 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 496
Query: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157
L F GK LED L +Y ++ ST+ + LRLRGG
Sbjct: 497 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 532
Score = 77.0 bits (188), Expect = 7e-15
Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 3/156 (1%)
Query: 2 GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61
G + VK L G + + S ++ +KA+I K G+ QQRL +G L+D L+
Sbjct: 456 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLS 513
Query: 62 SQGLGPGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121
+ ST+ LV+ + + I V+ G++ T EV + T+ ++K ++ EG+ D
Sbjct: 514 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 572
Query: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157
L F GK LED L +Y ++ ST+ + LRLRGG
Sbjct: 573 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 608
Score = 77.0 bits (188), Expect = 7e-15
Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 3/156 (1%)
Query: 2 GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61
G + VK L G + + S ++ +KA+I K G+ QQRL +G L+D L+
Sbjct: 532 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLS 589
Query: 62 SQGLGPGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121
+ ST+ LV+ + + I V+ G++ T EV + T+ ++K ++ EG+ D
Sbjct: 590 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 648
Query: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157
L F GK LED L +Y ++ ST+ + LRLRGG
Sbjct: 649 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 684
Score = 53.9 bits (128), Expect = 6e-08
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 141
+ I V+ G++ T EV + T+ ++K ++ EG+ D L F GK LED L +Y
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 142 LKPLSTVFMNLRLRGG 157
++ ST+ + LRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>gi|11024714 ubiquitin B precursor [Homo sapiens]
Length = 229
Score = 77.0 bits (188), Expect = 7e-15
Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 3/156 (1%)
Query: 2 GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61
G + VK L G + + S ++ +KA+I K G+ QQRL +G L+D L+
Sbjct: 76 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLS 133
Query: 62 SQGLGPGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121
+ ST+ LV+ + + I V+ G++ T EV + T+ ++K ++ EG+ D
Sbjct: 134 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 192
Query: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157
L F GK LED L +Y ++ ST+ + LRLRGG
Sbjct: 193 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228
Score = 75.1 bits (183), Expect = 3e-14
Identities = 50/151 (33%), Positives = 80/151 (52%), Gaps = 3/151 (1%)
Query: 7 VKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLG 66
VK L G + + S ++ +KA+I K G+ QQRL +G L+D L+ +
Sbjct: 5 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLSDYNIQ 62
Query: 67 PGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF 126
ST+ LV+ + + I V+ G++ T EV + T+ ++K ++ EG+ D L F
Sbjct: 63 KESTLHLVL-RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 121
Query: 127 EGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157
GK LED L +Y ++ ST+ + LRLRGG
Sbjct: 122 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152
Score = 53.9 bits (128), Expect = 6e-08
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 141
+ I V+ G++ T EV + T+ ++K ++ EG+ D L F GK LED L +Y
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 142 LKPLSTVFMNLRLRGG 157
++ ST+ + LRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>gi|4507761 ubiquitin and ribosomal protein L40 precursor [Homo
sapiens]
Length = 128
Score = 57.0 bits (136), Expect = 7e-09
Identities = 31/83 (37%), Positives = 47/83 (56%)
Query: 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 141
+ I V+ G++ T EV + T+ ++K ++ EG+ D L F GK LED L +Y
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 142 LKPLSTVFMNLRLRGGGTEPGGR 164
++ ST+ + LRLRGG EP R
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLR 83
>gi|77539055 ubiquitin and ribosomal protein L40 precursor [Homo
sapiens]
Length = 128
Score = 57.0 bits (136), Expect = 7e-09
Identities = 31/83 (37%), Positives = 47/83 (56%)
Query: 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 141
+ I V+ G++ T EV + T+ ++K ++ EG+ D L F GK LED L +Y
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 142 LKPLSTVFMNLRLRGGGTEPGGR 164
++ ST+ + LRLRGG EP R
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLR 83
>gi|208022622 ubiquitin and ribosomal protein S27a precursor [Homo
sapiens]
Length = 156
Score = 53.9 bits (128), Expect = 6e-08
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 141
+ I V+ G++ T EV + T+ ++K ++ EG+ D L F GK LED L +Y
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 142 LKPLSTVFMNLRLRGG 157
++ ST+ + LRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>gi|4506713 ubiquitin and ribosomal protein S27a precursor [Homo
sapiens]
Length = 156
Score = 53.9 bits (128), Expect = 6e-08
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 141
+ I V+ G++ T EV + T+ ++K ++ EG+ D L F GK LED L +Y
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 142 LKPLSTVFMNLRLRGG 157
++ ST+ + LRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>gi|11321577 2'-5'-oligoadenylate synthetase-like isoform a [Homo
sapiens]
Length = 514
Score = 50.4 bits (119), Expect = 7e-07
Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 5/150 (3%)
Query: 5 LTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVA---LQDRVPLA 61
LTV+ +F + ++ + ++K +I + G Q RL+ G L R LA
Sbjct: 356 LTVEQRGYPDFNLIVNPYEPIRKVKEKIRRTRGYSGLQ-RLSFQVPGSERQLLSSRCSLA 414
Query: 62 SQGLGPGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121
G+ T + +++ + + V+N G S Y + + LKQQ+ +G+
Sbjct: 415 KYGIF-SHTHIYLLETIPSEIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQ 473
Query: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMN 151
L F+G+ L+D L LG YG++ T+ ++
Sbjct: 474 QQLEFQGQVLQDWLGLGIYGIQDSDTLILS 503
>gi|4503659 ubiquitin-like protein fubi and ribosomal protein S30
precursor [Homo sapiens]
Length = 133
Score = 46.2 bits (108), Expect = 1e-05
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 95 TYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRL 154
T+EV +TVA +K V+ LEG+ + + G PLED+ LG+ G++ L+T+ + R+
Sbjct: 12 TFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRM 71
Query: 155 RGG 157
GG
Sbjct: 72 LGG 74
>gi|222352096 ubiquitin D [Homo sapiens]
Length = 165
Score = 45.1 bits (105), Expect = 3e-05
Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 7/139 (5%)
Query: 24 SVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTV---LLVVDKCDE 80
SV ++K + K V Q L + L+ R L+S G+ T+ L VV DE
Sbjct: 29 SVKKIKEHVRSKTKVPVQDQVLLL--GSKILKPRRSLSSYGIDKEKTIHLTLKVVKPSDE 86
Query: 81 --PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLG 138
PL ++ ++ + +VR + +VA +K + G+ + +T GK LED +
Sbjct: 87 ELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRLEDGKMMA 146
Query: 139 EYGLKPLSTVFMNLRLRGG 157
+YG++ + +F+ GG
Sbjct: 147 DYGIRKGNLLFLACYCIGG 165
>gi|239757745 PREDICTED: similar to hCG1790904 [Homo sapiens]
Length = 334
Score = 43.1 bits (100), Expect = 1e-04
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 141
L I V+ +G++ T EV + + ++K ++ EG+ D L F GK LED L +
Sbjct: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
Query: 142 LKPLSTVFMNLRLRG 156
++ T+ + LRL G
Sbjct: 129 IQKEPTLHLLLRLCG 143
>gi|239752254 PREDICTED: similar to hCG1790904 [Homo sapiens]
Length = 334
Score = 43.1 bits (100), Expect = 1e-04
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 141
L I V+ +G++ T EV + + ++K ++ EG+ D L F GK LED L +
Sbjct: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
Query: 142 LKPLSTVFMNLRLRG 156
++ T+ + LRL G
Sbjct: 129 IQKEPTLHLLLRLCG 143
>gi|239746765 PREDICTED: similar to hCG1790904 [Homo sapiens]
Length = 334
Score = 43.1 bits (100), Expect = 1e-04
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 141
L I V+ +G++ T EV + + ++K ++ EG+ D L F GK LED L +
Sbjct: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
Query: 142 LKPLSTVFMNLRLRG 156
++ T+ + LRL G
Sbjct: 129 IQKEPTLHLLLRLCG 143
>gi|7657667 ubiquitin-like 4 [Homo sapiens]
Length = 157
Score = 43.1 bits (100), Expect = 1e-04
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 5 LTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQG 64
LTVK L G E + + VS LK +++K+ V QQRL G AL D L+
Sbjct: 3 LTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLF--KGKALADGKRLSDYS 60
Query: 65 LGPGSTVLLVVDKCDEPL 82
+GP S + LVV ++ L
Sbjct: 61 IGPNSKLNLVVKPLEKVL 78
>gi|5453760 neural precursor cell expressed, developmentally
down-regulated 8 [Homo sapiens]
Length = 81
Score = 38.1 bits (87), Expect = 0.003
Identities = 21/75 (28%), Positives = 36/75 (48%)
Query: 84 ILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLK 143
I V+ G+ ++ T V +K++V EG+ L + GK + D+ +Y +
Sbjct: 3 IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL 62
Query: 144 PLSTVFMNLRLRGGG 158
S + + L LRGGG
Sbjct: 63 GGSVLHLVLALRGGG 77
Score = 34.3 bits (77), Expect = 0.050
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 5 LTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQG 64
+ VK L G E ++ + + V +K ++ +K G+ QQRL SG + D A
Sbjct: 3 IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY--SGKQMNDEKTAADYK 60
Query: 65 LGPGSTVLLVV 75
+ GS + LV+
Sbjct: 61 ILGGSVLHLVL 71
>gi|239755591 PREDICTED: similar to Putative ubiquitin-like protein
FUBI-like protein ENSP00000310146 [Homo sapiens]
Length = 137
Score = 37.0 bits (84), Expect = 0.008
Identities = 22/63 (34%), Positives = 36/63 (57%)
Query: 95 TYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRL 154
T EV +TVA K V+ LEG+ + + G PL+++ LG+ G++ L+T+ + R
Sbjct: 37 TLEVTGLETVAQSKAHVASLEGLIPEDKVVLLAGSPLQNEATLGQCGVEALTTLEVVGRR 96
Query: 155 RGG 157
GG
Sbjct: 97 LGG 99
>gi|239750097 PREDICTED: hypothetical protein XP_002347291 [Homo
sapiens]
Length = 143
Score = 37.0 bits (84), Expect = 0.008
Identities = 22/63 (34%), Positives = 36/63 (57%)
Query: 95 TYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRL 154
T EV +TVA K V+ LEG+ + + G PL+++ LG+ G++ L+T+ + R
Sbjct: 37 TLEVTGLETVAQSKAHVASLEGLIPEDKVVLLAGSPLQNEATLGQCGVEALTTLEVVGRR 96
Query: 155 RGG 157
GG
Sbjct: 97 LGG 99
>gi|44662819 ubiquitin-like 4B [Homo sapiens]
Length = 174
Score = 36.2 bits (82), Expect = 0.013
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 5 LTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQG 64
LTVK+L G + +S SV+ LK +++++ V QQ L G L+D L+
Sbjct: 3 LTVKLLLGQRCSLKVSGQESVATLKRLVSRRLKVPEEQQHLLFR--GQLLEDDKHLSDYC 60
Query: 65 LGPGSTVLLVVDKCDE 80
+GP +++ +++ ++
Sbjct: 61 IGPNASINVIMQPLEK 76
Score = 28.9 bits (63), Expect = 2.1
Identities = 18/58 (31%), Positives = 32/58 (55%)
Query: 91 GRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTV 148
G+ + +V ++VA LK+ VS V ++ L F G+ LED L +Y + P +++
Sbjct: 10 GQRCSLKVSGQESVATLKRLVSRRLKVPEEQQHLLFRGQLLEDDKHLSDYCIGPNASI 67
>gi|109659841 dendritic cell-derived ubiquitin-like protein [Homo
sapiens]
Length = 234
Score = 34.7 bits (78), Expect = 0.039
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 86 VRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGE 139
+R + G+ VR T TV H+K+++ EGV+ F G+PL D++ E
Sbjct: 156 LRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEE 209
>gi|52630449 ubiquitin specific protease 48 isoform a [Homo sapiens]
Length = 1035
Score = 33.1 bits (74), Expect = 0.11
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 19 LSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKC 78
+S++ ++ ELK QI V F Q L++ + D L + G+ P S +LL K
Sbjct: 949 VSANQTLKELKIQIMHAFSVAPFDQNLSI-DGKILSDDCATLGTLGVIPESVILL---KA 1004
Query: 79 DEPLS 83
DEP++
Sbjct: 1005 DEPIA 1009
>gi|193083197 ubiquitin-like domain containing CTD phosphatase 1
[Homo sapiens]
Length = 318
Score = 32.7 bits (73), Expect = 0.15
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGV---QDDLFWLTFEGKPLEDQLPLG 138
L I+V+ S + TV LKQ + L GV + L L +GKP E+ + LG
Sbjct: 3 LPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLG 62
Query: 139 EYGLKPLSTVFM 150
LKP + + M
Sbjct: 63 ALKLKPNTKIMM 74
>gi|8567418 ubiquilin 3 [Homo sapiens]
Length = 655
Score = 30.4 bits (67), Expect = 0.73
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 5 LTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQG 64
+TVK E S++ + ++ +LK +I+Q+ H Q L + +G L+D LA G
Sbjct: 24 VTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQ--LVLIFAGKILKDPDSLAQCG 80
Query: 65 LGPGSTVLLVVDK 77
+ G TV LV+ +
Sbjct: 81 VRDGLTVHLVIKR 93
Score = 28.5 bits (62), Expect = 2.8
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 141
+ + V+ K + + V T T+ LK+++S D L F GK L+D L + G
Sbjct: 22 IKVTVKTPKDKED-FSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 80
Query: 142 LKPLSTVFMNLR 153
++ TV + ++
Sbjct: 81 VRDGLTVHLVIK 92
>gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 30.0 bits (66), Expect = 0.95
Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 67 PGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF 126
P + V++ D L +LV+ ++ T+ V V K+ ++ + + L +
Sbjct: 3 PNDSTSTAVEEPDS-LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY 61
Query: 127 EGKPLEDQLPLGEYGL 142
+G+ L+D L EY +
Sbjct: 62 QGRVLQDDKKLQEYNV 77
>gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 30.0 bits (66), Expect = 0.95
Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 67 PGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF 126
P + V++ D L +LV+ ++ T+ V V K+ ++ + + L +
Sbjct: 3 PNDSTSTAVEEPDS-LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY 61
Query: 127 EGKPLEDQLPLGEYGL 142
+G+ L+D L EY +
Sbjct: 62 QGRVLQDDKKLQEYNV 77
>gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 30.0 bits (66), Expect = 0.95
Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 67 PGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF 126
P + V++ D L +LV+ ++ T+ V V K+ ++ + + L +
Sbjct: 3 PNDSTSTAVEEPDS-LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY 61
Query: 127 EGKPLEDQLPLGEYGL 142
+G+ L+D L EY +
Sbjct: 62 QGRVLQDDKKLQEYNV 77
>gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens]
Length = 1132
Score = 30.0 bits (66), Expect = 0.95
Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 67 PGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF 126
P + V++ D L +LV+ ++ T+ V V K+ ++ + + L +
Sbjct: 3 PNDSTSTAVEEPDS-LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY 61
Query: 127 EGKPLEDQLPLGEYGL 142
+G+ L+D L EY +
Sbjct: 62 QGRVLQDDKKLQEYNV 77
>gi|41152107 ubiquitin-like 7 [Homo sapiens]
Length = 380
Score = 30.0 bits (66), Expect = 0.95
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 103 TVAHLKQQVSGL--EGVQD-DLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGT 159
+++ LKQ ++G E V D +L L + G+ L+D L YG++P STV + LR
Sbjct: 39 SISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGSTVHV---LRKSWP 95
Query: 160 EP 161
EP
Sbjct: 96 EP 97
>gi|14249682 ubiquitin-like 7 [Homo sapiens]
Length = 380
Score = 30.0 bits (66), Expect = 0.95
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 103 TVAHLKQQVSGL--EGVQD-DLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGT 159
+++ LKQ ++G E V D +L L + G+ L+D L YG++P STV + LR
Sbjct: 39 SISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGSTVHV---LRKSWP 95
Query: 160 EP 161
EP
Sbjct: 96 EP 97
>gi|13376439 ubiquitin domain containing 1 [Homo sapiens]
Length = 227
Score = 29.6 bits (65), Expect = 1.2
Identities = 18/54 (33%), Positives = 25/54 (46%)
Query: 86 VRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGE 139
VR + G+ L TV LK+Q+ EG++ F GK L D+ L E
Sbjct: 153 VRLSTGKDVRLSASLPDTVGQLKRQLHAQEGIEPSWQRWFFSGKLLTDRTRLQE 206
>gi|16753205 ubiquilin 1 isoform 2 [Homo sapiens]
Length = 561
Score = 29.3 bits (64), Expect = 1.6
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 5 LTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQG 64
+TVK E + ++ + SV + K +I+++ H Q L + +G L+D+ L+ G
Sbjct: 39 VTVKTPKEKE-EFAVPENSSVQQFKEEISKRFKSHTDQ--LVLIFAGKILKDQDTLSQHG 95
Query: 65 LGPGSTVLLVVDKCDEP 81
+ G TV LV+ + P
Sbjct: 96 IHDGLTVHLVIKTQNRP 112
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.134 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,153,891
Number of Sequences: 37866
Number of extensions: 256286
Number of successful extensions: 587
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 532
Number of HSP's gapped (non-prelim): 67
length of query: 165
length of database: 18,247,518
effective HSP length: 94
effective length of query: 71
effective length of database: 14,688,114
effective search space: 1042856094
effective search space used: 1042856094
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.