Guide to the Human Genome
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Name: CDK5 Sequence: fasta or formatted (292aa) NCBI GI: 4826675
Description:

cyclin-dependent kinase 5

Referenced in:

Cyclins and Related Functions
Rho and Rac

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         16           1
 C cysteine            2.7          8           1
 D aspartate           7.2         21           4
 E glutamate           5.8         17           2
 F phenylalanine       5.1         15           1
 G glycine             5.5         16           1
 H histidine           2.4          7           1
 I isoleucine          3.8         11           1
 K lysine              7.9         23           2
 L leucine            13.7         40           2
 M methionine          1.4          4           1
 N asparagine          4.5         13           1
 P proline             6.5         19           2
 Q glutamine           3.1          9           1
 R arginine            5.5         16           1
 S serine              4.8         14           2
 T threonine           4.1         12           2
 V valine              6.2         18           2
 W tryptophan          1.0          3           1
 Y tyrosine            3.4         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cyclin-dependent kinase 5 
CDK3                  0.583   cyclin-dependent kinase 3 
CDK2                  0.562   cyclin-dependent kinase 2 isoform 1 
PCTK1                 0.543   PCTAIRE protein kinase 1 isoform 2 
PCTK1                 0.543   PCTAIRE protein kinase 1 isoform 1 
PCTK2                 0.542   PCTAIRE protein kinase 2 
PCTK3                 0.526   PCTAIRE protein kinase 3 isoform a 
PCTK3                 0.526   PCTAIRE protein kinase 3 isoform b 
PCTK3                 0.526   PCTAIRE protein kinase 3 isoform b 
CDC2                  0.521   cell division cycle 2 isoform 1 
CDC2                  0.517   cell division cycle 2 isoform 3 
PFTK1                 0.484   PFTAIRE protein kinase 1 
PFTK2                 0.452   PFTAIRE protein kinase 2 
CDK2                  0.448   cyclin-dependent kinase 2 isoform 2 
CDK7                  0.403   cyclin-dependent kinase 7 
CDC2L2                0.372   cell division cycle 2-like 2 isoform 4 
CDC2L2                0.372   cell division cycle 2-like 2 isoform 1 
CDC2L1                0.372   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.372   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.372   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.372   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.372   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.372   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDK6                  0.370   cyclin-dependent kinase 6 
CDK6                  0.370   cyclin-dependent kinase 6 
CDK10                 0.370   cyclin-dependent kinase 10 isoform a 
CCRK                  0.367   cell cycle related kinase isoform 3 
CRKRS                 0.344   Cdc2-related kinase, arginine/serine-rich isoform 2...
CRKRS                 0.344   Cdc2-related kinase, arginine/serine-rich isoform 1...
CDK4                  0.344   cyclin-dependent kinase 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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