Guide to the Human Genome
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Name: STX11 Sequence: fasta or formatted (287aa) NCBI GI: 33667038
Description:

syntaxin 11

Referenced in:

ER, Golgi, and the Secretory Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         25           2
 C cysteine            2.8          8           2
 D aspartate           8.0         23           2
 E glutamate           8.7         25           2
 F phenylalanine       3.1          9           1
 G glycine             3.1          9           1
 H histidine           2.8          8           1
 I isoleucine          5.6         16           1
 K lysine              7.0         20           1
 L leucine            10.1         29           2
 M methionine          2.8          8           1
 N asparagine          3.8         11           1
 P proline             1.7          5           1
 Q glutamine           7.3         21           2
 R arginine            8.4         24           2
 S serine              4.9         14           2
 T threonine           3.1          9           1
 V valine              5.6         16           1
 W tryptophan          0.3          1           1
 Y tyrosine            2.1          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   syntaxin 11 
STX19                 0.352   syntaxin 19 
STX1B                 0.273   syntaxin 1B 
STX2                  0.264   syntaxin 2 isoform 1 
STX2                  0.264   syntaxin 2 isoform 2 
STX1A                 0.236   syntaxin 1A (brain) 
STX3                  0.218   syntaxin 3 
STX4                  0.170   syntaxin 4 
STX12                 0.053   syntaxin 12 
STX7                  0.046   syntaxin 7 
STX16                 0.042   syntaxin 16 isoform a 
STX16                 0.042   syntaxin 16 isoform d 
STX16                 0.042   syntaxin 16 isoform c 
STX16                 0.042   syntaxin 16 isoform b 
TSNARE1               0.026   t-SNARE domain containing 1 
CENPF                 0.026   centromere protein F 
ODC1                  0.022   ornithine decarboxylase 1 
NDEL1                 0.022   nudE nuclear distribution gene E homolog (A. nidulan...
NDEL1                 0.022   nudE nuclear distribution gene E homolog (A. nidulan...
KTN1                  0.020   kinectin 1 isoform b 
KTN1                  0.020   kinectin 1 isoform a 
KTN1                  0.020   kinectin 1 isoform a 
AKAP9                 0.018   A-kinase anchor protein 9 isoform 2 
TRNP1                 0.018   TMF regulated nuclear protein 
DLG5                  0.016   discs large homolog 5 
FILIP1L               0.016   filamin A interacting protein 1-like isoform 3 [Hom...
FILIP1L               0.016   filamin A interacting protein 1-like isoform 1 [Hom...
GOLGA4                0.016   golgi autoantigen, golgin subfamily a, 4 
CYTSB                 0.015   spectrin domain with coiled-coils 1 NSP5a3b 
CYTSB                 0.015   spectrin domain with coiled-coils 1 NSP5a3a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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