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Search of human proteins with 4759066
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4759066 sodium channel, voltage-gated, type II, beta [Homo
sapiens]
(215 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4759066 sodium channel, voltage-gated, type II, beta [Homo sa... 444 e-125
gi|21536337 myelin protein zero-like 2 precursor [Homo sapiens] 92 3e-19
gi|5032247 myelin protein zero-like 2 precursor [Homo sapiens] 92 3e-19
gi|28372555 sodium channel, voltage-gated, type IV, beta isoform... 82 3e-16
gi|4506357 myelin protein zero-like 1 isoform a [Homo sapiens] 69 4e-12
gi|46358426 myelin protein zero-like 1 isoform b [Homo sapiens] 67 9e-12
gi|4505243 myelin protein zero [Homo sapiens] 66 3e-11
gi|38093645 myelin protein zero-like 3 [Homo sapiens] 65 6e-11
gi|215272334 sodium channel, voltage-gated, type IV, beta isofor... 56 3e-08
gi|148664224 adhesion molecule, interacts with CXADR antigen 1 i... 53 2e-07
gi|148664207 adhesion molecule, interacts with CXADR antigen 1 i... 53 2e-07
gi|32699028 V-set and immunoglobulin domain containing 1 [Homo s... 53 2e-07
gi|62865876 immunoglobulin superfamily, member 11 isoform b [Hom... 52 5e-07
gi|62865874 immunoglobulin superfamily, member 11 isoform a [Hom... 51 6e-07
gi|21361429 V-set and immunoglobulin domain containing 2 [Homo s... 46 3e-05
gi|13489095 sialoadhesin precursor [Homo sapiens] 45 6e-05
gi|42560233 poliovirus receptor-related 1 isoform 3 [Homo sapiens] 43 2e-04
gi|42560231 poliovirus receptor-related 1 isoform 2 [Homo sapiens] 43 2e-04
gi|42560237 poliovirus receptor-related 1 isoform 1 [Homo sapiens] 43 2e-04
gi|4503173 coxsackie virus and adenovirus receptor precursor [Ho... 42 5e-04
gi|9055238 voltage-gated sodium channel beta-3 subunit precursor... 40 0.001
gi|93587332 voltage-gated sodium channel beta-3 subunit precurso... 40 0.001
gi|61966777 V-set and immunoglobulin domain containing 8 [Homo s... 40 0.002
gi|226529863 T-cell immunoglobulin and mucin domain containing 4... 39 0.003
gi|226498466 T-cell immunoglobulin and mucin domain containing 4... 39 0.003
gi|239753613 PREDICTED: similar to hCG1657343 [Homo sapiens] 38 0.006
gi|239748209 PREDICTED: similar to hCG1657343 [Homo sapiens] 38 0.006
gi|239742107 PREDICTED: similar to hCG1657343 [Homo sapiens] 38 0.006
gi|222136611 poliovirus receptor-related 4 [Homo sapiens] 38 0.006
gi|5031561 transmembrane glycoprotein A33 precursor [Homo sapiens] 38 0.006
>gi|4759066 sodium channel, voltage-gated, type II, beta [Homo
sapiens]
Length = 215
Score = 444 bits (1142), Expect = e-125
Identities = 215/215 (100%), Positives = 215/215 (100%)
Query: 1 MHRDAWLPRPAFSLTGLSLFFSLVPPGRSMEVTVPATLNVLNGSDARLPCTFNSCYTVNH 60
MHRDAWLPRPAFSLTGLSLFFSLVPPGRSMEVTVPATLNVLNGSDARLPCTFNSCYTVNH
Sbjct: 1 MHRDAWLPRPAFSLTGLSLFFSLVPPGRSMEVTVPATLNVLNGSDARLPCTFNSCYTVNH 60
Query: 61 KQFSLNWTYQECNNCSEEMFLQFRMKIINLKLERFQDRVEFSGNPSKYDVSVMLRNVQPE 120
KQFSLNWTYQECNNCSEEMFLQFRMKIINLKLERFQDRVEFSGNPSKYDVSVMLRNVQPE
Sbjct: 61 KQFSLNWTYQECNNCSEEMFLQFRMKIINLKLERFQDRVEFSGNPSKYDVSVMLRNVQPE 120
Query: 121 DEGIYNCYIMNPPDRHRGHGKIHLQVLMEEPPERDSTVAVIVGASVGGFLAVVILVLMVV 180
DEGIYNCYIMNPPDRHRGHGKIHLQVLMEEPPERDSTVAVIVGASVGGFLAVVILVLMVV
Sbjct: 121 DEGIYNCYIMNPPDRHRGHGKIHLQVLMEEPPERDSTVAVIVGASVGGFLAVVILVLMVV 180
Query: 181 KCVRRKKEQKLSTDDLKTEEEGKTDGEGNPDDGAK 215
KCVRRKKEQKLSTDDLKTEEEGKTDGEGNPDDGAK
Sbjct: 181 KCVRRKKEQKLSTDDLKTEEEGKTDGEGNPDDGAK 215
>gi|21536337 myelin protein zero-like 2 precursor [Homo sapiens]
Length = 215
Score = 92.0 bits (227), Expect = 3e-19
Identities = 56/201 (27%), Positives = 104/201 (51%), Gaps = 6/201 (2%)
Query: 9 RPAFSLTGLSLFFSLVPPGRSMEVTVPATLNVLNGSDARLPCTFNSCYTVNHKQFSLNWT 68
R L G+ L + + P ++E+ L +NG+DARL CTF+S V ++ W
Sbjct: 8 RAVLLLLGIQL--TALWPIAAVEIYTSRVLEAVNGTDARLKCTFSSFAPVGDA-LTVTWN 64
Query: 69 YQECNNCSEEMFLQFRMKIINLKLERFQDRVEFSGNPSKYDVSVMLRNVQPEDEGIYNCY 128
++ + E+ + + RF+DRV + GNP +YD S++L +Q +D G Y C
Sbjct: 65 FRPLDGGPEQFVFYYHIDPFQPMSGRFKDRVSWDGNPERYDASILLWKLQFDDNGTYTCQ 124
Query: 129 IMNPPDRHRGHGKIHLQVLMEEPPERDSTVAVIVGASVGGFLAVVILVLMVVKCVRRKK- 187
+ NPPD G+I L V+ +A+ +G S + ++++V+++ + R+K+
Sbjct: 125 VKNPPDVDGVIGEIRLSVVHTVRFSEIHFLALAIG-SACALMIIIVIVVVLFQHYRKKRW 183
Query: 188 -EQKLSTDDLKTEEEGKTDGE 207
E+ ++K++EE + + E
Sbjct: 184 AERAHKVVEIKSKEEERLNQE 204
>gi|5032247 myelin protein zero-like 2 precursor [Homo sapiens]
Length = 215
Score = 92.0 bits (227), Expect = 3e-19
Identities = 56/201 (27%), Positives = 104/201 (51%), Gaps = 6/201 (2%)
Query: 9 RPAFSLTGLSLFFSLVPPGRSMEVTVPATLNVLNGSDARLPCTFNSCYTVNHKQFSLNWT 68
R L G+ L + + P ++E+ L +NG+DARL CTF+S V ++ W
Sbjct: 8 RAVLLLLGIQL--TALWPIAAVEIYTSRVLEAVNGTDARLKCTFSSFAPVGDA-LTVTWN 64
Query: 69 YQECNNCSEEMFLQFRMKIINLKLERFQDRVEFSGNPSKYDVSVMLRNVQPEDEGIYNCY 128
++ + E+ + + RF+DRV + GNP +YD S++L +Q +D G Y C
Sbjct: 65 FRPLDGGPEQFVFYYHIDPFQPMSGRFKDRVSWDGNPERYDASILLWKLQFDDNGTYTCQ 124
Query: 129 IMNPPDRHRGHGKIHLQVLMEEPPERDSTVAVIVGASVGGFLAVVILVLMVVKCVRRKK- 187
+ NPPD G+I L V+ +A+ +G S + ++++V+++ + R+K+
Sbjct: 125 VKNPPDVDGVIGEIRLSVVHTVRFSEIHFLALAIG-SACALMIIIVIVVVLFQHYRKKRW 183
Query: 188 -EQKLSTDDLKTEEEGKTDGE 207
E+ ++K++EE + + E
Sbjct: 184 AERAHKVVEIKSKEEERLNQE 204
>gi|28372555 sodium channel, voltage-gated, type IV, beta isoform 1
precursor [Homo sapiens]
Length = 228
Score = 82.4 bits (202), Expect = 3e-16
Identities = 63/206 (30%), Positives = 108/206 (52%), Gaps = 26/206 (12%)
Query: 15 TGLSLFFSLVPPGRSMEVTVPATLNV--LNGSDARLPCTFNSCYTVNHKQFSLNWTYQEC 72
TGL F L+P S+EV+V ++ +NG++ LPCTF+SC+ F WTY
Sbjct: 17 TGLLGLF-LLPVTLSLEVSVGKATDIYAVNGTEILLPCTFSSCFGFEDLHF--RWTY--- 70
Query: 73 NNCSEEMFLQFRMKIINLKLE-----RFQDRVEFSGNPSKY--DVSVMLRNVQPEDEGIY 125
N S+ + + N K + + DR+ G+ + ++S++LR+++ D G Y
Sbjct: 71 -NSSDAFKILIEGTVKNEKSDPKVTLKDDDRITLVGSTKEKMNNISIVLRDLEFSDTGKY 129
Query: 126 NCYIMNPPDRH-RGHGKIHLQVLMEEPPERDSTVAVIVGASVGGFLAVVILVLMVVKCV- 183
C++ NP + + + H I LQV ++ E D+TV +I+ A VGG + ++IL+L++ K +
Sbjct: 130 TCHVKNPKENNLQHHATIFLQV-VDRLEEVDNTVTLIILAVVGGVIGLLILILLIKKLII 188
Query: 184 -------RRKKEQKLSTDDLKTEEEG 202
+KKE +S+ E G
Sbjct: 189 FILKKTREKKKECLVSSSGNDNTENG 214
>gi|4506357 myelin protein zero-like 1 isoform a [Homo sapiens]
Length = 269
Score = 68.6 bits (166), Expect = 4e-12
Identities = 49/173 (28%), Positives = 80/173 (46%), Gaps = 3/173 (1%)
Query: 29 SMEVTVPATLNVLNGSDARLPCTFNSCYTVNHKQFSLNWTYQECNNCSEEMFLQFRMKII 88
++EV P + V NG+ +L C F S T S++W++Q + F + +
Sbjct: 37 ALEVYTPKEIFVANGTQGKLTCKFKSTSTTGGLT-SVSWSFQPEGADTTVSFFHYSQGQV 95
Query: 89 NL-KLERFQDRVEFSGNPSKYDVSVMLRNVQPEDEGIYNCYIMNPPDRHRGHGKIHLQVL 147
L F+DR+ ++G+ K D S+ + N+Q G Y C + NPPD G I L V
Sbjct: 96 YLGNYPPFKDRISWAGDLDKKDASINIENMQFIHNGTYICDVKNPPDIVVQPGHIRLYV- 154
Query: 148 MEEPPERDSTVAVIVGASVGGFLAVVILVLMVVKCVRRKKEQKLSTDDLKTEE 200
+E+ V V+VG L + +L+ M++ + R+K K T E
Sbjct: 155 VEKENLPVFPVWVVVGIVTAVVLGLTLLISMILAVLYRRKNSKRDYTGCSTSE 207
>gi|46358426 myelin protein zero-like 1 isoform b [Homo sapiens]
Length = 209
Score = 67.4 bits (163), Expect = 9e-12
Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 3/163 (1%)
Query: 29 SMEVTVPATLNVLNGSDARLPCTFNSCYTVNHKQFSLNWTYQECNNCSEEMFLQFRMKII 88
++EV P + V NG+ +L C F S T S++W++Q + F + +
Sbjct: 37 ALEVYTPKEIFVANGTQGKLTCKFKSTSTTGGLT-SVSWSFQPEGADTTVSFFHYSQGQV 95
Query: 89 NL-KLERFQDRVEFSGNPSKYDVSVMLRNVQPEDEGIYNCYIMNPPDRHRGHGKIHLQVL 147
L F+DR+ ++G+ K D S+ + N+Q G Y C + NPPD G I L V
Sbjct: 96 YLGNYPPFKDRISWAGDLDKKDASINIENMQFIHNGTYICDVKNPPDIVVQPGHIRLYV- 154
Query: 148 MEEPPERDSTVAVIVGASVGGFLAVVILVLMVVKCVRRKKEQK 190
+E+ V V+VG L + +L+ M++ + R+K K
Sbjct: 155 VEKENLPVFPVWVVVGIVTAVVLGLTLLISMILAVLYRRKNSK 197
>gi|4505243 myelin protein zero [Homo sapiens]
Length = 258
Score = 65.9 bits (159), Expect = 3e-11
Identities = 55/194 (28%), Positives = 93/194 (47%), Gaps = 9/194 (4%)
Query: 19 LFFSLV-PPGRSMEVTVPATLNVLNGSDARLPCTFNSCYTVNHKQFSLNWTYQ-ECNNCS 76
LF SLV P +++ V ++ GS L C+F S V+ S W YQ E +
Sbjct: 28 LFSSLVLSPAQAIVVYTDREVHGAVGSRVTLHCSFWSSEWVSD-DISFTWRYQPEGGRDA 86
Query: 77 EEMFLQFRMKIINLKLERFQDRVEFSGNPSKYDVSVMLRNVQPEDEGIYNCYIMNPPDRH 136
+F + + ++ F++R+++ G+P D S+++ N+ D G + C + NPPD
Sbjct: 87 ISIFHYAKGQPYIDEVGTFKERIQWVGDPRWKDGSIVIHNLDYSDNGTFTCDVKNPPDIV 146
Query: 137 RGHGKIHLQVLMEEPPERDSTVAVIVGASVGGFLAVVILVLMVVKCVRR--KKEQKLSTD 194
++ L V + P + V++GA +GG L VV+L+L++ VR + Q
Sbjct: 147 GKTSQVTLYVFEKVP----TRYGVVLGAVIGGVLGVVLLLLLLFYVVRYCWLRRQAALQR 202
Query: 195 DLKTEEEGKTDGEG 208
L E+GK G
Sbjct: 203 RLSAMEKGKLHKPG 216
>gi|38093645 myelin protein zero-like 3 [Homo sapiens]
Length = 235
Score = 64.7 bits (156), Expect = 6e-11
Identities = 56/203 (27%), Positives = 91/203 (44%), Gaps = 18/203 (8%)
Query: 12 FSLTGLSLFFSLVPPGRSMEVTVPATLNVLNGSDARLPCTFNSCYTVNHKQFSLNWTYQE 71
F L G+ LFF V S+E+ A + G +L CTF S V K +++WTY+
Sbjct: 15 FPLLGV-LFFQGVYIVFSLEIRADAHVRGYVGEKIKLKCTFKSTSDVTDK-LTIDWTYRP 72
Query: 72 CNNCSEEMFLQFRMKIINLKLERFQDRVEFSGNPSKYDVSVMLRNVQPEDEGIYNCYIMN 131
++ ++ F+DR+ + GN K D S+ + N +D G ++C + N
Sbjct: 73 PSSSHTVSIFHYQSFQYPTTAGTFRDRISWVGNVYKGDASISISNPTIKDNGTFSCAVKN 132
Query: 132 PPDRHRGHGKIHLQVLMEEPPERDSTVAVIVGASVGGFL-AVVILVLMVVKCVRR----- 185
PPD H L V S+VA++ S+ F+ + V++ L++V+ R+
Sbjct: 133 PPDVHHNIPMTELTVTERGFGTMLSSVALL---SILVFVPSAVVVALLLVRMGRKAAGLK 189
Query: 186 -------KKEQKLSTDDLKTEEE 201
KK +DD EEE
Sbjct: 190 KRSRSGYKKSSIEVSDDTDQEEE 212
>gi|215272334 sodium channel, voltage-gated, type IV, beta isoform 3
[Homo sapiens]
Length = 118
Score = 55.8 bits (133), Expect = 3e-08
Identities = 33/103 (32%), Positives = 60/103 (58%), Gaps = 10/103 (9%)
Query: 109 DVSVMLRNVQPEDEGIYNCYIMNPPDRH-RGHGKIHLQVLMEEPPERDSTVAVIVGASVG 167
++S++LR+++ D G Y C++ NP + + + H I LQV ++ E D+TV +I+ A VG
Sbjct: 3 NISIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQV-VDRLEEVDNTVTLIILAVVG 61
Query: 168 GFLAVVILVLMVVKCV--------RRKKEQKLSTDDLKTEEEG 202
G + ++IL+L++ K + +KKE +S+ E G
Sbjct: 62 GVIGLLILILLIKKLIIFILKKTREKKKECLVSSSGNDNTENG 104
>gi|148664224 adhesion molecule, interacts with CXADR antigen 1
isoform 2 [Homo sapiens]
Length = 384
Score = 53.1 bits (126), Expect = 2e-07
Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 35 PATLNVLNGSDARLPCTFNSCYTVNHKQFSLNWTYQECNNCSEEMFLQFRMKIINLKLER 94
P L V G A + C F S T + F ++WT + +E L + + ++ + R
Sbjct: 17 PPELTVHVGDSALMGCVFQS--TEDKCIFKIDWTLSPGEHAKDEYVLYYYSNL-SVPIGR 73
Query: 95 FQDRVEFSGNPSKYDVSVMLRNVQPEDEGIYNCYIMNPPDRHRGHGKIHLQVLMEEPPE 153
FQ+RV G+ D S++L++VQ D+G Y C I + + L VL EEP E
Sbjct: 74 FQNRVHLMGDILCNDGSLLLQDVQEADQGTYICEIRLKGESQVFKKAVVLHVLPEEPKE 132
Score = 38.9 bits (89), Expect = 0.003
Identities = 41/172 (23%), Positives = 68/172 (39%), Gaps = 28/172 (16%)
Query: 35 PATLNVLNGSDARLPCTFNSCYTVNHKQFSLNWTYQECNNCSEEMFLQFRMKIINLKLER 94
P L V G ++ C F S V H + W + E +F + ++++ +
Sbjct: 130 PKELMVHVGGLIQMGCVFQST-EVKHVT-KVEWIFSGRRAKEEIVFRYYHKLRMSVEYSQ 187
Query: 95 ----FQDRVEFSGNPSKYDVSVMLRNVQPEDEGIYNCYIMNPPDRHRGHGKIHLQVLMEE 150
FQ+RV G+ + D S+ML+ V+ D G Y C I H G+ +++
Sbjct: 188 SWGHFQNRVNLVGDIFRNDGSIMLQGVRESDGGNYTCSI------HLGNLVFKKTIVLHV 241
Query: 151 PPERDST----------------VAVIVGASVGGFLAVVILVLMVVKCVRRK 186
PE T + +IVG L + +L+L+V K K
Sbjct: 242 SPEEPRTLVTPAALRPLVLGGNQLVIIVGIVCATILLLPVLILIVKKTCGNK 293
>gi|148664207 adhesion molecule, interacts with CXADR antigen 1
isoform 1 [Homo sapiens]
Length = 394
Score = 53.1 bits (126), Expect = 2e-07
Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 35 PATLNVLNGSDARLPCTFNSCYTVNHKQFSLNWTYQECNNCSEEMFLQFRMKIINLKLER 94
P L V G A + C F S T + F ++WT + +E L + + ++ + R
Sbjct: 27 PPELTVHVGDSALMGCVFQS--TEDKCIFKIDWTLSPGEHAKDEYVLYYYSNL-SVPIGR 83
Query: 95 FQDRVEFSGNPSKYDVSVMLRNVQPEDEGIYNCYIMNPPDRHRGHGKIHLQVLMEEPPE 153
FQ+RV G+ D S++L++VQ D+G Y C I + + L VL EEP E
Sbjct: 84 FQNRVHLMGDILCNDGSLLLQDVQEADQGTYICEIRLKGESQVFKKAVVLHVLPEEPKE 142
Score = 38.9 bits (89), Expect = 0.003
Identities = 41/172 (23%), Positives = 68/172 (39%), Gaps = 28/172 (16%)
Query: 35 PATLNVLNGSDARLPCTFNSCYTVNHKQFSLNWTYQECNNCSEEMFLQFRMKIINLKLER 94
P L V G ++ C F S V H + W + E +F + ++++ +
Sbjct: 140 PKELMVHVGGLIQMGCVFQST-EVKHVT-KVEWIFSGRRAKEEIVFRYYHKLRMSVEYSQ 197
Query: 95 ----FQDRVEFSGNPSKYDVSVMLRNVQPEDEGIYNCYIMNPPDRHRGHGKIHLQVLMEE 150
FQ+RV G+ + D S+ML+ V+ D G Y C I H G+ +++
Sbjct: 198 SWGHFQNRVNLVGDIFRNDGSIMLQGVRESDGGNYTCSI------HLGNLVFKKTIVLHV 251
Query: 151 PPERDST----------------VAVIVGASVGGFLAVVILVLMVVKCVRRK 186
PE T + +IVG L + +L+L+V K K
Sbjct: 252 SPEEPRTLVTPAALRPLVLGGNQLVIIVGIVCATILLLPVLILIVKKTCGNK 303
>gi|32699028 V-set and immunoglobulin domain containing 1 [Homo
sapiens]
Length = 387
Score = 52.8 bits (125), Expect = 2e-07
Identities = 34/122 (27%), Positives = 66/122 (54%), Gaps = 6/122 (4%)
Query: 30 MEVTVP-ATLNVLNGSDARLPCTFNSCYTVNHKQFSLNWTYQECNNCSEEMFLQFRMKII 88
++VT+P +NV GS+ L C + + + +Q S+ W++ E + + F
Sbjct: 22 VQVTIPDGFVNVTVGSNVTLICIYTTT-VASREQLSIQWSFFHKKEM-EPISIYFSQGGQ 79
Query: 89 NLKLERFQDRVEFSGNPSKYDVSVMLRNVQPEDEGIYNCYIMNPPD-RHRGHGKIHLQVL 147
+ + +F+DR+ S +P + S+ + ++QP D GIY C + NPPD + G +++ VL
Sbjct: 80 AVAIGQFKDRITGSNDPG--NASITISHMQPADSGIYICDVNNPPDFLGQNQGILNVSVL 137
Query: 148 ME 149
++
Sbjct: 138 VK 139
>gi|62865876 immunoglobulin superfamily, member 11 isoform b [Homo
sapiens]
Length = 431
Score = 51.6 bits (122), Expect = 5e-07
Identities = 38/120 (31%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Query: 19 LFFSLVPPGRSMEVTV-PATLNVLNGSDARLPCTFNSCYTVNHKQFSLN--WTYQECNNC 75
L SL S+EV+ P ++ V G A LPCTF T + +LN W +N
Sbjct: 12 LLLSLHGVAASLEVSESPGSIQVARGQPAVLPCTF----TTSAALINLNVIWMVTPLSNA 67
Query: 76 SE-EMFLQFRMKIINLKLERFQDRVEFSGNPSKYDVSVMLRNVQPEDEGIYNCYIMNPPD 134
++ E + ++ + RF RV F+G +VS+ + N Q D G Y C + N PD
Sbjct: 68 NQPEQVILYQGGQMFDGAPRFHGRVGFTGTMPATNVSIFINNTQLSDTGTYQCLVNNLPD 127
>gi|62865874 immunoglobulin superfamily, member 11 isoform a [Homo
sapiens]
Length = 430
Score = 51.2 bits (121), Expect = 6e-07
Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 21 FSLVPPGRSMEVTV-PATLNVLNGSDARLPCTFNSCYTVNHKQFSLN--WTYQECNNCSE 77
FS S+EV+ P ++ V G A LPCTF T + +LN W +N ++
Sbjct: 13 FSRTGVAASLEVSESPGSIQVARGQPAVLPCTF----TTSAALINLNVIWMVTPLSNANQ 68
Query: 78 -EMFLQFRMKIINLKLERFQDRVEFSGNPSKYDVSVMLRNVQPEDEGIYNCYIMNPPD 134
E + ++ + RF RV F+G +VS+ + N Q D G Y C + N PD
Sbjct: 69 PEQVILYQGGQMFDGAPRFHGRVGFTGTMPATNVSIFINNTQLSDTGTYQCLVNNLPD 126
>gi|21361429 V-set and immunoglobulin domain containing 2 [Homo
sapiens]
Length = 327
Score = 45.8 bits (107), Expect = 3e-05
Identities = 55/172 (31%), Positives = 75/172 (43%), Gaps = 13/172 (7%)
Query: 5 AWLPRPAFSLTGLSLFFSLVPPGRSMEVTVPAT-LNVLNGSDARLPCTFNSCYTVNHKQF 63
A LP P L G L F L G ++EV VP L+ G A L CT++ T F
Sbjct: 2 AELPGPF--LCGALLGF-LCLSGLAVEVKVPTEPLSTPLGKTAELTCTYS---TSVGDSF 55
Query: 64 SLNWTY-QECNNCSEEMFLQFRMKIINLKLERFQDRVEFSGNPSKYDVSVM-LRNVQPED 121
+L W++ Q SE + + RV NP V+ + L +V P D
Sbjct: 56 ALEWSFVQPGKPISESHPILYFTNGHLYPTGSKSKRVSLLQNPPTVGVATLKLTDVHPSD 115
Query: 122 EGIYNCYIMNPPDRH-RGHGKIHLQVLMEEPPERDSTVAVIVGASVGGFLAV 172
G Y C + NPPD + G G I+L VL+ P + + SVGG A+
Sbjct: 116 TGTYLCQVNNPPDFYTNGLGLINLTVLV---PPSNPLCSQSGQTSVGGSTAL 164
>gi|13489095 sialoadhesin precursor [Homo sapiens]
Length = 1709
Score = 44.7 bits (104), Expect = 6e-05
Identities = 43/156 (27%), Positives = 65/156 (41%), Gaps = 6/156 (3%)
Query: 14 LTGLSLFFSLVPPGR-SMEVTVPATLNVLNGSDARLPCTFNSCYTVNHKQFSLNWTYQEC 72
L L L S P G+ S V+ P + + GS +PC F+ V Y +
Sbjct: 4 LPKLLLLASFFPAGQASWGVSSPQDVQGVKGSCLLIPCIFSFPADVEVPDGITAIWYYDY 63
Query: 73 NNCSEEMFLQFRMKIINLKLERFQDRVEFSGNPSKYDVSVMLRNVQPEDEGIYNCYIMNP 132
+ + + K++ RF+ R EF GNP +++L+++QPED G YN
Sbjct: 64 SGQRQVVSHSADPKLVEA---RFRGRTEFMGNPEHRVCNLLLKDLQPEDSGSYNFRFEIS 120
Query: 133 PDRHRGHGKIHLQVLMEEP--PERDSTVAVIVGASV 166
K L + EEP P S V ++ G V
Sbjct: 121 EVNRWSDVKGTLVTVTEEPRVPTIASPVELLEGTEV 156
>gi|42560233 poliovirus receptor-related 1 isoform 3 [Homo sapiens]
Length = 352
Score = 43.1 bits (100), Expect = 2e-04
Identities = 42/147 (28%), Positives = 71/147 (48%), Gaps = 9/147 (6%)
Query: 16 GLSLFFSLVPPGRSMEVTVPATLNVLNGSDARLPCTF-NSCYTVNHKQFSLNWTYQECNN 74
GL+ FF +P S V V ++ G+D L C+F N +V Q T+Q+ N
Sbjct: 19 GLTAFF--LPGVHSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQV----TWQKSTN 72
Query: 75 CSEEMFLQFRMKIINLKLERFQDRVEFSGNPSKYDVSVMLRNVQPEDEGIYNCYIMNPPD 134
S++ + + L +++RVEF PS D ++ L ++ EDEG+Y C P
Sbjct: 73 GSKQNVAIYNPSMGVSVLAPYRERVEFL-RPSFTDGTIRLSRLELEDEGVYICEFATFPT 131
Query: 135 RHRGHGKIHLQVLMEEPPERDSTVAVI 161
+R +++L V+ + + T AV+
Sbjct: 132 GNR-ESQLNLTVMAKPTNWIEGTQAVL 157
>gi|42560231 poliovirus receptor-related 1 isoform 2 [Homo sapiens]
Length = 458
Score = 43.1 bits (100), Expect = 2e-04
Identities = 42/147 (28%), Positives = 71/147 (48%), Gaps = 9/147 (6%)
Query: 16 GLSLFFSLVPPGRSMEVTVPATLNVLNGSDARLPCTF-NSCYTVNHKQFSLNWTYQECNN 74
GL+ FF +P S V V ++ G+D L C+F N +V Q T+Q+ N
Sbjct: 19 GLTAFF--LPGVHSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQV----TWQKSTN 72
Query: 75 CSEEMFLQFRMKIINLKLERFQDRVEFSGNPSKYDVSVMLRNVQPEDEGIYNCYIMNPPD 134
S++ + + L +++RVEF PS D ++ L ++ EDEG+Y C P
Sbjct: 73 GSKQNVAIYNPSMGVSVLAPYRERVEFL-RPSFTDGTIRLSRLELEDEGVYICEFATFPT 131
Query: 135 RHRGHGKIHLQVLMEEPPERDSTVAVI 161
+R +++L V+ + + T AV+
Sbjct: 132 GNR-ESQLNLTVMAKPTNWIEGTQAVL 157
>gi|42560237 poliovirus receptor-related 1 isoform 1 [Homo sapiens]
Length = 517
Score = 43.1 bits (100), Expect = 2e-04
Identities = 42/147 (28%), Positives = 71/147 (48%), Gaps = 9/147 (6%)
Query: 16 GLSLFFSLVPPGRSMEVTVPATLNVLNGSDARLPCTF-NSCYTVNHKQFSLNWTYQECNN 74
GL+ FF +P S V V ++ G+D L C+F N +V Q T+Q+ N
Sbjct: 19 GLTAFF--LPGVHSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQV----TWQKSTN 72
Query: 75 CSEEMFLQFRMKIINLKLERFQDRVEFSGNPSKYDVSVMLRNVQPEDEGIYNCYIMNPPD 134
S++ + + L +++RVEF PS D ++ L ++ EDEG+Y C P
Sbjct: 73 GSKQNVAIYNPSMGVSVLAPYRERVEFL-RPSFTDGTIRLSRLELEDEGVYICEFATFPT 131
Query: 135 RHRGHGKIHLQVLMEEPPERDSTVAVI 161
+R +++L V+ + + T AV+
Sbjct: 132 GNR-ESQLNLTVMAKPTNWIEGTQAVL 157
Score = 30.4 bits (67), Expect = 1.2
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 13/87 (14%)
Query: 96 QDRVEFSGNPSKYDVSVMLRNVQPEDEGIYNCYIMNPPDRHRGHGKIHLQVL--MEEPPE 153
Q+R F P Y ++ G Y C NP G ++++ PPE
Sbjct: 296 QNRTLFFKGPINYSLA-----------GTYICEATNPIGTRSGQVEVNITEFPYTPSPPE 344
Query: 154 RDSTVAVIVGASVGGFLAVVILVLMVV 180
+ A +GG ++LVL+VV
Sbjct: 345 HGRRAGPVPTAIIGGVAGSILLVLIVV 371
>gi|4503173 coxsackie virus and adenovirus receptor precursor [Homo
sapiens]
Length = 365
Score = 41.6 bits (96), Expect = 5e-04
Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 7/135 (5%)
Query: 19 LFFSLVPPGRSMEVTVPATL-NVLNGSDARLPCTFNSCYTVNHKQFSLNWTYQECNN--C 75
L +V RS+ +T P + G A LPC F + + + W +N
Sbjct: 9 LLCGVVDFARSLSITTPEEMIEKAKGETAYLPCKF-TLSPEDQGPLDIEWLISPADNQKV 67
Query: 76 SEEMFLQFRMKIINLKLERFQDRVEFSGNPSKY-DVSVMLRNVQPEDEGIYNCYIMNPPD 134
+ + L KI + + RV F+ N K D S+ + N+Q D G Y C + P
Sbjct: 68 DQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPG 127
Query: 135 RHRGHGKIHLQVLME 149
+ KIHL VL++
Sbjct: 128 --VANKKIHLVVLVK 140
>gi|9055238 voltage-gated sodium channel beta-3 subunit precursor
[Homo sapiens]
Length = 215
Score = 40.0 bits (92), Expect = 0.001
Identities = 47/186 (25%), Positives = 85/186 (45%), Gaps = 20/186 (10%)
Query: 32 VTVPATLNVLNGSDARLPCTFNSCYTVNHKQFS--LNWTYQECNNCSEEMFLQFRMKIIN 89
V VP+ + G+ +L C SC + + + W Y+ + FL + + +
Sbjct: 27 VEVPSETEAVQGNPMKLRCI--SCMKREEVEATTVVEWFYRPEGG---KDFLIYEYRNGH 81
Query: 90 LKLER-FQDRVEFSGNPSKYDVSVMLRNVQPEDEGIYNCYIMN--PPDRHRGHGK----I 142
++E FQ R++++G+ DVS+ + NV D G+Y C + + HR K I
Sbjct: 82 QEVESPFQGRLQWNGSKDLQDVSITVLNVTLNDSGLYTCNVSREFEFEAHRPFVKTTRLI 141
Query: 143 HLQVLMEEPPERDSTVAVIVGASVGGFLAVVILVLMVVKCVRR-----KKEQKLSTDDLK 197
L+V E + S V+ I+ + FL + +L+ M+ C R+ + Q+ ++D L
Sbjct: 142 PLRVTEEAGEDFTSVVSEIMMYILLVFLTLWLLIEMIY-CYRKVSKAEEAAQENASDYLA 200
Query: 198 TEEEGK 203
E K
Sbjct: 201 IPSENK 206
>gi|93587332 voltage-gated sodium channel beta-3 subunit precursor
[Homo sapiens]
Length = 215
Score = 40.0 bits (92), Expect = 0.001
Identities = 47/186 (25%), Positives = 85/186 (45%), Gaps = 20/186 (10%)
Query: 32 VTVPATLNVLNGSDARLPCTFNSCYTVNHKQFS--LNWTYQECNNCSEEMFLQFRMKIIN 89
V VP+ + G+ +L C SC + + + W Y+ + FL + + +
Sbjct: 27 VEVPSETEAVQGNPMKLRCI--SCMKREEVEATTVVEWFYRPEGG---KDFLIYEYRNGH 81
Query: 90 LKLER-FQDRVEFSGNPSKYDVSVMLRNVQPEDEGIYNCYIMN--PPDRHRGHGK----I 142
++E FQ R++++G+ DVS+ + NV D G+Y C + + HR K I
Sbjct: 82 QEVESPFQGRLQWNGSKDLQDVSITVLNVTLNDSGLYTCNVSREFEFEAHRPFVKTTRLI 141
Query: 143 HLQVLMEEPPERDSTVAVIVGASVGGFLAVVILVLMVVKCVRR-----KKEQKLSTDDLK 197
L+V E + S V+ I+ + FL + +L+ M+ C R+ + Q+ ++D L
Sbjct: 142 PLRVTEEAGEDFTSVVSEIMMYILLVFLTLWLLIEMIY-CYRKVSKAEEAAQENASDYLA 200
Query: 198 TEEEGK 203
E K
Sbjct: 201 IPSENK 206
>gi|61966777 V-set and immunoglobulin domain containing 8 [Homo
sapiens]
Length = 414
Score = 39.7 bits (91), Expect = 0.002
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 77 EEMFLQFRMKIINL-KLERFQDRVEFSGN-PSKYDVSVMLRNVQPEDEGIYNCYI 129
E +FL ++ K IN L Q RV F+ + PS+YD S+ L N+Q D Y C +
Sbjct: 74 ENVFLSYQDKRINHGSLPHLQQRVRFAASDPSQYDASINLMNLQVSDTATYECRV 128
Score = 29.3 bits (64), Expect = 2.6
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 95 FQDRVEFSGNPSKYDVSVMLRNVQPEDEGIYNCYIMNPPDRHRGHGKIHLQVLMEEPPER 154
+Q+ S N + ++L+++ D+G+Y C + N + V + E
Sbjct: 207 YQESFHSSINQGLNNGDLVLKDISRADDGLYQCTVAN---------NVGYSVCVVEVKVS 257
Query: 155 DS-TVAVIVGASVGGFLAVVILVL 177
DS + VI+G +G LA+ L +
Sbjct: 258 DSRRIGVIIGIVLGSLLALGCLAV 281
>gi|226529863 T-cell immunoglobulin and mucin domain containing 4
isoform 1 [Homo sapiens]
Length = 378
Score = 38.9 bits (89), Expect = 0.003
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 9/103 (8%)
Query: 32 VTVPATLNVLNGSDARLPCTFNSCYTVNHKQFSLNWTYQEC--NNCSEEMFLQFRMKIIN 89
VT + + G LPC ++S +H S+ W +C + C E + M++ +
Sbjct: 22 VTSETVVTEVLGHRVTLPCLYSSW---SHNSNSMCWGKDQCPYSGCKEALIRTDGMRVTS 78
Query: 90 LKLERFQDRVEFSGNPSKYDVSVMLRNVQPEDEGIYNCYIMNP 132
K +++ G + DVS+ + N D G+Y C I P
Sbjct: 79 RKSAKYR----LQGTIPRGDVSLTILNPSESDSGVYCCRIEVP 117
>gi|226498466 T-cell immunoglobulin and mucin domain containing 4
isoform 2 [Homo sapiens]
Length = 350
Score = 38.9 bits (89), Expect = 0.003
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 9/103 (8%)
Query: 32 VTVPATLNVLNGSDARLPCTFNSCYTVNHKQFSLNWTYQEC--NNCSEEMFLQFRMKIIN 89
VT + + G LPC ++S +H S+ W +C + C E + M++ +
Sbjct: 22 VTSETVVTEVLGHRVTLPCLYSSW---SHNSNSMCWGKDQCPYSGCKEALIRTDGMRVTS 78
Query: 90 LKLERFQDRVEFSGNPSKYDVSVMLRNVQPEDEGIYNCYIMNP 132
K +++ G + DVS+ + N D G+Y C I P
Sbjct: 79 RKSAKYR----LQGTIPRGDVSLTILNPSESDSGVYCCRIEVP 117
>gi|239753613 PREDICTED: similar to hCG1657343 [Homo sapiens]
Length = 346
Score = 38.1 bits (87), Expect = 0.006
Identities = 30/126 (23%), Positives = 60/126 (47%), Gaps = 7/126 (5%)
Query: 59 NHKQFSLNWTYQECNNCSEEMFLQFRMKIINLKLER--FQDRVEFS-GNPSKYDVSVMLR 115
++K++ L + Y + ++ QF L+ + ++ RV S+ +S++LR
Sbjct: 115 DNKEYYLLFKYLDFFEVFSKLVYQFHNNTEQLEDQNSLYEGRVSVDQAEISEGTLSLLLR 174
Query: 116 NVQPEDEGIYNCYIMNPPDRHRGHGKIHLQVLMEEPPERDSTVAVIVGASVGGFLAVVIL 175
NV DE IY C + P G G+ +++++EE + ++ I+ + GF V +
Sbjct: 175 NVDFMDEAIYKCSAITPD----GRGESTIKLIVEERDLSNHSIVEILEEQMNGFYRVFSI 230
Query: 176 VLMVVK 181
+ VK
Sbjct: 231 LKYPVK 236
>gi|239748209 PREDICTED: similar to hCG1657343 [Homo sapiens]
Length = 346
Score = 38.1 bits (87), Expect = 0.006
Identities = 30/126 (23%), Positives = 60/126 (47%), Gaps = 7/126 (5%)
Query: 59 NHKQFSLNWTYQECNNCSEEMFLQFRMKIINLKLER--FQDRVEFS-GNPSKYDVSVMLR 115
++K++ L + Y + ++ QF L+ + ++ RV S+ +S++LR
Sbjct: 115 DNKEYYLLFKYLDFFEVFSKLVYQFHNNTEQLEDQNSLYEGRVSVDQAEISEGTLSLLLR 174
Query: 116 NVQPEDEGIYNCYIMNPPDRHRGHGKIHLQVLMEEPPERDSTVAVIVGASVGGFLAVVIL 175
NV DE IY C + P G G+ +++++EE + ++ I+ + GF V +
Sbjct: 175 NVDFMDEAIYKCSAITPD----GRGESTIKLIVEERDLSNHSIVEILEEQMNGFYRVFSI 230
Query: 176 VLMVVK 181
+ VK
Sbjct: 231 LKYPVK 236
>gi|239742107 PREDICTED: similar to hCG1657343 [Homo sapiens]
Length = 346
Score = 38.1 bits (87), Expect = 0.006
Identities = 30/126 (23%), Positives = 60/126 (47%), Gaps = 7/126 (5%)
Query: 59 NHKQFSLNWTYQECNNCSEEMFLQFRMKIINLKLER--FQDRVEFS-GNPSKYDVSVMLR 115
++K++ L + Y + ++ QF L+ + ++ RV S+ +S++LR
Sbjct: 115 DNKEYYLLFKYLDFFEVFSKLVYQFHNNTEQLEDQNSLYEGRVSVDQAEISEGTLSLLLR 174
Query: 116 NVQPEDEGIYNCYIMNPPDRHRGHGKIHLQVLMEEPPERDSTVAVIVGASVGGFLAVVIL 175
NV DE IY C + P G G+ +++++EE + ++ I+ + GF V +
Sbjct: 175 NVDFMDEAIYKCSAITPD----GRGESTIKLIVEERDLSNHSIVEILEEQMNGFYRVFSI 230
Query: 176 VLMVVK 181
+ VK
Sbjct: 231 LKYPVK 236
>gi|222136611 poliovirus receptor-related 4 [Homo sapiens]
Length = 510
Score = 38.1 bits (87), Expect = 0.006
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 14/150 (9%)
Query: 4 DAWLPRPAFSLTGLSLFFSLVPPGRSMEVTVPATLNVLNGSDARLPCTFNSCYTVNHKQF 63
+AWL L L+ F P G E+ + V+ G DA+LPC + +
Sbjct: 13 EAWL----LLLLLLASFTGRCPAG---ELETSDVVTVVLGQDAKLPCFYRG--DSGEQVG 63
Query: 64 SLNWTYQECNNCSEEMFLQFRMKIINLKLERFQDRVEFSGNP-SKYDVSVMLRNVQPEDE 122
+ W + ++E+ L +++ ++ RVE P + D SV+LRN DE
Sbjct: 64 QVAWARVDAGEGAQELALLHSKYGLHVS-PAYEGRVEQPPPPRNPLDGSVLLRNAVQADE 122
Query: 123 GIYNCYIMNPPDRHRGHGKIHLQVLMEEPP 152
G Y C + P G + L++ + PP
Sbjct: 123 GEYECRVSTFP---AGSFQARLRLRVLVPP 149
>gi|5031561 transmembrane glycoprotein A33 precursor [Homo sapiens]
Length = 319
Score = 38.1 bits (87), Expect = 0.006
Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 4/117 (3%)
Query: 38 LNVLNGSDARLPCTFNSCYTVNHKQFSLNWTYQECNNCSEEMFLQFRMKIINLKLERFQD 97
L G LPCT+++ + + ++ + W + + F K + E +++
Sbjct: 31 LRASQGKSVTLPCTYHT--STSSREGLIQWDKLLLTHTERVVIWPFSNKNY-IHGELYKN 87
Query: 98 RVEFSGNPSKYDVSVMLRNVQPEDEGIYNCYIMNPPDRHRGHGKIHLQVLMEEPPER 154
RV S N + D S+ + + D G Y C + D G+ K +++L+ PP +
Sbjct: 88 RVSISNNAEQSDASITIDQLTMADNGTYECSVSLMSDL-EGNTKSRVRLLVLVPPSK 143
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,433,774
Number of Sequences: 37866
Number of extensions: 419961
Number of successful extensions: 1976
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 113
Number of HSP's that attempted gapping in prelim test: 1789
Number of HSP's gapped (non-prelim): 283
length of query: 215
length of database: 18,247,518
effective HSP length: 98
effective length of query: 117
effective length of database: 14,536,650
effective search space: 1700788050
effective search space used: 1700788050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.