Guide to the Human Genome
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Name: SLC35F5 Sequence: fasta or formatted (523aa) NCBI GI: 21361959
Description:

solute carrier family 35, member F5

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         34           2
 C cysteine            1.9         10           1
 D aspartate           3.3         17           1
 E glutamate           4.0         21           1
 F phenylalanine       8.2         43           3
 G glycine             5.7         30           2
 H histidine           1.5          8           1
 I isoleucine          6.7         35           3
 K lysine              4.6         24           2
 L leucine            11.7         61           4
 M methionine          3.3         17           1
 N asparagine          3.1         16           2
 P proline             4.4         23           2
 Q glutamine           3.1         16           2
 R arginine            5.5         29           3
 S serine              9.6         50           3
 T threonine           5.4         28           2
 V valine              7.6         40           2
 W tryptophan          1.9         10           1
 Y tyrosine            2.1         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 35, member F5 
SLC35F3               0.033   solute carrier family 35, member F3 
SLC35F4               0.031   solute carrier family 35, member F4 
SLC35F2               0.014   solute carrier family 35, member F2 
TMOD1                 0.010   tropomodulin 1 
RHBG                  0.008   Rhesus blood group, B glycoprotein 
FEM1A                 0.005   fem-1 homolog a 
PTPN13                0.004   protein tyrosine phosphatase, non-receptor type 13 i...
PTPN13                0.004   protein tyrosine phosphatase, non-receptor type 13 i...
PTPN13                0.004   protein tyrosine phosphatase, non-receptor type 13 i...
PTPN13                0.004   protein tyrosine phosphatase, non-receptor type 13 is...
RARG                  0.004   retinoic acid receptor, gamma isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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