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Search of human proteins with 4826708
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4826708 ephrin A3 [Homo sapiens]
(238 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4826708 ephrin A3 [Homo sapiens] 505 e-143
gi|27894381 ephrin-A2 precursor [Homo sapiens] 167 1e-41
gi|4503487 ephrin-A5 [Homo sapiens] 159 2e-39
gi|33359682 ephrin A1 isoform a precursor [Homo sapiens] 147 6e-36
gi|4885197 ephrin A4 isoform a [Homo sapiens] 141 6e-34
gi|100913200 ephrin A4 isoform c [Homo sapiens] 139 2e-33
gi|33359686 ephrin A4 isoform b [Homo sapiens] 139 3e-33
gi|33359680 ephrin A1 isoform b precursor [Homo sapiens] 132 2e-31
gi|4503489 ephrin-B3 precursor [Homo sapiens] 64 9e-11
gi|4758250 ephrin B2 [Homo sapiens] 62 6e-10
gi|4758248 ephrin-B1 precursor [Homo sapiens] 52 5e-07
gi|31621309 leucine rich repeat containing 6 [Homo sapiens] 33 0.28
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens] 32 0.48
gi|7669528 neuregulin 2 isoform 2 [Homo sapiens] 32 0.63
gi|7669532 neuregulin 2 isoform 4 [Homo sapiens] 32 0.63
gi|7669530 neuregulin 2 isoform 3 [Homo sapiens] 32 0.63
gi|4758832 neuregulin 2 isoform 1 [Homo sapiens] 32 0.63
gi|28195386 sex-determining region Y-box 2 [Homo sapiens] 31 0.82
gi|8567388 period 3 [Homo sapiens] 31 1.1
gi|212549553 interleukin enhancer binding factor 3 isoform d [Ho... 31 1.1
gi|24234750 interleukin enhancer binding factor 3 isoform a [Hom... 31 1.1
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 30 1.8
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 30 1.8
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 30 1.8
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 30 1.8
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 30 1.8
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 30 1.8
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 30 1.8
gi|239757704 PREDICTED: hypothetical protein XP_002345526 [Homo ... 30 1.8
gi|239753219 PREDICTED: similar to zinc finger protein 570 [Homo... 30 1.8
>gi|4826708 ephrin A3 [Homo sapiens]
Length = 238
Score = 505 bits (1301), Expect = e-143
Identities = 238/238 (100%), Positives = 238/238 (100%)
Query: 1 MAAAPLLLLLLLVPVPLLPLLAQGPGGALGNRHAVYWNSSNQHLRREGYTVQVNVNDYLD 60
MAAAPLLLLLLLVPVPLLPLLAQGPGGALGNRHAVYWNSSNQHLRREGYTVQVNVNDYLD
Sbjct: 1 MAAAPLLLLLLLVPVPLLPLLAQGPGGALGNRHAVYWNSSNQHLRREGYTVQVNVNDYLD 60
Query: 61 IYCPHYNSSGVGPGAGPGPGGGAEQYVLYMVSRNGYRTCNASQGFKRWECNRPHAPHSPI 120
IYCPHYNSSGVGPGAGPGPGGGAEQYVLYMVSRNGYRTCNASQGFKRWECNRPHAPHSPI
Sbjct: 61 IYCPHYNSSGVGPGAGPGPGGGAEQYVLYMVSRNGYRTCNASQGFKRWECNRPHAPHSPI 120
Query: 121 KFSEKFQRYSAFSLGYEFHAGHEYYYISTPTHNLHWKCLRMKVFVCCASTSHSGEKPVPT 180
KFSEKFQRYSAFSLGYEFHAGHEYYYISTPTHNLHWKCLRMKVFVCCASTSHSGEKPVPT
Sbjct: 121 KFSEKFQRYSAFSLGYEFHAGHEYYYISTPTHNLHWKCLRMKVFVCCASTSHSGEKPVPT 180
Query: 181 LPQFTMGPNVKINVLEDFEGENPQVPKLEKSISGTSPKREHLPLAVGIAFFLMTFLAS 238
LPQFTMGPNVKINVLEDFEGENPQVPKLEKSISGTSPKREHLPLAVGIAFFLMTFLAS
Sbjct: 181 LPQFTMGPNVKINVLEDFEGENPQVPKLEKSISGTSPKREHLPLAVGIAFFLMTFLAS 238
>gi|27894381 ephrin-A2 precursor [Homo sapiens]
Length = 213
Score = 167 bits (422), Expect = 1e-41
Identities = 93/174 (53%), Positives = 113/174 (64%), Gaps = 17/174 (9%)
Query: 2 AAAPLL-LLLLLVPVPLLPLL-AQGPGGALGNRHAVYWNSSNQHLRRE------GYTVQV 53
A PLL LLLLL+P+P P A+ A +R+AVYWN SN GYTV+V
Sbjct: 4 AQRPLLPLLLLLLPLPPPPFARAEDAARANSDRYAVYWNRSNPRFHAGAGDDGGGYTVEV 63
Query: 54 NVNDYLDIYCPHYNSSGVGPGAGPGPGGGAEQYVLYMVSRNGYRTCNASQ-GFKRWECNR 112
++NDYLDIYCPHY GA P E YVLYMV+ G+ +C+ Q GFKRWECNR
Sbjct: 64 SINDYLDIYCPHY-------GAPLPPAERMEHYVLYMVNGEGHASCDHRQRGFKRWECNR 116
Query: 113 PHAPHSPIKFSEKFQRYSAFSLGYEFHAGHEYYYIS-TPTHNLHWKCLRMKVFV 165
P AP P+KFSEKFQ ++ FSLG+EF GHEYYYIS TP + + CLR+KV+V
Sbjct: 117 PAAPGGPLKFSEKFQLFTPFSLGFEFRPGHEYYYISATPPNAVDRPCLRLKVYV 170
>gi|4503487 ephrin-A5 [Homo sapiens]
Length = 228
Score = 159 bits (403), Expect = 2e-39
Identities = 80/161 (49%), Positives = 108/161 (67%), Gaps = 11/161 (6%)
Query: 8 LLLLLVPVPLLPLLAQGPGG-ALGNRHAVYWNSSNQHLRREGYTVQVNVNDYLDIYCPHY 66
+L L+ V + + +Q PG A+ +R+AVYWNSSN +R Y + V +NDYLD++CPHY
Sbjct: 6 MLTLVFLVLWMCVFSQDPGSKAVADRYAVYWNSSNPRFQRGDYHIDVCINDYLDVFCPHY 65
Query: 67 NSSGVGPGAGPGPGGGAEQYVLYMVSRNGYRTCN-ASQGFKRWECNRPHAPHSPIKFSEK 125
S P E+YVLYMV+ +GY C+ S+GFKRWECNRPH+P+ P+KFSEK
Sbjct: 66 EDSV--------PEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEK 117
Query: 126 FQRYSAFSLGYEFHAGHEYYYISTP-THNLHWKCLRMKVFV 165
FQ ++ FSLG+EF G EY+YIS+ N CL++KVFV
Sbjct: 118 FQLFTPFSLGFEFRPGREYFYISSAIPDNGRRSCLKLKVFV 158
>gi|33359682 ephrin A1 isoform a precursor [Homo sapiens]
Length = 205
Score = 147 bits (372), Expect = 6e-36
Identities = 73/148 (49%), Positives = 88/148 (59%), Gaps = 8/148 (5%)
Query: 19 PLLAQGPGGALGNRHAVYWNSSNQHLRREGYTVQVNVNDYLDIYCPHYNSSGVGPGAGPG 78
PLL A +RH V+WNSSN R E YT+ V +NDY+DI CPHY V A
Sbjct: 7 PLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVADAA--- 63
Query: 79 PGGGAEQYVLYMVSRNGYRTCNA-SQGFKRWECNRPHAPHSPIKFSEKFQRYSAFSLGYE 137
EQY+LY+V Y+ C S+ RW+CNRP A H P K SEKFQR++ F+LG E
Sbjct: 64 ----MEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKE 119
Query: 138 FHAGHEYYYISTPTHNLHWKCLRMKVFV 165
F GH YYYIS P H +CLR+KV V
Sbjct: 120 FKEGHSYYYISKPIHQHEDRCLRLKVTV 147
>gi|4885197 ephrin A4 isoform a [Homo sapiens]
Length = 201
Score = 141 bits (355), Expect = 6e-34
Identities = 77/173 (44%), Positives = 93/173 (53%), Gaps = 13/173 (7%)
Query: 8 LLLLLVPVPLLPLLAQGPGGALGNRHAVYWNSSNQHLRREGYTVQVNVNDYLDIYCPHYN 67
LL LL V L G RH VYWNSSN L R V++ +NDYLDI CPHY
Sbjct: 3 LLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPHYE 62
Query: 68 SSGVGPGAGPGPGGGAEQYVLYMVSRNGYRTCNAS--QGFKRWECNRPHAPHSPIKFSEK 125
GPGP G E + LYMV GY +C A + +KRW C+ P ++FSEK
Sbjct: 63 --------GPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCS---LPFGHVQFSEK 111
Query: 126 FQRYSAFSLGYEFHAGHEYYYISTPTHNLHWKCLRMKVFVCCASTSHSGEKPV 178
QR++ FSLG+EF G YYYIS PT +CLR++V VCC PV
Sbjct: 112 IQRFTPFSLGFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKERKSESAHPV 164
>gi|100913200 ephrin A4 isoform c [Homo sapiens]
Length = 193
Score = 139 bits (350), Expect = 2e-33
Identities = 78/178 (43%), Positives = 98/178 (55%), Gaps = 19/178 (10%)
Query: 8 LLLLLVPVPLLPLLAQGPGGALGNRHAVYWNSSNQHLRREGYTVQVNVNDYLDIYCPHYN 67
LL LL V L G RH VYWNSSN L R V++ +NDYLDI CPHY
Sbjct: 3 LLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPHYE 62
Query: 68 SSGVGPGAGPGPGGGAEQYVLYMVSRNGYRTCNAS--QGFKRWECNRPHAPHSPIKFSEK 125
GPGP G E + LYMV GY +C A + +KRW C+ P ++FSEK
Sbjct: 63 --------GPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCS---LPFGHVQFSEK 111
Query: 126 FQRYSAFSLGYEFHAGHEYYYISTPTHNLHWKCLRMKVFVCCASTSHSGEKPVPTLPQ 183
QR++ FSLG+EF G YYYIS PT +CLR++V VCC E+ +P+ P+
Sbjct: 112 IQRFTPFSLGFEFLPGETYYYISVPTPESSGQCLRLQVSVCCK------ERNLPSHPK 163
>gi|33359686 ephrin A4 isoform b [Homo sapiens]
Length = 207
Score = 139 bits (349), Expect = 3e-33
Identities = 75/162 (46%), Positives = 91/162 (56%), Gaps = 13/162 (8%)
Query: 8 LLLLLVPVPLLPLLAQGPGGALGNRHAVYWNSSNQHLRREGYTVQVNVNDYLDIYCPHYN 67
LL LL V L G RH VYWNSSN L R V++ +NDYLDI CPHY
Sbjct: 3 LLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPHYE 62
Query: 68 SSGVGPGAGPGPGGGAEQYVLYMVSRNGYRTCNAS--QGFKRWECNRPHAPHSPIKFSEK 125
GPGP G E + LYMV GY +C A + +KRW C+ P ++FSEK
Sbjct: 63 --------GPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCS---LPFGHVQFSEK 111
Query: 126 FQRYSAFSLGYEFHAGHEYYYISTPTHNLHWKCLRMKVFVCC 167
QR++ FSLG+EF G YYYIS PT +CLR++V VCC
Sbjct: 112 IQRFTPFSLGFEFLPGETYYYISVPTPESSGQCLRLQVSVCC 153
>gi|33359680 ephrin A1 isoform b precursor [Homo sapiens]
Length = 183
Score = 132 bits (333), Expect = 2e-31
Identities = 65/131 (49%), Positives = 78/131 (59%), Gaps = 8/131 (6%)
Query: 19 PLLAQGPGGALGNRHAVYWNSSNQHLRREGYTVQVNVNDYLDIYCPHYNSSGVGPGAGPG 78
PLL A +RH V+WNSSN R E YT+ V +NDY+DI CPHY V A
Sbjct: 7 PLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVADAA--- 63
Query: 79 PGGGAEQYVLYMVSRNGYRTCNA-SQGFKRWECNRPHAPHSPIKFSEKFQRYSAFSLGYE 137
EQY+LY+V Y+ C S+ RW+CNRP A H P K SEKFQR++ F+LG E
Sbjct: 64 ----MEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKE 119
Query: 138 FHAGHEYYYIS 148
F GH YYYIS
Sbjct: 120 FKEGHSYYYIS 130
>gi|4503489 ephrin-B3 precursor [Homo sapiens]
Length = 340
Score = 64.3 bits (155), Expect = 9e-11
Identities = 41/117 (35%), Positives = 56/117 (47%), Gaps = 11/117 (9%)
Query: 35 VYWNSSNQHLRREG-YTVQVNVNDYLDIYCPHYNSSGVGPGAGPGPGGGAEQYVLYMVSR 93
VYWNS+N+ + EG Y + + D LD+ CP G P E Y LY+V
Sbjct: 33 VYWNSANKRFQAEGGYVLYPQIGDRLDLLCPRARPPG------PHSSPNYEFYKLYLVGG 86
Query: 94 NGYRTCNASQGFKRW-ECNRPHAPHSPIKFSEKFQRYSAFSLGYEFHAGHEYYYIST 149
R C A C+RP ++F+ KFQ YS G+EF + H+YY I+T
Sbjct: 87 AQGRRCEAPPAPNLLLTCDRPDLD---LRFTIKFQEYSPNLWGHEFRSHHDYYIIAT 140
>gi|4758250 ephrin B2 [Homo sapiens]
Length = 333
Score = 61.6 bits (148), Expect = 6e-10
Identities = 52/184 (28%), Positives = 73/184 (39%), Gaps = 27/184 (14%)
Query: 35 VYWNSSN-QHLRREGYTVQVNVNDYLDIYCPHYNSSGVGPGAGPGPGGGAEQYVLYMVSR 93
+YWNSSN + L +G + + D LDI CP +S VG E Y +YMV +
Sbjct: 33 IYWNSSNSKFLPGQGLVLYPQIGDKLDIICPKVDSKTVGQ---------YEYYKVYMVDK 83
Query: 94 NGYRTCNAS-QGFKRWECNRPHAPHSPIKFSEKFQRYSAFSLGYEFHAGHEYYYISTPTH 152
+ C + C +P IKF+ KFQ +S G EF +YY IST
Sbjct: 84 DQADRCTIKKENTPLLNCAKPD---QDIKFTIKFQEFSPNLWGLEFQKNKDYYIISTSNG 140
Query: 153 NLHW-------------KCLRMKVFVCCASTSHSGEKPVPTLPQFTMGPNVKINVLEDFE 199
+L + MKV +S + K P+ G N + + F
Sbjct: 141 SLEGLDNQEGGVCQTRAMKILMKVGQDASSAGSTRNKDPTRRPELEAGTNGRSSTTSPFV 200
Query: 200 GENP 203
NP
Sbjct: 201 KPNP 204
>gi|4758248 ephrin-B1 precursor [Homo sapiens]
Length = 346
Score = 52.0 bits (123), Expect = 5e-07
Identities = 55/208 (26%), Positives = 81/208 (38%), Gaps = 37/208 (17%)
Query: 31 NRHAVYWNSSN-QHLRREGYTVQVNVNDYLDIYCPHYNSSGVGPGAGPGPGGGAEQYVLY 89
N V W+S N + L +G + + D LDI CP + G E Y LY
Sbjct: 31 NLEPVSWSSLNPKFLSGKGLVIYPKIGDKLDIICPRAEA-----------GRPYEYYKLY 79
Query: 90 MVSRNGYRTCNASQGFKRW-ECNRPHAPHSPIKFSEKFQRYSAFSLGYEFHAGHEYYYIS 148
+V C+ CNRP I+F+ KFQ +S +G EF H+YY S
Sbjct: 80 LVRPEQAAACSTVLDPNVLVTCNRPE---QEIRFTIKFQEFSPNYMGLEFKKHHDYYITS 136
Query: 149 TPTHNLH---------WKCLRMKVFVCCA-----------STSHSGEKPVPTLPQFTMGP 188
T +L + MK+ + +TS ++ T+ T P
Sbjct: 137 TSNGSLEGLENREGGVCRTRTMKIIMKVGQDPNAVTPEQLTTSRPSKEADNTVKMATQAP 196
Query: 189 NVKINVLEDFEGENPQVPKLEKSISGTS 216
+ L D +G++ V + EKS G S
Sbjct: 197 GSR-GSLGDSDGKHETVNQEEKSGPGAS 223
>gi|31621309 leucine rich repeat containing 6 [Homo sapiens]
Length = 466
Score = 32.7 bits (73), Expect = 0.28
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 152 HNLHWKCLRMKVFVCCASTSHSGEKPVPTLPQF------TMGPNVKINVLEDFEGENPQV 205
HN+H K L + + CAS H E V TLPQ + P+ +I L+D+ PQ+
Sbjct: 111 HNIHLKELFL-MGNPCASFDHYREFVVATLPQLKWLDGKEIEPSERIKALQDYSVIEPQI 169
Query: 206 PKLEK 210
+ EK
Sbjct: 170 REQEK 174
>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
Length = 391
Score = 32.0 bits (71), Expect = 0.48
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 45 RREGYTVQVNVNDYLDIYCPHYNSSGVGPGAGPGPG-GGAEQYVLYMVSRNGY 96
R Y+ + Y D Y + NS P GP P GG+ +Y Y SR+GY
Sbjct: 268 RDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGGSSRYDDYSSSRDGY 320
>gi|7669528 neuregulin 2 isoform 2 [Homo sapiens]
Length = 844
Score = 31.6 bits (70), Expect = 0.63
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
Query: 65 HYNSSGVGPGAGPGPGGGAEQYVLYMVSRNGYRTCNASQGFKRWEC----NRPHAPHSPI 120
H G GPG GPGPG GA+ Y + Y A G +R C + P SP
Sbjct: 644 HPAPPGPGPGPGPGPGPGADMQRSY----DSYYYPAAGPGPRRGTCALGGSLGSLPASPF 699
Query: 121 KFSE 124
+ E
Sbjct: 700 RIPE 703
>gi|7669532 neuregulin 2 isoform 4 [Homo sapiens]
Length = 852
Score = 31.6 bits (70), Expect = 0.63
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
Query: 65 HYNSSGVGPGAGPGPGGGAEQYVLYMVSRNGYRTCNASQGFKRWEC----NRPHAPHSPI 120
H G GPG GPGPG GA+ Y + Y A G +R C + P SP
Sbjct: 652 HPAPPGPGPGPGPGPGPGADMQRSY----DSYYYPAAGPGPRRGTCALGGSLGSLPASPF 707
Query: 121 KFSE 124
+ E
Sbjct: 708 RIPE 711
>gi|7669530 neuregulin 2 isoform 3 [Homo sapiens]
Length = 858
Score = 31.6 bits (70), Expect = 0.63
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
Query: 65 HYNSSGVGPGAGPGPGGGAEQYVLYMVSRNGYRTCNASQGFKRWEC----NRPHAPHSPI 120
H G GPG GPGPG GA+ Y + Y A G +R C + P SP
Sbjct: 658 HPAPPGPGPGPGPGPGPGADMQRSY----DSYYYPAAGPGPRRGTCALGGSLGSLPASPF 713
Query: 121 KFSE 124
+ E
Sbjct: 714 RIPE 717
>gi|4758832 neuregulin 2 isoform 1 [Homo sapiens]
Length = 850
Score = 31.6 bits (70), Expect = 0.63
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
Query: 65 HYNSSGVGPGAGPGPGGGAEQYVLYMVSRNGYRTCNASQGFKRWEC----NRPHAPHSPI 120
H G GPG GPGPG GA+ Y + Y A G +R C + P SP
Sbjct: 650 HPAPPGPGPGPGPGPGPGADMQRSY----DSYYYPAAGPGPRRGTCALGGSLGSLPASPF 705
Query: 121 KFSE 124
+ E
Sbjct: 706 RIPE 709
>gi|28195386 sex-determining region Y-box 2 [Homo sapiens]
Length = 317
Score = 31.2 bits (69), Expect = 0.82
Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 7/100 (7%)
Query: 61 IYCPHYNSSGVGPGAGPGPGGGAEQYVLYMVSRNGYRTCNASQGFKRWECNRPHAP---- 116
+ P NS G G G G G G Q + NG+ N S + + P P
Sbjct: 131 LLAPGGNSMASGVGVGAGLGAGVNQRMDSYAHMNGW--SNGSYSMMQDQLGYPQHPGLNA 188
Query: 117 HSPIKFSEKFQRYSAFSLGYEFHAGHEYYYISTPTHNLHW 156
H + + RY +L Y + Y +PT+++ +
Sbjct: 189 HGAAQM-QPMHRYDVSALQYNSMTSSQTYMNGSPTYSMSY 227
>gi|8567388 period 3 [Homo sapiens]
Length = 1201
Score = 30.8 bits (68), Expect = 1.1
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 166 CCASTSHSGEKPVPTLPQFTMGPNVKINVLEDFEGENPQVPKLEKSISGTSPKREH-LPL 224
CC S + S PT P M P+ ++ F P E + GT+P+ H LPL
Sbjct: 770 CCPSAASSPHTSSPTFPPAAMVPSQAPYLVPAFPLPAATSPGREYAAPGTAPEGLHGLPL 829
Query: 225 AVGI 228
+ G+
Sbjct: 830 SEGL 833
>gi|212549553 interleukin enhancer binding factor 3 isoform d [Homo
sapiens]
Length = 898
Score = 30.8 bits (68), Expect = 1.1
Identities = 35/132 (26%), Positives = 47/132 (35%), Gaps = 21/132 (15%)
Query: 23 QGPGGALGNRHAVYWNSSNQHLRREGYTVQVNVNDYLDIYCPHYNSSGVGPGAGPGPGGG 82
+G GGA H Y N+ + GY Y Y + SG G G G GGG
Sbjct: 659 RGFGGA---NHGGYMNAGAGY-GSYGYGGNSATAGYSQFYS-NGGHSGNASGGGGGGGGG 713
Query: 83 AEQYVLYMVSRNGYRTCNASQGFKRWECNRPHAP-HSPIKFSEKFQRYSAFSLGYEFHAG 141
+ Y Y N N P P H+ K Q+ ++ GY+ H G
Sbjct: 714 SSGYGSYYQGDN---------------YNSPVPPKHAGKKQPHGGQQKPSYGSGYQSHQG 758
Query: 142 HEYYYISTPTHN 153
+ Y +P N
Sbjct: 759 QQQSYNQSPYSN 770
>gi|24234750 interleukin enhancer binding factor 3 isoform a [Homo
sapiens]
Length = 894
Score = 30.8 bits (68), Expect = 1.1
Identities = 35/132 (26%), Positives = 47/132 (35%), Gaps = 21/132 (15%)
Query: 23 QGPGGALGNRHAVYWNSSNQHLRREGYTVQVNVNDYLDIYCPHYNSSGVGPGAGPGPGGG 82
+G GGA H Y N+ + GY Y Y + SG G G G GGG
Sbjct: 655 RGFGGA---NHGGYMNAGAGY-GSYGYGGNSATAGYSQFYS-NGGHSGNASGGGGGGGGG 709
Query: 83 AEQYVLYMVSRNGYRTCNASQGFKRWECNRPHAP-HSPIKFSEKFQRYSAFSLGYEFHAG 141
+ Y Y N N P P H+ K Q+ ++ GY+ H G
Sbjct: 710 SSGYGSYYQGDN---------------YNSPVPPKHAGKKQPHGGQQKPSYGSGYQSHQG 754
Query: 142 HEYYYISTPTHN 153
+ Y +P N
Sbjct: 755 QQQSYNQSPYSN 766
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 30.0 bits (66), Expect = 1.8
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 64 PHYNSSGVGPGAGPGPGGG 82
P +++G GPG GPGPG G
Sbjct: 223 PSVSATGPGPGPGPGPGPG 241
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 30.0 bits (66), Expect = 1.8
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 64 PHYNSSGVGPGAGPGPGGG 82
P +++G GPG GPGPG G
Sbjct: 223 PSVSATGPGPGPGPGPGPG 241
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 30.0 bits (66), Expect = 1.8
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 64 PHYNSSGVGPGAGPGPGGG 82
P +++G GPG GPGPG G
Sbjct: 223 PSVSATGPGPGPGPGPGPG 241
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 30.0 bits (66), Expect = 1.8
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 64 PHYNSSGVGPGAGPGPGGG 82
P +++G GPG GPGPG G
Sbjct: 223 PSVSATGPGPGPGPGPGPG 241
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 30.0 bits (66), Expect = 1.8
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 64 PHYNSSGVGPGAGPGPGGG 82
P +++G GPG GPGPG G
Sbjct: 223 PSVSATGPGPGPGPGPGPG 241
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 30.0 bits (66), Expect = 1.8
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 64 PHYNSSGVGPGAGPGPGGG 82
P +++G GPG GPGPG G
Sbjct: 223 PSVSATGPGPGPGPGPGPG 241
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 30.0 bits (66), Expect = 1.8
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 64 PHYNSSGVGPGAGPGPGGG 82
P +++G GPG GPGPG G
Sbjct: 223 PSVSATGPGPGPGPGPGPG 241
>gi|239757704 PREDICTED: hypothetical protein XP_002345526 [Homo
sapiens]
Length = 67
Score = 30.0 bits (66), Expect = 1.8
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 70 GVGPGAGPGPGGGAEQ 85
G GPG+G G GGGAEQ
Sbjct: 33 GPGPGSGDGDGGGAEQ 48
>gi|239753219 PREDICTED: similar to zinc finger protein 570 [Homo
sapiens]
Length = 538
Score = 30.0 bits (66), Expect = 1.8
Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 14/74 (18%)
Query: 104 GFKRWECNRPHAPHSPIKFSEKFQRYSAFSLGYEFHAGHEYYYISTPTHNLHWKCLRMKV 163
G K W+CN + + F YSAF L H G + Y N K +
Sbjct: 233 GKKPWKCN---------ECEKAFSYYSAFVLHQRIHTGEKPYEC-----NECGKAFSQSI 278
Query: 164 FVCCASTSHSGEKP 177
+ H+GEKP
Sbjct: 279 HLTLHQRIHTGEKP 292
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.138 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,385,127
Number of Sequences: 37866
Number of extensions: 599744
Number of successful extensions: 2855
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 2673
Number of HSP's gapped (non-prelim): 140
length of query: 238
length of database: 18,247,518
effective HSP length: 99
effective length of query: 139
effective length of database: 14,498,784
effective search space: 2015330976
effective search space used: 2015330976
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.