Guide to the Human Genome
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Name: AQP1 Sequence: fasta or formatted (269aa) NCBI GI: 37694062
Description:

aquaporin 1

Referenced in:

Aquaporins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.4         28           1
 C cysteine            1.5          4           1
 D aspartate           4.8         13           2
 E glutamate           2.2          6           2
 F phenylalanine       4.8         13           1
 G glycine            10.0         27           2
 H histidine           1.9          5           1
 I isoleucine          8.6         23           2
 K lysine              3.0          8           3
 L leucine            12.3         33           3
 M methionine          1.1          3           1
 N asparagine          4.1         11           2
 P proline             2.6          7           1
 Q glutamine           3.0          8           1
 R arginine            4.1         11           4
 S serine              8.6         23           2
 T threonine           5.6         15           2
 V valine              8.2         22           2
 W tryptophan          1.5          4           1
 Y tyrosine            1.9          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   aquaporin 1 
MIP                   0.414   major intrinsic protein of lens fiber 
AQP2                  0.408   aquaporin 2 
AQP5                  0.396   aquaporin 5 
AQP4                  0.380   aquaporin 4 isoform b 
AQP4                  0.380   aquaporin 4 isoform a 
AQP6                  0.352   aquaporin 6 
AQP8                  0.147   aquaporin 8 
AQP3                  0.103   aquaporin 3 
AQP9                  0.103   aquaporin 9 
AQP10                 0.080   aquaporin 10 
AQP7                  0.080   aquaporin 7 
AQP12A                0.020   aquaporin 12A 
AQP12B                0.018   aquaporin 12B 
EPC2                  0.016   enhancer of polycomb homolog 2 
FLJ21511              0.014   hypothetical protein LOC80157 
SLC16A13              0.010   monocarboxylate transporter 13 
SLC26A7               0.010   solute carrier family 26, member 7 isoform a 
SLC26A7               0.010   solute carrier family 26, member 7 isoform b 
SEZ6L2                0.008   seizure related 6 homolog (mouse)-like 2 isoform 3 ...
SEZ6L2                0.008   seizure related 6 homolog (mouse)-like 2 isoform 2 ...
KIAA1919              0.006   sodium-dependent glucose transporter 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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