Guide to the Human Genome
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Name: LOC100130701 Sequence: fasta or formatted (346aa) NCBI GI: 239748209
Description:

PREDICTED: similar to hCG1657343

Not currently referenced in the text

Other entries for this name:
alt mRNA {346aa} PREDICTED: similar to hCG1657343
alt prot {346aa} PREDICTED: similar to hCG1657343
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.8         13           2
 C cysteine            2.3          8           1
 D aspartate           5.8         20           1
 E glutamate           8.7         30           2
 F phenylalanine       4.9         17           2
 G glycine             4.3         15           1
 H histidine           3.5         12           1
 I isoleucine          4.9         17           2
 K lysine              4.0         14           1
 L leucine            11.3         39           3
 M methionine          1.2          4           1
 N asparagine          4.9         17           2
 P proline             6.1         21           2
 Q glutamine           2.9         10           1
 R arginine            6.6         23           2
 S serine              6.9         24           3
 T threonine           6.9         24           1
 V valine              6.1         21           1
 W tryptophan          1.2          4           2
 Y tyrosine            3.8         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1657343 
LOC100130701          1.000   PREDICTED: similar to hCG1657343 
LOC100130701          0.996   PREDICTED: similar to hCG1657343 
BTN2A2                0.039   butyrophilin, subfamily 2, member A2 isoform a 
VTCN1                 0.038   V-set domain containing T cell activation inhibitor ...
HHLA2                 0.036   HERV-H LTR-associating 2 
BTN2A1                0.032   butyrophilin, subfamily 2, member A1 isoform 1 precur...
BTN2A1                0.032   butyrophilin, subfamily 2, member A1 isoform 2 precu...
MOG                   0.030   myelin oligodendrocyte glycoprotein isoform beta5 pr...
MOG                   0.030   myelin oligodendrocyte glycoprotein isoform beta2 pr...
MOG                   0.030   myelin oligodendrocyte glycoprotein isoform alpha3 p...
MOG                   0.030   myelin oligodendrocyte glycoprotein isoform beta3 pr...
MOG                   0.030   myelin oligodendrocyte glycoprotein isoform beta1 pr...
MOG                   0.030   myelin oligodendrocyte glycoprotein isoform alpha2 p...
MOG                   0.030   myelin oligodendrocyte glycoprotein isoform alpha1 p...
MOG                   0.030   myelin oligodendrocyte glycoprotein isoform beta4 pr...
MOG                   0.030   myelin oligodendrocyte glycoprotein isoform alpha4 p...
BTNL8                 0.020   butyrophilin-like 8 isoform 4 precursor 
BTNL8                 0.020   butyrophilin-like 8 isoform 2 precursor 
BTNL8                 0.020   butyrophilin-like 8 isoform 1 precursor 
SCN2B                 0.019   sodium channel, voltage-gated, type II, beta 
BTN1A1                0.014   butyrophilin, subfamily 1, member A1 
LOC100294459          0.013   PREDICTED: similar to immunoglobulin lambda-like po...
PPDPF                 0.013   pancreatic progenitor cell differentiation and proli...
BTN3A2                0.012   butyrophilin, subfamily 3, member A2 precursor [Homo...
BTN3A1                0.012   butyrophilin, subfamily 3, member A1 isoform b [Homo...
BTN3A1                0.012   butyrophilin, subfamily 3, member A1 isoform d [Hom...
BTN3A1                0.012   butyrophilin, subfamily 3, member A1 isoform c [Hom...
BTN3A1                0.012   butyrophilin, subfamily 3, member A1 isoform a [Homo...
BTN3A3                0.012   butyrophilin, subfamily 3, member A3 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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