Search of human proteins with 4758988

Search of human proteins with 4758988

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo
sapiens]
         (205 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo sap...   412   e-115
gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens]          375   e-104
gi|16933567 mel transforming oncogene [Homo sapiens]                  229   9e-61
gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens]           226   8e-60
gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene fa...   219   1e-57
gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens]            219   1e-57
gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens]            219   1e-57
gi|4506363 RAB13, member RAS oncogene family [Homo sapiens]           218   2e-57
gi|33695095 ras-related GTP-binding protein RAB10 [Homo sapiens]      214   4e-56
gi|5803135 RAB35, member RAS oncogene family [Homo sapiens]           211   3e-55
gi|4506367 RAB3A, member RAS oncogene family [Homo sapiens]           194   6e-50
gi|19923985 RAB3C, member RAS oncogene family [Homo sapiens]          193   8e-50
gi|4759000 RAB3D, member RAS oncogene family [Homo sapiens]           189   1e-48
gi|4506365 RAB2A, member RAS oncogene family [Homo sapiens]           187   4e-48
gi|19923750 RAB3B, member RAS oncogene family [Homo sapiens]          186   9e-48
gi|239915976 RAB19, member RAS oncogene family [Homo sapiens]         186   2e-47
gi|4758984 Ras-related protein Rab-11A [Homo sapiens]                 184   6e-47
gi|21361884 RAB2B protein isoform 1 [Homo sapiens]                    183   8e-47
gi|46361978 RAB26, member RAS oncogene family [Homo sapiens]          183   1e-46
gi|50234889 RAB43 protein [Homo sapiens]                              182   1e-46
gi|21361418 RAB30, member RAS oncogene family [Homo sapiens]          182   2e-46
gi|190358517 RAB11B, member RAS oncogene family [Homo sapiens]        181   4e-46
gi|54859685 RAB37, member RAS oncogene family isoform 2 [Homo sa...   180   7e-46
gi|106507164 RAB12, member RAS oncogene family [Homo sapiens]         178   2e-45
gi|19923483 GTPase Rab14 [Homo sapiens]                               175   2e-44
gi|10880989 RAB18, member RAS oncogene family [Homo sapiens]          168   3e-42
gi|82659107 ras-related GTP-binding protein 4b [Homo sapiens]         168   3e-42
gi|19923262 RAB5A, member RAS oncogene family [Homo sapiens]          167   6e-42
gi|19923260 RAB4A, member RAS oncogene family [Homo sapiens]          166   1e-41
gi|41393614 RAB5C, member RAS oncogene family isoform a [Homo sa...   165   2e-41

>gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo
           sapiens]
          Length = 205

 Score =  412 bits (1058), Expect = e-115
 Identities = 205/205 (100%), Positives = 205/205 (100%)

Query: 1   MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI 60
           MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI
Sbjct: 1   MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI 60

Query: 61  KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKL 120
           KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKL
Sbjct: 61  KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKL 120

Query: 121 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGA 180
           LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGA
Sbjct: 121 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGA 180

Query: 181 TAGGAEKSNVKIQSTPVKQSGGGCC 205
           TAGGAEKSNVKIQSTPVKQSGGGCC
Sbjct: 181 TAGGAEKSNVKIQSTPVKQSGGGCC 205


>gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens]
          Length = 201

 Score =  375 bits (963), Expect = e-104
 Identities = 188/202 (93%), Positives = 194/202 (96%), Gaps = 1/202 (0%)

Query: 4   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63
           MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ
Sbjct: 1   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 60

Query: 64  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 123
           IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES+ NVKQWLQEIDRYASENVNKLLVG
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG 120

Query: 124 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAG 183
           NK DLTTKKVVD TTAKEFADSLGIPFLETSAKNATNVEQ+FMTMAAEIKKRMGPGA +G
Sbjct: 121 NKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASG 180

Query: 184 GAEKSNVKIQSTPVKQSGGGCC 205
           G E+ N+KI STPVK +GGGCC
Sbjct: 181 G-ERPNLKIDSTPVKPAGGGCC 201


>gi|16933567 mel transforming oncogene [Homo sapiens]
          Length = 207

 Score =  229 bits (585), Expect = 9e-61
 Identities = 108/196 (55%), Positives = 148/196 (75%)

Query: 4   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63
           M   YDYLFKLLLIGDSGVGK+C+L RF++D +  ++ISTIG+DFKIRTIELDGK IKLQ
Sbjct: 1   MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQ 60

Query: 64  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 123
           IWDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N++ W++ I+ +AS +V K+++G
Sbjct: 61  IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILG 120

Query: 124 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAG 183
           NKCD+  K+ V     ++ A   GI F+ETSAK   NVE +F T+A +IK +M       
Sbjct: 121 NKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGN 180

Query: 184 GAEKSNVKIQSTPVKQ 199
             + SN  ++ TP +Q
Sbjct: 181 SPQGSNQGVKITPDQQ 196


>gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens]
          Length = 207

 Score =  226 bits (577), Expect = 8e-60
 Identities = 108/190 (56%), Positives = 146/190 (76%), Gaps = 6/190 (3%)

Query: 4   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63
           M   YDYLFKLLLIGDSGVGK+CLL RF++D +  ++ISTIG+DFKIRTIELDGK IKLQ
Sbjct: 1   MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQ 60

Query: 64  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 123
           IWDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N+K W++ I+ +AS +V ++++G
Sbjct: 61  IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILG 120

Query: 124 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM------G 177
           NKCD+  K+ V     ++ A   GI FLETSAK++ NVE++F T+A +I  ++       
Sbjct: 121 NKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMNDS 180

Query: 178 PGATAGGAEK 187
             A AGG  K
Sbjct: 181 NSAGAGGPVK 190


>gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene
           family [Homo sapiens]
          Length = 327

 Score =  219 bits (558), Expect = 1e-57
 Identities = 101/200 (50%), Positives = 148/200 (74%)

Query: 1   MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI 60
           +S+M   YD+LFKLLLIGDSGVGK+CL++RFA+D +  +YISTIG+DFKIRT++++GK I
Sbjct: 122 VSAMAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKI 181

Query: 61  KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKL 120
           KLQ+WDTAGQERF+TIT++YYRGA GII+ YD+TD++SF N++ W++ I   AS  V  L
Sbjct: 182 KLQVWDTAGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAGVEHL 241

Query: 121 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGA 180
           L+GNKCD+  K+ V    A + A   GI F ETSAK++ NV+++F ++A +I  + G   
Sbjct: 242 LLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRR 301

Query: 181 TAGGAEKSNVKIQSTPVKQS 200
           +  G +  +  +++  +K +
Sbjct: 302 SGNGNKPPSTDLKTCDIKNT 321


>gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens]
          Length = 327

 Score =  219 bits (558), Expect = 1e-57
 Identities = 101/200 (50%), Positives = 148/200 (74%)

Query: 1   MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI 60
           +S+M   YD+LFKLLLIGDSGVGK+CL++RFA+D +  +YISTIG+DFKIRT++++GK I
Sbjct: 122 VSAMAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKI 181

Query: 61  KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKL 120
           KLQ+WDTAGQERF+TIT++YYRGA GII+ YD+TD++SF N++ W++ I   AS  V  L
Sbjct: 182 KLQVWDTAGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAGVEHL 241

Query: 121 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGA 180
           L+GNKCD+  K+ V    A + A   GI F ETSAK++ NV+++F ++A +I  + G   
Sbjct: 242 LLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRR 301

Query: 181 TAGGAEKSNVKIQSTPVKQS 200
           +  G +  +  +++  +K +
Sbjct: 302 SGNGNKPPSTDLKTCDIKNT 321


>gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens]
          Length = 327

 Score =  219 bits (558), Expect = 1e-57
 Identities = 101/200 (50%), Positives = 148/200 (74%)

Query: 1   MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI 60
           +S+M   YD+LFKLLLIGDSGVGK+CL++RFA+D +  +YISTIG+DFKIRT++++GK I
Sbjct: 122 VSAMAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKI 181

Query: 61  KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKL 120
           KLQ+WDTAGQERF+TIT++YYRGA GII+ YD+TD++SF N++ W++ I   AS  V  L
Sbjct: 182 KLQVWDTAGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAGVEHL 241

Query: 121 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGA 180
           L+GNKCD+  K+ V    A + A   GI F ETSAK++ NV+++F ++A +I  + G   
Sbjct: 242 LLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRR 301

Query: 181 TAGGAEKSNVKIQSTPVKQS 200
           +  G +  +  +++  +K +
Sbjct: 302 SGNGNKPPSTDLKTCDIKNT 321


>gi|4506363 RAB13, member RAS oncogene family [Homo sapiens]
          Length = 203

 Score =  218 bits (556), Expect = 2e-57
 Identities = 101/197 (51%), Positives = 146/197 (74%)

Query: 4   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63
           M   YD+LFKLLLIGDSGVGK+CL++RFA+D +  +YISTIG+DFKIRT++++GK IKLQ
Sbjct: 1   MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQ 60

Query: 64  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 123
           +WDTAGQERF+TIT++YYRGA GII+VYD+TD++SF N++ W++ I   AS  V +LL+G
Sbjct: 61  VWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLG 120

Query: 124 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAG 183
           NKCD+  K+ V    A + A   GI F ETSAK++ NV+++F ++A +I  + G   +  
Sbjct: 121 NKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRSGN 180

Query: 184 GAEKSNVKIQSTPVKQS 200
           G +  +  +++   K +
Sbjct: 181 GNKPPSTDLKTCDKKNT 197


>gi|33695095 ras-related GTP-binding protein RAB10 [Homo sapiens]
          Length = 200

 Score =  214 bits (545), Expect = 4e-56
 Identities = 99/168 (58%), Positives = 134/168 (79%)

Query: 8   YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 67
           YD LFKLLLIGDSGVGK+C+L RF+DD +  ++ISTIG+DFKI+T+EL GK IKLQIWDT
Sbjct: 6   YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDT 65

Query: 68  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 127
           AGQERF TIT+SYYRGA GI++VYD+T+ +SF N+ +WL+ ID +A+E+V ++L+GNKCD
Sbjct: 66  AGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCD 125

Query: 128 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 175
           +  K+VV      + A   GI F ETSAK   N+E++F+T+A +I ++
Sbjct: 126 MDDKRVVPKGKGGQIAREHGIRFFETSAKANINIEKAFLTLAEDILRK 173


>gi|5803135 RAB35, member RAS oncogene family [Homo sapiens]
          Length = 201

 Score =  211 bits (537), Expect = 3e-55
 Identities = 109/202 (53%), Positives = 143/202 (70%), Gaps = 1/202 (0%)

Query: 4   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63
           M  +YD+LFKLL+IGDSGVGKS LLLRFAD+T++ SYI+TIGVDFKIRT+E++G+ +KLQ
Sbjct: 1   MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQ 60

Query: 64  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 123
           IWDTAGQERFRTITS+YYRG HG+IVVYDVT  ESF NVK+WL EI++   ++V ++LVG
Sbjct: 61  IWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVG 119

Query: 124 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAG 183
           NK D   +KVV+   A +FA  +GI   ETSAK   NVE+ F  +   + +         
Sbjct: 120 NKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQ 179

Query: 184 GAEKSNVKIQSTPVKQSGGGCC 205
             ++ N  ++ T   +    CC
Sbjct: 180 QQQQQNDVVKLTKNSKRKKRCC 201


>gi|4506367 RAB3A, member RAS oncogene family [Homo sapiens]
          Length = 220

 Score =  194 bits (492), Expect = 6e-50
 Identities = 93/203 (45%), Positives = 136/203 (66%), Gaps = 6/203 (2%)

Query: 3   SMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 62
           S +  +DY+FK+L+IG+S VGK+  L R+ADD++T +++ST+G+DFK++TI  + K IKL
Sbjct: 14  SSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKL 73

Query: 63  QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLV 122
           QIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   LLV
Sbjct: 74  QIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLV 133

Query: 123 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPG--- 179
           GNKCD+  ++VV     ++ AD LG  F E SAK+  NV+Q+F  +   I ++M      
Sbjct: 134 GNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDT 193

Query: 180 ---ATAGGAEKSNVKIQSTPVKQ 199
              A  G  +   +  Q  P  Q
Sbjct: 194 ADPAVTGAKQGPQLSDQQVPPHQ 216


>gi|19923985 RAB3C, member RAS oncogene family [Homo sapiens]
          Length = 227

 Score =  193 bits (491), Expect = 8e-50
 Identities = 91/197 (46%), Positives = 136/197 (69%), Gaps = 3/197 (1%)

Query: 3   SMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 62
           S +  +DY+FKLL+IG+S VGK+  L R+ADD++T +++ST+G+DFK++T+  + K IKL
Sbjct: 22  SSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKL 81

Query: 63  QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLV 122
           QIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   +LV
Sbjct: 82  QIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILV 141

Query: 123 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGA-- 180
           GNKCD+  ++V+     +   + LG  F ETSAK+  NV+Q+F  +   I  +M      
Sbjct: 142 GNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLET 201

Query: 181 -TAGGAEKSNVKIQSTP 196
             A  A K N +++ TP
Sbjct: 202 DPAITAAKQNTRLKETP 218


>gi|4759000 RAB3D, member RAS oncogene family [Homo sapiens]
          Length = 219

 Score =  189 bits (480), Expect = 1e-48
 Identities = 92/201 (45%), Positives = 129/201 (64%), Gaps = 3/201 (1%)

Query: 8   YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 67
           +DY+FKLLLIG+S VGK+  L R+ADD++T +++ST+G+DFK++T+    K IKLQIWDT
Sbjct: 19  FDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDT 78

Query: 68  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 127
           AGQER+RTIT++YYRGA G +++YD+ +QESF  V+ W  +I  Y+ +N   +LVGNKCD
Sbjct: 79  AGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCD 138

Query: 128 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEK 187
           L  ++VV     +  AD LG  F E SAK   NV+Q F  +   I ++M        +  
Sbjct: 139 LEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNESLEPSSSSG 198

Query: 188 SNVK---IQSTPVKQSGGGCC 205
           SN K   +   P  Q     C
Sbjct: 199 SNGKGPAVGDAPAPQPSSCSC 219


>gi|4506365 RAB2A, member RAS oncogene family [Homo sapiens]
          Length = 212

 Score =  187 bits (476), Expect = 4e-48
 Identities = 95/210 (45%), Positives = 138/210 (65%), Gaps = 12/210 (5%)

Query: 8   YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 67
           Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R I +DGK IKLQIWDT
Sbjct: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 62

Query: 68  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 127
           AGQE FR+IT SYYRGA G ++VYD+T +++FN++  WL++  ++++ N+  +L+GNK D
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSD 122

Query: 128 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEK 187
           L +++ V     + FA   G+ F+ETSAK A+NVE++F+  A EI +++  G      E 
Sbjct: 123 LESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEA 182

Query: 188 SNVKIQSTPV------------KQSGGGCC 205
           + +KI                 +Q+GGGCC
Sbjct: 183 NGIKIGPQHAATNATHAGNQGGQQAGGGCC 212


>gi|19923750 RAB3B, member RAS oncogene family [Homo sapiens]
          Length = 219

 Score =  186 bits (473), Expect = 9e-48
 Identities = 89/201 (44%), Positives = 131/201 (65%), Gaps = 4/201 (1%)

Query: 8   YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 67
           +DY+FKLL+IG+S VGK+  L R+ADDT+T +++ST+G+DFK++T+    K +KLQIWDT
Sbjct: 19  FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDT 78

Query: 68  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 127
           AGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   +LVGNKCD
Sbjct: 79  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCD 138

Query: 128 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAG---- 183
           +  ++VV     +  A+ LG  F E SAK   +V Q+F  +   I  +M           
Sbjct: 139 MEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDSLDTDPSML 198

Query: 184 GAEKSNVKIQSTPVKQSGGGC 204
           G+ K+     + P+ Q    C
Sbjct: 199 GSSKNTRLSDTPPLLQQNCSC 219


>gi|239915976 RAB19, member RAS oncogene family [Homo sapiens]
          Length = 217

 Score =  186 bits (471), Expect = 2e-47
 Identities = 90/196 (45%), Positives = 133/196 (67%), Gaps = 2/196 (1%)

Query: 8   YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 67
           +DYLFK++LIGDS VGK+C++  F    YTE+  +TIGVDF +R++++DGK +K+Q+WDT
Sbjct: 14  FDYLFKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLDIDGKKVKMQVWDT 73

Query: 68  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 127
           AGQERFRTIT SYYR AH  I+ YD+T + +F ++  W+ EI++Y + NV  +L+GNKCD
Sbjct: 74  AGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESIPHWIHEIEKYGAANVVIMLIGNKCD 133

Query: 128 LTTKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAE 186
           L  K+ V +  A   A+  G +  LETSAK + N+E+ F+ MA E+  R       G + 
Sbjct: 134 LWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIEEVFVLMAKELIAR-NSLHLYGESA 192

Query: 187 KSNVKIQSTPVKQSGG 202
            + + + S+PV  + G
Sbjct: 193 LNGLPLDSSPVLMAQG 208


>gi|4758984 Ras-related protein Rab-11A [Homo sapiens]
          Length = 216

 Score =  184 bits (466), Expect = 6e-47
 Identities = 91/172 (52%), Positives = 124/172 (72%)

Query: 1   MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI 60
           M + + EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+I++DGKTI
Sbjct: 1   MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60

Query: 61  KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKL 120
           K QIWDTAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL+E+  +A  N+  +
Sbjct: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 120

Query: 121 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 172
           LVGNK DL   + V    A+ FA+  G+ F+ETSA ++TNVE +F T+  EI
Sbjct: 121 LVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 172


>gi|21361884 RAB2B protein isoform 1 [Homo sapiens]
          Length = 216

 Score =  183 bits (465), Expect = 8e-47
 Identities = 90/185 (48%), Positives = 129/185 (69%)

Query: 8   YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 67
           Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R + +DGK IKLQIWDT
Sbjct: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDT 62

Query: 68  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 127
           AGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  +++S N+  +L+GNK D
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSD 122

Query: 128 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEK 187
           L +++ V     + FA   G+ F+ETSAK A NVE++F+  A EI +++  G      E 
Sbjct: 123 LESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGLFDVHNEA 182

Query: 188 SNVKI 192
           + +KI
Sbjct: 183 NGIKI 187


>gi|46361978 RAB26, member RAS oncogene family [Homo sapiens]
          Length = 256

 Score =  183 bits (464), Expect = 1e-46
 Identities = 82/169 (48%), Positives = 125/169 (73%), Gaps = 1/169 (0%)

Query: 8   YDYLFKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWD 66
           YD  FK++L+GDSGVGK+CLL+RF D  +   ++IST+G+DF+ + +++DG  +KLQ+WD
Sbjct: 60  YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 119

Query: 67  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 126
           TAGQERFR++T +YYR AH ++++YDVT++ SF+N++ WL EI  YA  +V  +L+GNK 
Sbjct: 120 TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKV 179

Query: 127 DLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 175
           D   ++VV     ++ A   G+PF+ETSAK   NV+ +F  +A E+K+R
Sbjct: 180 DSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKQR 228


>gi|50234889 RAB43 protein [Homo sapiens]
          Length = 212

 Score =  182 bits (463), Expect = 1e-46
 Identities = 90/199 (45%), Positives = 137/199 (68%), Gaps = 3/199 (1%)

Query: 7   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 66
           +YD+LFKL+L+GD+ VGK+C++ RF    ++E   STIGVDF ++T+E+ GK +KLQIWD
Sbjct: 14  QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWD 73

Query: 67  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 126
           TAGQERFRTIT SYYR A+G I+ YD+T + SF +V  W++++ +YA  N+ +LL+GNK 
Sbjct: 74  TAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKS 133

Query: 127 DLTTKKVVDYTTAKEFADSLGI-PFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGA 185
           DL+  + V    A+  A+   I   +ETSAK+++NVE++F+ +A E+  R G G      
Sbjct: 134 DLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHG-GPLFSEK 192

Query: 186 EKSNVKIQSTPVKQSGGGC 204
              ++++ S  + + G GC
Sbjct: 193 SPDHIQLNSKDIGE-GWGC 210


>gi|21361418 RAB30, member RAS oncogene family [Homo sapiens]
          Length = 203

 Score =  182 bits (462), Expect = 2e-46
 Identities = 84/166 (50%), Positives = 125/166 (75%)

Query: 7   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 66
           +YD+LFK++LIG++GVGK+CL+ RF    +     +TIGVDF I+T+E++G+ +KLQIWD
Sbjct: 5   DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWD 64

Query: 67  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 126
           TAGQERFR+IT SYYR A+ +I+ YD+T +ESF  + +WL+EI++YAS  V  +LVGNK 
Sbjct: 65  TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKI 124

Query: 127 DLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 172
           DL  ++ V    A+EF+++  + +LETSAK + NVE+ F+ +A  +
Sbjct: 125 DLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 170


>gi|190358517 RAB11B, member RAS oncogene family [Homo sapiens]
          Length = 218

 Score =  181 bits (459), Expect = 4e-46
 Identities = 96/206 (46%), Positives = 135/206 (65%), Gaps = 5/206 (2%)

Query: 1   MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI 60
           M + + EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+I++DGKTI
Sbjct: 1   MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60

Query: 61  KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKL 120
           K QIWDTAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL+E+  +A  N+  +
Sbjct: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 120

Query: 121 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI-----KKR 175
           LVGNK DL   + V    A+ FA+   + F+ETSA ++TNVE++F  +  EI     +K+
Sbjct: 121 LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 180

Query: 176 MGPGATAGGAEKSNVKIQSTPVKQSG 201
           +   A    +  +NV   S P    G
Sbjct: 181 IADRAAHDESPGNNVVDISVPPTTDG 206


>gi|54859685 RAB37, member RAS oncogene family isoform 2 [Homo
           sapiens]
          Length = 223

 Score =  180 bits (457), Expect = 7e-46
 Identities = 79/174 (45%), Positives = 126/174 (72%), Gaps = 1/174 (0%)

Query: 5   NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQ 63
           +P YD   K++L+GD+GVGK+C L++F D  +   ++I+T+G+DF+ + + +DG  +KLQ
Sbjct: 23  SPSYDLTGKVMLLGDTGVGKTCFLIQFKDGAFLSGTFIATVGIDFRNKVVTVDGVRVKLQ 82

Query: 64  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 123
           IWDTAGQERFR++T +YYR A  ++++YD+T++ SF+N++ WL EI  YA  +V  +L+G
Sbjct: 83  IWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQRDVVIMLLG 142

Query: 124 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG 177
           NK D+++++V+     +  A   G+PFLETSAK   NVE +F+ +A E+K R G
Sbjct: 143 NKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNVELAFLAIAKELKYRAG 196


>gi|106507164 RAB12, member RAS oncogene family [Homo sapiens]
          Length = 244

 Score =  178 bits (452), Expect = 2e-45
 Identities = 88/189 (46%), Positives = 130/189 (68%), Gaps = 1/189 (0%)

Query: 9   DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 68
           D+  ++++IG  GVGK+ L+ RF DDT+ E+  ST+GVDFKI+T+EL GK I+LQIWDTA
Sbjct: 40  DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 99

Query: 69  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 128
           GQERF +ITS+YYR A GII+VYD+T +E+F+++ +W++ ID+YASE+   LLVGNK D 
Sbjct: 100 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 159

Query: 129 TTKKVVDYTTAKEFADSL-GIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEK 187
            T + +     ++FA  + G+ F E SAK+  NV++ F+ +  +I K+M           
Sbjct: 160 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLDILRNELSN 219

Query: 188 SNVKIQSTP 196
           S + +Q  P
Sbjct: 220 SILSLQPEP 228


>gi|19923483 GTPase Rab14 [Homo sapiens]
          Length = 215

 Score =  175 bits (444), Expect = 2e-44
 Identities = 90/202 (44%), Positives = 126/202 (62%), Gaps = 2/202 (0%)

Query: 1   MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI 60
           M++    Y Y+FK ++IGD GVGKSCLL +F +  +      TIGV+F  R IE+ G+ I
Sbjct: 1   MATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKI 60

Query: 61  KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKL 120
           KLQIWDTAGQERFR +T SYYRGA G ++VYD+T + ++N++  WL +     + N   +
Sbjct: 61  KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVII 120

Query: 121 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGA 180
           L+GNK DL  ++ V Y  AK+FA+  G+ FLE SAK   NVE +F+  A +I + +  G+
Sbjct: 121 LIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGS 180

Query: 181 TAGGAEKSNVKIQSTPVKQSGG 202
               A +S V  Q  P    GG
Sbjct: 181 LDLNAAESGV--QHKPSAPQGG 200


>gi|10880989 RAB18, member RAS oncogene family [Homo sapiens]
          Length = 206

 Score =  168 bits (426), Expect = 3e-42
 Identities = 89/193 (46%), Positives = 121/193 (62%), Gaps = 4/193 (2%)

Query: 13  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 72
           K+L+IG+SGVGKS LLLRF DDT+     +TIGVDFK++TI +DG   KL IWDTAGQER
Sbjct: 10  KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 69

Query: 73  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN-VNKLLVGNKCDLTTK 131
           FRT+T SYYRGA G+I+VYDVT +++F  +  WL E++ Y + N +  +LVGNK D   +
Sbjct: 70  FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENR 129

Query: 132 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVK 191
           + VD     +FA    + F+E SAK    V+ +F  +  +I +   PG      +   VK
Sbjct: 130 E-VDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT--PGLWESENQNKGVK 186

Query: 192 IQSTPVKQSGGGC 204
           +      Q GG C
Sbjct: 187 LSHREEGQGGGAC 199


>gi|82659107 ras-related GTP-binding protein 4b [Homo sapiens]
          Length = 213

 Score =  168 bits (426), Expect = 3e-42
 Identities = 82/176 (46%), Positives = 116/176 (65%)

Query: 4   MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63
           M   YD+LFK L+IG +G GKSCLL +F ++ + +    TIGV+F  R + + GKT+KLQ
Sbjct: 1   MAETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQ 60

Query: 64  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 123
           IWDTAGQERFR++T SYYRGA G ++VYD+T +E++N++  WL +    AS N+  +L G
Sbjct: 61  IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCG 120

Query: 124 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPG 179
           NK DL  ++ V +  A  FA    + FLETSA    NVE++F+  A  I  ++  G
Sbjct: 121 NKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSG 176


>gi|19923262 RAB5A, member RAS oncogene family [Homo sapiens]
          Length = 215

 Score =  167 bits (423), Expect = 6e-42
 Identities = 85/194 (43%), Positives = 119/194 (61%), Gaps = 1/194 (0%)

Query: 12  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 71
           FKL+L+G+S VGKS L+LRF    + E   STIG  F  +T+ LD  T+K +IWDTAGQE
Sbjct: 21  FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 80

Query: 72  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 131
           R+ ++   YYRGA   IVVYD+T++ESF   K W++E+ R AS N+   L GNK DL  K
Sbjct: 81  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 140

Query: 132 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVK 191
           + VD+  A+ +AD   + F+ETSAK + NV + FM +A ++ K       A  A    V 
Sbjct: 141 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSARGRGVD 200

Query: 192 IQSTPVKQSGGGCC 205
           + + P + +   CC
Sbjct: 201 L-TEPTQPTRNQCC 213


>gi|19923260 RAB4A, member RAS oncogene family [Homo sapiens]
          Length = 218

 Score =  166 bits (420), Expect = 1e-41
 Identities = 86/194 (44%), Positives = 122/194 (62%), Gaps = 10/194 (5%)

Query: 2   SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIK 61
           ++M+  YD+LFK L+IG++G GKSCLL +F +  + +    TIGV+F  + I + GK +K
Sbjct: 4   TAMSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVK 63

Query: 62  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 121
           LQIWDTAGQERFR++T SYYRGA G ++VYD+T +E++N +  WL +    AS+N+  +L
Sbjct: 64  LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIIL 123

Query: 122 VGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI--------- 172
            GNK DL   + V +  A  FA    + FLETSA    NVE++F+  A +I         
Sbjct: 124 CGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGEL 183

Query: 173 -KKRMGPGATAGGA 185
             +RMG G   G A
Sbjct: 184 DPERMGSGIQYGDA 197


>gi|41393614 RAB5C, member RAS oncogene family isoform a [Homo
           sapiens]
          Length = 216

 Score =  165 bits (418), Expect = 2e-41
 Identities = 85/195 (43%), Positives = 120/195 (61%), Gaps = 3/195 (1%)

Query: 12  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 71
           FKL+L+G+S VGKS L+LRF    + E   STIG  F  +T+ LD  T+K +IWDTAGQE
Sbjct: 22  FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 81

Query: 72  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 131
           R+ ++   YYRGA   IVVYD+T+ ++F   K W++E+ R AS N+   L GNK DL +K
Sbjct: 82  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 141

Query: 132 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVK 191
           + V++  A+ +AD   + F+ETSAK A NV + FM +A ++ K     AT        V 
Sbjct: 142 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGRNRGVD 201

Query: 192 IQ-STPVKQSGGGCC 205
           +Q + P  +S   CC
Sbjct: 202 LQENNPASRS--QCC 214


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.132    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,774,798
Number of Sequences: 37866
Number of extensions: 242346
Number of successful extensions: 1207
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 797
Number of HSP's gapped (non-prelim): 283
length of query: 205
length of database: 18,247,518
effective HSP length: 97
effective length of query: 108
effective length of database: 14,574,516
effective search space: 1574047728
effective search space used: 1574047728
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.