Search of human proteins with 47777330

Search of human proteins with 47777330

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|47777330 hypothetical protein LOC115939 [Homo sapiens]
         (312 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|47777330 hypothetical protein LOC115939 [Homo sapiens]             642   0.0  
gi|239755855 PREDICTED: hypothetical protein [Homo sapiens]            35   0.066
gi|239750363 PREDICTED: hypothetical protein XP_002347382 [Homo ...    35   0.066
gi|239744667 PREDICTED: hypothetical protein XP_002343220 [Homo ...    35   0.066
gi|156119603 spermatogenesis and oogenesis specific basic helix-...    35   0.066
gi|51479177 iroquois homeobox protein 1 [Homo sapiens]                 35   0.11 
gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]                35   0.11 
gi|153070260 myristoylated alanine-rich protein kinase C substra...    34   0.19 
gi|83921609 hypothetical protein LOC127254 [Homo sapiens]              33   0.25 
gi|34482047 adaptor-related protein complex 3, beta 2 subunit [H...    33   0.42 
gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens]          33   0.42 
gi|4505835 polycystin 2 [Homo sapiens]                                 32   0.55 
gi|62548864 Rho guanine nucleotide exchange factor 10 [Homo sapi...    32   0.55 
gi|239748046 PREDICTED: hypothetical protein XP_002346501 [Homo ...    32   0.72 
gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]     31   1.2  
gi|188219577 ring finger protein 19B isoform a [Homo sapiens]          31   1.2  
gi|188219579 ring finger protein 19B isoform b [Homo sapiens]          31   1.2  
gi|148806902 TBC1 domain family, member 12 [Homo sapiens]              31   1.6  
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]           31   1.6  
gi|8922149 downstream neighbor of SON [Homo sapiens]                   31   1.6  
gi|157168349 F-box and leucine-rich repeat protein 19 [Homo sapi...    31   1.6  
gi|197313638 N-methyl-D-aspartate receptor subunit 2A isoform 2 ...    30   2.1  
gi|197313636 N-methyl-D-aspartate receptor subunit 2A isoform 1 ...    30   2.1  
gi|4504125 N-methyl-D-aspartate receptor subunit 2A isoform 1 pr...    30   2.1  
gi|239744421 PREDICTED: hypothetical protein [Homo sapiens]            30   2.1  
gi|149192855 HLA-B associated transcript 2-like [Homo sapiens]         30   2.1  
gi|38176300 nestin [Homo sapiens]                                      30   2.8  
gi|21361272 myeloid/lymphoid or mixed-lineage leukemia (trithora...    30   2.8  
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]            30   2.8  
gi|169171388 PREDICTED: hypothetical protein [Homo sapiens]            30   2.8  

>gi|47777330 hypothetical protein LOC115939 [Homo sapiens]
          Length = 312

 Score =  642 bits (1655), Expect = 0.0
 Identities = 312/312 (100%), Positives = 312/312 (100%)

Query: 1   MGRRRAARGPGAEGGRPRHLPTRSLEAFAEEVGAALQASVEPGAADGEGGPGPAALPCTL 60
           MGRRRAARGPGAEGGRPRHLPTRSLEAFAEEVGAALQASVEPGAADGEGGPGPAALPCTL
Sbjct: 1   MGRRRAARGPGAEGGRPRHLPTRSLEAFAEEVGAALQASVEPGAADGEGGPGPAALPCTL 60

Query: 61  AMWELGHCDPRRCTGRKLARLGLVRCLRLGHRFGGLVLSPVGKQYASPADRQLVAQSGVA 120
           AMWELGHCDPRRCTGRKLARLGLVRCLRLGHRFGGLVLSPVGKQYASPADRQLVAQSGVA
Sbjct: 61  AMWELGHCDPRRCTGRKLARLGLVRCLRLGHRFGGLVLSPVGKQYASPADRQLVAQSGVA 120

Query: 121 VIDCSWARLDETPFGKMRGSHLRLLPYLVAANPVNYGRPYRLSCVEAFAATFCIVGFPDL 180
           VIDCSWARLDETPFGKMRGSHLRLLPYLVAANPVNYGRPYRLSCVEAFAATFCIVGFPDL
Sbjct: 121 VIDCSWARLDETPFGKMRGSHLRLLPYLVAANPVNYGRPYRLSCVEAFAATFCIVGFPDL 180

Query: 181 AVILLRKFKWGKGFLDLNRQLLDKYAACGSPEEVLQAEQEFLANAKESPQEEEIDPFDVD 240
           AVILLRKFKWGKGFLDLNRQLLDKYAACGSPEEVLQAEQEFLANAKESPQEEEIDPFDVD
Sbjct: 181 AVILLRKFKWGKGFLDLNRQLLDKYAACGSPEEVLQAEQEFLANAKESPQEEEIDPFDVD 240

Query: 241 SGREFGNPNRPVASTRLPSDTDDSDASEDPGPGAERGGASSSCCEEEQTQGRGAEARAPA 300
           SGREFGNPNRPVASTRLPSDTDDSDASEDPGPGAERGGASSSCCEEEQTQGRGAEARAPA
Sbjct: 241 SGREFGNPNRPVASTRLPSDTDDSDASEDPGPGAERGGASSSCCEEEQTQGRGAEARAPA 300

Query: 301 EVWKGIKKRQRD 312
           EVWKGIKKRQRD
Sbjct: 301 EVWKGIKKRQRD 312


>gi|239755855 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 250

 Score = 35.4 bits (80), Expect = 0.066
 Identities = 37/102 (36%), Positives = 42/102 (41%), Gaps = 25/102 (24%)

Query: 215 LQAEQEFLANAKES---PQEEEIDPFDVDSGREFGNPNRPVASTRLPSDTDDSDASEDPG 271
           L+ E EF     E+    QEEE  P    + R  G   RP    R   DT D D  ED  
Sbjct: 13  LRTELEFRGGGGEARLESQEEETIPAAPPAPRLRGAAERP----RRSRDTWDGD--EDTE 66

Query: 272 PGAERGGASS--------------SCCEEEQTQ--GRGAEAR 297
           PG   GG +S              SC EEE+    GRGAE R
Sbjct: 67  PGEACGGRTSRTASLVSGLLNELYSCTEEEEAAGGGRGAEGR 108


>gi|239750363 PREDICTED: hypothetical protein XP_002347382 [Homo
           sapiens]
          Length = 250

 Score = 35.4 bits (80), Expect = 0.066
 Identities = 37/102 (36%), Positives = 42/102 (41%), Gaps = 25/102 (24%)

Query: 215 LQAEQEFLANAKES---PQEEEIDPFDVDSGREFGNPNRPVASTRLPSDTDDSDASEDPG 271
           L+ E EF     E+    QEEE  P    + R  G   RP    R   DT D D  ED  
Sbjct: 13  LRTELEFRGGGGEARLESQEEETIPAAPPAPRLRGAAERP----RRSRDTWDGD--EDTE 66

Query: 272 PGAERGGASS--------------SCCEEEQTQ--GRGAEAR 297
           PG   GG +S              SC EEE+    GRGAE R
Sbjct: 67  PGEACGGRTSRTASLVSGLLNELYSCTEEEEAAGGGRGAEGR 108


>gi|239744667 PREDICTED: hypothetical protein XP_002343220 [Homo
           sapiens]
          Length = 250

 Score = 35.4 bits (80), Expect = 0.066
 Identities = 37/102 (36%), Positives = 42/102 (41%), Gaps = 25/102 (24%)

Query: 215 LQAEQEFLANAKES---PQEEEIDPFDVDSGREFGNPNRPVASTRLPSDTDDSDASEDPG 271
           L+ E EF     E+    QEEE  P    + R  G   RP    R   DT D D  ED  
Sbjct: 13  LRTELEFRGGGGEARLESQEEETIPAAPPAPRLRGAAERP----RRSRDTWDGD--EDTE 66

Query: 272 PGAERGGASS--------------SCCEEEQTQ--GRGAEAR 297
           PG   GG +S              SC EEE+    GRGAE R
Sbjct: 67  PGEACGGRTSRTASLVSGLLNELYSCTEEEEAAGGGRGAEGR 108


>gi|156119603 spermatogenesis and oogenesis specific basic
           helix-loop-helix 1 isoform a [Homo sapiens]
          Length = 387

 Score = 35.4 bits (80), Expect = 0.066
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 14/72 (19%)

Query: 9   GPGAEGGRPRHLPTRSLEAFAEEVGAALQASVE--------------PGAADGEGGPGPA 54
           GP A G  P   P +     A+E G+AL + V+              PG+ +G GG GPA
Sbjct: 268 GPLAMGAAPLGEPAKEDPMLAQEAGSALGSDVDDGTSFLLTAGPSSWPGSLEGRGGSGPA 327

Query: 55  ALPCTLAMWELG 66
             P   +  ++G
Sbjct: 328 WAPAESSPLDVG 339


>gi|51479177 iroquois homeobox protein 1 [Homo sapiens]
          Length = 480

 Score = 34.7 bits (78), Expect = 0.11
 Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 8/59 (13%)

Query: 6  AARGPGAEGG-RPRHLPTRSLEAFAEEVGAALQASVEPGAADGEGGPGPAALPCTLAMW 63
          +A GPGA GG RP  L        A    AA  +S  PGAA+  GG G AA+   L M+
Sbjct: 13 SAAGPGAYGGERPGVLA-------AAAAAAAAASSGRPGAAELGGGAGAAAVTSVLGMY 64


>gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]
          Length = 2303

 Score = 34.7 bits (78), Expect = 0.11
 Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 2    GRRRAARGPGAEGGRPRHLPTRSLEAFAEEVGAALQASVEPGAADGEGGPGPAALPCTLA 61
            G RR   GP   G RPR    + LE   E +GAA+ A +   A+     PG  ALP  + 
Sbjct: 1317 GHRRREEGPAPTGSRPRGAADQELELLRECLGAAVPARLRKVAS--ALVPGRRALPVPVY 1374

Query: 62   M 62
            M
Sbjct: 1375 M 1375


>gi|153070260 myristoylated alanine-rich protein kinase C substrate
           [Homo sapiens]
          Length = 332

 Score = 33.9 bits (76), Expect = 0.19
 Identities = 30/112 (26%), Positives = 44/112 (39%), Gaps = 16/112 (14%)

Query: 206 AACGSPEEVLQAEQEFLANAKESPQEEEIDPFDVDSGREFG---------NPNRPVASTR 256
           AA G  +E         A A  +  E+   P +  +  E G          P     +  
Sbjct: 188 AAEGGKDEAAGGAAAAAAEAGAASGEQAAAPGEEAAAGEEGAAGGDPQEAKPQEAAVAPE 247

Query: 257 LPSDTDDSDASEDPGP----GAERGGASSSCCEEEQTQGRGA---EARAPAE 301
            P  +D++ A+E+P       AE  GAS++ CE     G GA   +  APAE
Sbjct: 248 KPPASDETKAAEEPSKVEEKKAEEAGASAAACEAPSAAGPGAPPEQEAAPAE 299


>gi|83921609 hypothetical protein LOC127254 [Homo sapiens]
          Length = 1530

 Score = 33.5 bits (75), Expect = 0.25
 Identities = 35/123 (28%), Positives = 46/123 (37%), Gaps = 30/123 (24%)

Query: 209  GSPEEVLQAEQEFL-------------ANAKESPQEEEIDPFDVDSGREFGNPNRPVAS- 254
            GSPEE   A++ FL             A A      +EI P ++D  RE     RP  S 
Sbjct: 1011 GSPEEGSLAKEAFLCKEDVEGEEMVTEAEANREDDRKEILPKELDLARERRKAERPKTSL 1070

Query: 255  ----------TRLPSDTDDSDASEDPGPGAERGGASSSCCEEEQTQ------GRGAEARA 298
                      TR  +  D+    E+    AE G   +    EE+T+      G  AE  A
Sbjct: 1071 RKTDSEREEVTRANALKDEDAFKEEQKLKAEEGETETEVRAEEETKAPPNEMGSDAENEA 1130

Query: 299  PAE 301
            P E
Sbjct: 1131 PVE 1133


>gi|34482047 adaptor-related protein complex 3, beta 2 subunit [Homo
           sapiens]
          Length = 1082

 Score = 32.7 bits (73), Expect = 0.42
 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 1/91 (1%)

Query: 220 EFLANAKESPQEEEIDPFDVDSGREFGNPNRPVASTRLPSDTDDSDASEDPGPGAERGGA 279
           E+   +    ++E+  PF  DS  E G P     S        DS +S + G G     +
Sbjct: 660 EWTKCSNREKRKEKEKPFYSDSEGESG-PTESADSDPESESESDSKSSSESGSGESSSES 718

Query: 280 SSSCCEEEQTQGRGAEARAPAEVWKGIKKRQ 310
            +   +E++ +GRG+E+    E  K   K++
Sbjct: 719 DNEDQDEDEEKGRGSESEQSEEDGKRKTKKK 749


>gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens]
          Length = 796

 Score = 32.7 bits (73), Expect = 0.42
 Identities = 19/67 (28%), Positives = 31/67 (46%)

Query: 246 GNPNRPVASTRLPSDTDDSDASEDPGPGAERGGASSSCCEEEQTQGRGAEARAPAEVWKG 305
           G P     S+   S T  S A    G G +R G+ SS  +E + + +   A A AE+ + 
Sbjct: 301 GTPGVSATSSSASSSTSSSVAEVGVGAGGKRPGSVSSTDQERELKEKQRNAEALAELSES 360

Query: 306 IKKRQRD 312
           ++ R  +
Sbjct: 361 LRNRAEE 367


>gi|4505835 polycystin 2 [Homo sapiens]
          Length = 968

 Score = 32.3 bits (72), Expect = 0.55
 Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 12/109 (11%)

Query: 185 LRKFKWGKGFLDLNRQ-LLDKYAACGSPEEVLQAEQEFLANAKESPQEEEIDPFDVDSGR 243
           LR+   GKG  D   + +  KY   G  E      Q+   + ++  ++ ++D   +    
Sbjct: 741 LRQDLKGKGHTDAEIEAIFTKYDQDGDQELTEHEHQQMRDDLEKEREDLDLDHSSLP--- 797

Query: 244 EFGNPNRPVASTRLPSDTDDS--DASEDPGPGAERGGASSSCCEEEQTQ 290
                 RP++S   P   DDS  D  ED G  + R G+ SS    E+ Q
Sbjct: 798 ------RPMSSRSFPRSLDDSEEDDDEDSGHSSRRRGSISSGVSYEEFQ 840


>gi|62548864 Rho guanine nucleotide exchange factor 10 [Homo
           sapiens]
          Length = 1344

 Score = 32.3 bits (72), Expect = 0.55
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 230 QEEEIDPFDVDSGREFGNPNRPVASTRLPSDTDDSDASEDPGP-GAERGGASSSCCEEEQ 288
           +EEE + FD DSG E    +R   S     +T  + ASE P P G E G  + +    E 
Sbjct: 24  EEEEGEQFDFDSGDEIPEADRQAPSA---PETGGAGASEAPAPTGGEDGAGAETTPVAEP 80

Query: 289 TQ 290
           T+
Sbjct: 81  TK 82


>gi|239748046 PREDICTED: hypothetical protein XP_002346501 [Homo
           sapiens]
          Length = 411

 Score = 32.0 bits (71), Expect = 0.72
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 9   GPGAEGGRPRHLPTRSLEAFAEEVGAALQASVEPGAADGEGGPGPAALPCTLAMWELGHC 68
           G G + GR    P   L+A  +E  + L  S  PG+A+  G  G   L C+   W  G C
Sbjct: 156 GEGTQAGRVAGCPKAQLQA--QESPSPLTPSGGPGSAEERGLGGLRGLECSRLGWGGGRC 213


>gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]
          Length = 1712

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 2   GRRRAARGPGAEGGRPRHLPTRSLEAFAEEVGAALQASVEPGAADGEGGPGPAALP 57
           G R+ A  PG  GG P+ LP   L       GA     + PG A  +GGPGP  LP
Sbjct: 671 GDRQEAIQPGCIGG-PKGLP--GLPGPPGPTGAKGLRGI-PGFAGADGGPGPRGLP 722


>gi|188219577 ring finger protein 19B isoform a [Homo sapiens]
          Length = 732

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 12  AEGGRPRHLPTRSLEAFAEEVGAALQASVEPGAADGE----GGPGPAALPCTLAMWEL 65
           A+G  P  LP    E  AE    A  A+ EPG  D E    GGPG   + C L +  L
Sbjct: 72  AQGPPPEALPA---EPAAEAEAEAAAAAAEPGFDDEEAAEGGGPGAEEVECPLCLVRL 126


>gi|188219579 ring finger protein 19B isoform b [Homo sapiens]
          Length = 587

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 12  AEGGRPRHLPTRSLEAFAEEVGAALQASVEPGAADGE----GGPGPAALPCTLAMWEL 65
           A+G  P  LP    E  AE    A  A+ EPG  D E    GGPG   + C L +  L
Sbjct: 72  AQGPPPEALPA---EPAAEAEAEAAAAAAEPGFDDEEAAEGGGPGAEEVECPLCLVRL 126


>gi|148806902 TBC1 domain family, member 12 [Homo sapiens]
          Length = 775

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 8/77 (10%)

Query: 227 ESPQEEEIDPFDVDSGREFGNP-NRPVASTRLPSDTDDSDASEDPGPGAERGGA-SSSCC 284
           E P +E+ D     S  ++ +P   P+ S  L +    +DA E  G G++ G + +SSC 
Sbjct: 175 EGPGDEDAD--GAGSPSDWASPLEDPLRSCCLVA----ADAQEPEGAGSDSGDSPASSCS 228

Query: 285 EEEQTQGRGAEARAPAE 301
             E ++ RG  A  P E
Sbjct: 229 SSEDSEQRGVGAGGPEE 245


>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
          Length = 1006

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 236 PFDVDSGREFGNPNRPVASTRLPSDTDDSDASED-PGPGAERGGASSSCCEEEQTQGRGA 294
           P D  + R    P  P  +   P    + DA    PGPGA   GA  +   E+   GRG+
Sbjct: 606 PEDAPAARRPKAPPGPARAP--PGQPAEPDAPRSSPGPGAREEGAGGAATPEDGAGGRGS 663

Query: 295 E 295
           E
Sbjct: 664 E 664


>gi|8922149 downstream neighbor of SON [Homo sapiens]
          Length = 566

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 19/53 (35%), Positives = 22/53 (41%)

Query: 3  RRRAARGPGAEGGRPRHLPTRSLEAFAEEVGAALQASVEPGAADGEGGPGPAA 55
          RR+ AR  GA    PR L   +    A   G  L+     G   G  G GPAA
Sbjct: 22 RRKRARSRGAAASPPRELTEPAARRAALVAGLPLRPFPAAGGRGGGSGGGPAA 74


>gi|157168349 F-box and leucine-rich repeat protein 19 [Homo
           sapiens]
          Length = 694

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 13/103 (12%)

Query: 205 YAAC--GSPEEVLQAEQEFLANAK------ESPQEEEIDPFDVDSGREFGNPNRPVASTR 256
           +++C  G P E  +  +  LA+A+       SPQ E+++ F          P+   +S+ 
Sbjct: 270 FSSCHPGLPPENWEKPKPPLASAEGPAVPSPSPQREKLERFKRMCQLLERVPDTSSSSSD 329

Query: 257 LPSDTDDSDAS--EDPGPGAERGG---ASSSCCEEEQTQGRGA 294
             SD+D S  S  ED  PG  R G   A  S  E+E   GR A
Sbjct: 330 SDSDSDSSGTSLSEDEAPGEARNGRRPARGSSGEKENRGGRRA 372


>gi|197313638 N-methyl-D-aspartate receptor subunit 2A isoform 2
            precursor [Homo sapiens]
          Length = 1281

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 11/88 (12%)

Query: 196  DLNRQLLDKYAACGSPEEVLQAEQEFLANAKESPQEEEIDPFDVDSGREFG---NPNRPV 252
            +  R +  KY     P++  + E+ +L     SP+++    + +D  +E G   +P + V
Sbjct: 1085 NFKRSVASKY-----PKDCSEVERTYLKTKSSSPRDKI---YTIDGEKEPGFHLDPPQFV 1136

Query: 253  ASTRLPSDTDDSDASEDPGPGAERGGAS 280
             +  LP + D  D  +DP     +G ++
Sbjct: 1137 ENVTLPENVDFPDPYQDPSENFRKGDST 1164


>gi|197313636 N-methyl-D-aspartate receptor subunit 2A isoform 1
            precursor [Homo sapiens]
          Length = 1464

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 11/88 (12%)

Query: 196  DLNRQLLDKYAACGSPEEVLQAEQEFLANAKESPQEEEIDPFDVDSGREFG---NPNRPV 252
            +  R +  KY     P++  + E+ +L     SP+++    + +D  +E G   +P + V
Sbjct: 1085 NFKRSVASKY-----PKDCSEVERTYLKTKSSSPRDKI---YTIDGEKEPGFHLDPPQFV 1136

Query: 253  ASTRLPSDTDDSDASEDPGPGAERGGAS 280
             +  LP + D  D  +DP     +G ++
Sbjct: 1137 ENVTLPENVDFPDPYQDPSENFRKGDST 1164


>gi|4504125 N-methyl-D-aspartate receptor subunit 2A isoform 1
            precursor [Homo sapiens]
          Length = 1464

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 11/88 (12%)

Query: 196  DLNRQLLDKYAACGSPEEVLQAEQEFLANAKESPQEEEIDPFDVDSGREFG---NPNRPV 252
            +  R +  KY     P++  + E+ +L     SP+++    + +D  +E G   +P + V
Sbjct: 1085 NFKRSVASKY-----PKDCSEVERTYLKTKSSSPRDKI---YTIDGEKEPGFHLDPPQFV 1136

Query: 253  ASTRLPSDTDDSDASEDPGPGAERGGAS 280
             +  LP + D  D  +DP     +G ++
Sbjct: 1137 ENVTLPENVDFPDPYQDPSENFRKGDST 1164


>gi|239744421 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 252

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 33/103 (32%), Positives = 43/103 (41%), Gaps = 18/103 (17%)

Query: 42  PGAADGEGGPGPAALPCTLAMWELGHCDPRRCTGRKLARLGLVRCLRLGHRFGGLVLSPV 101
           P   +  GGPGP   P  L         PRR  G + AR G  R +  G+  G      V
Sbjct: 30  PAQREAGGGPGPGDQPLLLC------SVPRRSLGVRGAR-GGARAVSAGNPRG------V 76

Query: 102 GKQYASPADRQLVAQSGVAVIDCS--W---ARLDETPFGKMRG 139
           G+    P  ++   +SG AV + S  W   ARL    +G  RG
Sbjct: 77  GRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERG 119


>gi|149192855 HLA-B associated transcript 2-like [Homo sapiens]
          Length = 2229

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 11/87 (12%)

Query: 226  KESPQEEEIDPFDVDSGREFGN--PNRPVASTRLPSDTDDSDAS---------EDPGPGA 274
            K   +E+E++    + G E       +  + T    + +++DAS         ED GPG 
Sbjct: 951  KVEDKEKELEKIKQELGEESTRLAKEKEQSPTAEKDEDEENDASLANSSTTTLEDKGPGH 1010

Query: 275  ERGGASSSCCEEEQTQGRGAEARAPAE 301
               G  ++  EEE+   +  EAR P E
Sbjct: 1011 ATFGREATKFEEEEKPDKAWEARPPRE 1037


>gi|38176300 nestin [Homo sapiens]
          Length = 1621

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 14/70 (20%)

Query: 206  AACGSPEEVLQAEQEFLANAKESPQEEEIDPFDVDSGREFGNPNRPVASTRLPSDTDDSD 265
            A  G+P+  L+ E +   +A+ S  EEE DP  ++               ++P   +   
Sbjct: 1476 AVAGAPKTALETESQ--DSAEPSGSEEESDPVSLER------------EDKVPGPLEIPS 1521

Query: 266  ASEDPGPGAE 275
              ED GPGA+
Sbjct: 1522 GMEDAGPGAD 1531


>gi|21361272 myeloid/lymphoid or mixed-lineage leukemia (trithorax
           homolog, Drosophila); translocated to, 1 [Homo sapiens]
          Length = 559

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 26/93 (27%), Positives = 35/93 (37%), Gaps = 16/93 (17%)

Query: 222 LANAKESPQEEEIDPFDVDSGREFGNPNRPVASTRLPSDTDDSDASED------------ 269
           L +  E  Q EE D  D  SG E      P   +RL     +SD S D            
Sbjct: 402 LRSMVEDLQSEESDEDDSSSGEEAAGKTNPGRDSRLSFSDSESDNSADSSLPSREPPPPQ 461

Query: 270 --PGPGAERGGASS--SCCEEEQTQGRGAEARA 298
             P P ++  G  S  SC + E+   +G   +A
Sbjct: 462 KPPPPNSKVSGRRSPESCSKPEKILKKGTYDKA 494


>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 819

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 2   GRRRAARGPGAEGGRPRHLPTRSLEAFAEEVGAALQASVEPGAADGEGGPGPAALPCTLA 61
           G+ R  +  G    + R     +  A A+  GAA     E  AA G GG GP +L     
Sbjct: 259 GKSRVGKSRGGGDKKLRRQGQNAALAGAKRRGAATAG--EKPAAKGRGGRGPKSLGGQNP 316

Query: 62  MWELGHCDPRR 72
            W  G   PRR
Sbjct: 317 RWGRGGKKPRR 327


>gi|169171388 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 154

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 253 ASTRLPSDTDDSDASEDPG-PGAERGGASSSCCEEEQTQGRGAEARAPA 300
           A+ R  + T    A   PG  G ERG  S+S  E E+  GRG  AR+ A
Sbjct: 101 AAARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSA 149


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.137    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,741,206
Number of Sequences: 37866
Number of extensions: 806095
Number of successful extensions: 3637
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 3581
Number of HSP's gapped (non-prelim): 120
length of query: 312
length of database: 18,247,518
effective HSP length: 102
effective length of query: 210
effective length of database: 14,385,186
effective search space: 3020889060
effective search space used: 3020889060
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.