Guide to the Human Genome
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Name: OSCP1 Sequence: fasta or formatted (389aa) NCBI GI: 45643133
Description:

oxidored-nitro domain-containing protein isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {223aa} oxidored-nitro domain-containing protein isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         18           2
 C cysteine            0.3          1           1
 D aspartate           4.9         19           2
 E glutamate           9.0         35           4
 F phenylalanine       4.9         19           2
 G glycine             6.2         24           2
 H histidine           1.3          5           1
 I isoleucine          5.1         20           2
 K lysine              6.2         24           2
 L leucine            12.6         49           2
 M methionine          4.1         16           2
 N asparagine          4.9         19           3
 P proline             5.1         20           1
 Q glutamine           5.1         20           2
 R arginine            6.2         24           1
 S serine              5.4         21           2
 T threonine           5.4         21           2
 V valine              5.4         21           1
 W tryptophan          0.8          3           1
 Y tyrosine            2.6         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   oxidored-nitro domain-containing protein isoform 1 [... 
OSCP1                 0.411   oxidored-nitro domain-containing protein isoform 2 [...
UBE2N                 0.011   ubiquitin-conjugating enzyme E2N 
C20orf194             0.008   hypothetical protein LOC25943 
UBE2NL                0.008   ubiquitin-conjugating enzyme E2N-like 
GON4L                 0.007   gon-4-like isoform a 
GON4L                 0.007   gon-4-like isoform b 
CHST10                0.007   HNK-1 sulfotransferase 
DSP                   0.007   desmoplakin isoform I 
TRIP11                0.007   thyroid hormone receptor interactor 11 
CCHCR1                0.007   coiled-coil alpha-helical rod protein 1 isoform 1 [...
CCHCR1                0.007   coiled-coil alpha-helical rod protein 1 isoform 2 [...
CCHCR1                0.007   coiled-coil alpha-helical rod protein 1 isoform 3 [...
ASAP2                 0.005   ArfGAP with SH3 domain, ankyrin repeat and PH domai...
ASAP2                 0.005   ArfGAP with SH3 domain, ankyrin repeat and PH domain ...
VGLL3                 0.005   colon carcinoma related protein 
ESF1                  0.005   ABT1-associated protein 
CHD9                  0.005   chromodomain helicase DNA binding protein 9 
LOC643677             0.005   hypothetical protein LOC643677 
LOC643677             0.005   PREDICTED: hypothetical protein LOC643677 
LOC643677             0.005   PREDICTED: hypothetical protein LOC643677 
LOC643677             0.005   PREDICTED: hypothetical protein LOC643677 
UBR3                  0.005   E3 ubiquitin-protein ligase UBR3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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