Guide to the Human Genome
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Name: TBCA Sequence: fasta or formatted (108aa) NCBI GI: 4759212
Description:

tubulin-specific chaperone a

Referenced in:

Tubulins and Microtubules

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3          9           2
 C cysteine            0.9          1           1
 D aspartate           6.5          7           1
 E glutamate          17.6         19           2
 F phenylalanine       0.0          0           0
 G glycine             1.9          2           1
 H histidine           0.0          0           0
 I isoleucine          6.5          7           1
 K lysine             13.0         14           2
 L leucine             9.3         10           1
 M methionine          4.6          5           2
 N asparagine          1.9          2           1
 P proline             1.9          2           1
 Q glutamine           6.5          7           2
 R arginine            8.3          9           2
 S serine              1.9          2           1
 T threonine           0.9          1           1
 V valine              6.5          7           2
 W tryptophan          0.0          0           0
 Y tyrosine            3.7          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tubulin-specific chaperone a 
LOC727832             0.065   golgi autoantigen, golgin subfamily a-like 
LOC283767             0.065   golgi autoantigen, golgin subfamily a-like 
BAT2D1                0.065   HBxAg transactivated protein 2 
LOC440243             0.060   PREDICTED: Putative golgin subfamily A member 6-lik...
MYO10                 0.060   myosin X 
GOLGB1                0.060   golgi autoantigen, golgin subfamily b, macrogolgin ...
HOMER2                0.054   homer 2 isoform 4 
HOMER2                0.054   homer 2 isoform 3 
HAP1                  0.054   huntingtin-associated protein 1 isoform 4 
HAP1                  0.054   huntingtin-associated protein 1 isoform 3 
HAP1                  0.054   huntingtin-associated protein 1 isoform 2 
LOC645202             0.049   PREDICTED: hypothetical protein LOC645202 
KIAA1407              0.049   hypothetical protein LOC57577 
KRT19                 0.043   keratin 19 
MNS1                  0.043   meiosis-specific nuclear structural 1 
FLJ44817              0.043   similar to pleckstrin homology domain protein (5V32...
ASPH                  0.043   aspartate beta-hydroxylase isoform d 
ASPH                  0.043   aspartate beta-hydroxylase isoform e 
LOC283685             0.043   PREDICTED: golgi autoantigen, golgin subfamily a-li...
ITSN1                 0.043   intersectin 1 isoform ITSN-s 
ITSN1                 0.043   intersectin 1 isoform ITSN-l 
CCDC88A               0.043   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.043   coiled-coil domain containing 88A isoform 1 
SFRS17A               0.043   DNA segment on chromosome X and Y (unique) 155 expre...
MAP7D2                0.043   MAP7 domain containing 2 
AKD1                  0.043   adenylate kinase domain containing 1 isoform 1 [Hom...
LOC283685             0.043   PREDICTED: golgi autoantigen, golgin subfamily a-li...
STMN1                 0.038   stathmin 1 isoform a 
STMN1                 0.038   stathmin 1 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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