Guide to the Human Genome
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Name: AQP5 Sequence: fasta or formatted (265aa) NCBI GI: 4502183
Description:

aquaporin 5

Referenced in:

Aquaporins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.8         34           2
 C cysteine            1.1          3           1
 D aspartate           1.1          3           1
 E glutamate           4.2         11           2
 F phenylalanine       6.4         17           2
 G glycine             8.7         23           2
 H histidine           1.1          3           1
 I isoleucine          6.4         17           2
 K lysine              2.6          7           2
 L leucine            13.6         36           2
 M methionine          1.9          5           1
 N asparagine          4.2         11           3
 P proline             4.9         13           1
 Q glutamine           3.0          8           1
 R arginine            3.8         10           2
 S serine              6.4         17           1
 T threonine           5.7         15           2
 V valine              8.3         22           2
 W tryptophan          1.5          4           1
 Y tyrosine            2.3          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   aquaporin 5 
AQP2                  0.654   aquaporin 2 
AQP6                  0.528   aquaporin 6 
MIP                   0.518   major intrinsic protein of lens fiber 
AQP4                  0.431   aquaporin 4 isoform b 
AQP4                  0.431   aquaporin 4 isoform a 
AQP1                  0.403   aquaporin 1 
AQP8                  0.211   aquaporin 8 
AQP9                  0.146   aquaporin 9 
AQP3                  0.123   aquaporin 3 
AQP7                  0.109   aquaporin 7 
AQP10                 0.067   aquaporin 10 
AQP12A                0.026   aquaporin 12A 
AQP12B                0.024   aquaporin 12B 
CYB5B                 0.014   cytochrome b5 outer mitochondrial membrane precursor...
LPL                   0.008   lipoprotein lipase precursor 
EIF3A                 0.006   eukaryotic translation initiation factor 3, subunit 1...
SLC43A3               0.006   solute carrier family 43, member 3 
SLC43A3               0.006   solute carrier family 43, member 3 
SLC43A3               0.006   solute carrier family 43, member 3 
GRIN2D                0.006   N-methyl-D-aspartate receptor subunit 2D precursor ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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