Guide to the Human Genome
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Name: STX3 Sequence: fasta or formatted (289aa) NCBI GI: 4759184
Description:

syntaxin 3

Referenced in:

ER, Golgi, and the Secretory Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         16           1
 C cysteine            0.0          0           0
 D aspartate           7.3         21           3
 E glutamate          11.8         34           2
 F phenylalanine       2.4          7           2
 G glycine             3.1          9           1
 H histidine           2.4          7           1
 I isoleucine         10.0         29           4
 K lysine              9.7         28           2
 L leucine             9.7         28           2
 M methionine          3.5         10           1
 N asparagine          3.8         11           2
 P proline             1.4          4           1
 Q glutamine           4.5         13           1
 R arginine            5.5         16           1
 S serine              6.9         20           2
 T threonine           4.8         14           2
 V valine              6.6         19           3
 W tryptophan          0.0          0           0
 Y tyrosine            1.0          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   syntaxin 3 
STX2                  0.619   syntaxin 2 isoform 2 
STX1A                 0.611   syntaxin 1A (brain) 
STX2                  0.606   syntaxin 2 isoform 1 
STX1B                 0.575   syntaxin 1B 
STX4                  0.358   syntaxin 4 
STX11                 0.227   syntaxin 11 
STX19                 0.221   syntaxin 19 
STX12                 0.137   syntaxin 12 
STX7                  0.137   syntaxin 7 
STX16                 0.109   syntaxin 16 isoform b 
STX16                 0.105   syntaxin 16 isoform a 
STX16                 0.105   syntaxin 16 isoform d 
STX16                 0.105   syntaxin 16 isoform c 
TSNARE1               0.053   t-SNARE domain containing 1 
STX5                  0.044   syntaxin 5 
MYH10                 0.040   myosin, heavy polypeptide 10, non-muscle 
TEX9                  0.040   testis expressed 9 
GOLGA4                0.038   golgi autoantigen, golgin subfamily a, 4 
C14orf145             0.038   hypothetical protein LOC145508 
STX10                 0.036   syntaxin 10 
MYH15                 0.032   myosin, heavy polypeptide 15 
CNTLN                 0.032   centlein isoform 1 
CNTLN                 0.032   centlein isoform 2 
DST                   0.032   dystonin isoform 1e precursor 
TPR                   0.032   nuclear pore complex-associated protein TPR 
CGNL1                 0.032   cingulin-like 1 
EFCAB5                0.030   EF-hand calcium binding domain 5 isoform a 
MYH11                 0.029   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.029   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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