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Search of human proteins with 4758436
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4758436 gastric inhibitory polypeptide preproprotein [Homo
sapiens]
(153 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4758436 gastric inhibitory polypeptide preproprotein [Homo sa... 305 1e-83
gi|4503945 glucagon preproprotein [Homo sapiens] 45 3e-05
gi|194294523 intersectin 2 isoform 3 [Homo sapiens] 31 0.36
gi|194294521 intersectin 2 isoform 1 [Homo sapiens] 31 0.36
gi|194294525 intersectin 2 isoform 2 [Homo sapiens] 31 0.36
gi|31324577 molecule interacting with Rab13 [Homo sapiens] 30 0.62
gi|33620755 YEATS domain containing 2 [Homo sapiens] 30 1.1
gi|23397642 GREB1 protein isoform a [Homo sapiens] 29 1.4
gi|157738619 smoothelin-like 1 [Homo sapiens] 29 1.4
gi|4757900 calreticulin precursor [Homo sapiens] 28 2.3
gi|55741709 RNA binding motif protein 25 [Homo sapiens] 28 3.1
gi|239757254 PREDICTED: hypothetical protein [Homo sapiens] 28 4.0
gi|21361684 G patch domain containing 1 [Homo sapiens] 28 4.0
gi|223278381 ribosomal RNA processing 12 homolog isoform 2 [Homo... 27 5.2
gi|223278379 ribosomal RNA processing 12 homolog isoform 1 [Homo... 27 5.2
gi|41872631 fatty acid synthase [Homo sapiens] 27 5.2
gi|64276808 ADAM metallopeptidase with thrombospondin type 1 mot... 27 5.2
gi|9951927 adducin 3 (gamma) isoform b [Homo sapiens] 27 6.8
gi|62912453 adducin 3 (gamma) isoform b [Homo sapiens] 27 6.8
gi|9943848 adducin 3 (gamma) isoform a [Homo sapiens] 27 6.8
gi|17402882 deoxyribonuclease II beta isoform 2 [Homo sapiens] 27 6.8
gi|194473657 deoxyribonuclease II beta isoform 1 precursor [Homo... 27 6.8
gi|87116683 proline/serine-rich coiled-coil 2 [Homo sapiens] 27 6.8
gi|148806908 fibronectin type III domain containing 1 [Homo sapi... 27 8.9
gi|33356174 pinin, desmosome associated protein [Homo sapiens] 27 8.9
gi|104526627 triadin [Homo sapiens] 27 8.9
gi|32567784 T-box 10 [Homo sapiens] 27 8.9
>gi|4758436 gastric inhibitory polypeptide preproprotein [Homo
sapiens]
Length = 153
Score = 305 bits (781), Expect = 1e-83
Identities = 153/153 (100%), Positives = 153/153 (100%)
Query: 1 MVATKTFALLLLSLFLAVGLGEKKEGHFSALPSLPVGSHAKVSSPQPRGPRYAEGTFISD 60
MVATKTFALLLLSLFLAVGLGEKKEGHFSALPSLPVGSHAKVSSPQPRGPRYAEGTFISD
Sbjct: 1 MVATKTFALLLLSLFLAVGLGEKKEGHFSALPSLPVGSHAKVSSPQPRGPRYAEGTFISD 60
Query: 61 YSIAMDKIHQQDFVNWLLAQKGKKNDWKHNITQREARALELASQANRKEEEAVEPQSSPA 120
YSIAMDKIHQQDFVNWLLAQKGKKNDWKHNITQREARALELASQANRKEEEAVEPQSSPA
Sbjct: 61 YSIAMDKIHQQDFVNWLLAQKGKKNDWKHNITQREARALELASQANRKEEEAVEPQSSPA 120
Query: 121 KNPSDEDLLRDLLIQELLACLLDQTNLCRLRSR 153
KNPSDEDLLRDLLIQELLACLLDQTNLCRLRSR
Sbjct: 121 KNPSDEDLLRDLLIQELLACLLDQTNLCRLRSR 153
>gi|4503945 glucagon preproprotein [Homo sapiens]
Length = 180
Score = 44.7 bits (104), Expect = 3e-05
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 22 EKKEGHFSALPSLPVGSHAKVSSPQPRGPRYAEGTFISDYSIAMDKIHQQDFVNWLLAQK 81
E+K FSA + P+ +++ + R+++GTF SDYS +D QDFV WL+ K
Sbjct: 27 EEKSRSFSASQADPLSDPDQMNEDK----RHSQGTFTSDYSKYLDSRRAQDFVQWLMNTK 82
Query: 82 GKKND--WKHNITQREARALELASQANRKEEEAVE 114
+N+ +H+ +R A + ++ E +A +
Sbjct: 83 RNRNNIAKRHDEFERHAEGTFTSDVSSYLEGQAAK 117
Score = 34.7 bits (78), Expect = 0.033
Identities = 13/41 (31%), Positives = 26/41 (63%)
Query: 41 KVSSPQPRGPRYAEGTFISDYSIAMDKIHQQDFVNWLLAQK 81
+V+ + G R+A+G+F + + +D + +DF+NWL+ K
Sbjct: 135 EVAIVEELGRRHADGSFSDEMNTILDNLAARDFINWLIQTK 175
Score = 32.7 bits (73), Expect = 0.12
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 51 RYAEGTFISDYSIAMDKIHQQDFVNWLLAQKGKKN 85
R+AEGTF SD S ++ ++F+ WL+ +G+++
Sbjct: 97 RHAEGTFTSDVSSYLEGQAAKEFIAWLVKGRGRRD 131
>gi|194294523 intersectin 2 isoform 3 [Homo sapiens]
Length = 1670
Score = 31.2 bits (69), Expect = 0.36
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 79 AQKGKKNDWKHNITQREARALELASQANRKEEEAVEPQSSPAKNPSDEDLLR 130
A++GK+N WK N+ + E + + +E+ E + + K D+D L+
Sbjct: 669 AKQGKENLWKENLRKEEEEKQKRLQEEKTQEKIQEEERKAEEKQRKDKDTLK 720
>gi|194294521 intersectin 2 isoform 1 [Homo sapiens]
Length = 1697
Score = 31.2 bits (69), Expect = 0.36
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 79 AQKGKKNDWKHNITQREARALELASQANRKEEEAVEPQSSPAKNPSDEDLLR 130
A++GK+N WK N+ + E + + +E+ E + + K D+D L+
Sbjct: 696 AKQGKENLWKENLRKEEEEKQKRLQEEKTQEKIQEEERKAEEKQRKDKDTLK 747
>gi|194294525 intersectin 2 isoform 2 [Homo sapiens]
Length = 1249
Score = 31.2 bits (69), Expect = 0.36
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 79 AQKGKKNDWKHNITQREARALELASQANRKEEEAVEPQSSPAKNPSDEDLLR 130
A++GK+N WK N+ + E + + +E+ E + + K D+D L+
Sbjct: 696 AKQGKENLWKENLRKEEEEKQKRLQEEKTQEKIQEEERKAEEKQRKDKDTLK 747
>gi|31324577 molecule interacting with Rab13 [Homo sapiens]
Length = 863
Score = 30.4 bits (67), Expect = 0.62
Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Query: 88 KHNITQREARALELASQANRKEEEA-VEPQ-----SSPAKNPSDEDLLRDLLIQELLACL 141
KH + +RE+ + + Q N ++ +A VE + + P K+ ++ED R+ ++ + L L
Sbjct: 732 KHLLVRRESELIYVFKQQNLEQRQADVEYELRCLLNKPEKDWTEEDRAREKVLMQELVTL 791
Query: 142 LDQTN 146
++Q N
Sbjct: 792 IEQRN 796
>gi|33620755 YEATS domain containing 2 [Homo sapiens]
Length = 1422
Score = 29.6 bits (65), Expect = 1.1
Identities = 12/27 (44%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Query: 22 EKKEGHFSALPSL-PVGSHAKVSSPQP 47
++++ F+++P L P+GSH KV SP+P
Sbjct: 552 KQEDSLFASMPPLCPIGSHPKVQSPKP 578
>gi|23397642 GREB1 protein isoform a [Homo sapiens]
Length = 1949
Score = 29.3 bits (64), Expect = 1.4
Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 21 GEKKEGHFSALPS-LPVGSHAKVSSPQPRGP 50
G G SA P+ LP G HA+ SPQPRGP
Sbjct: 1138 GSALGGESSAQPTALPQGEHAR--SPQPRGP 1166
>gi|157738619 smoothelin-like 1 [Homo sapiens]
Length = 512
Score = 29.3 bits (64), Expect = 1.4
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 82 GKKNDWKHNITQREARALELASQANRKEEEAVEPQSSPAKNPSDED 127
G+K + K + E + LAS+ + EE+ +P+S + +D D
Sbjct: 131 GRKEETKSEPKEAEEKESTLASEKQKAEEKEAKPESGQKADANDRD 176
>gi|4757900 calreticulin precursor [Homo sapiens]
Length = 417
Score = 28.5 bits (62), Expect = 2.3
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Query: 55 GTFISDYSIAMDKIHQQDFVN--WLLAQKGKKNDWKHNITQREARALELASQANRKEEEA 112
GT ++ I D+ + ++F N W + + +K + E R E RKEEE
Sbjct: 324 GTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQ--MKDKQDEEQRLKEEEEDKKRKEEEE 381
Query: 113 VEPQSSPAKNPSDED 127
E + DE+
Sbjct: 382 AEDKEDDEDKDEDEE 396
>gi|55741709 RNA binding motif protein 25 [Homo sapiens]
Length = 843
Score = 28.1 bits (61), Expect = 3.1
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 69 HQQDFVNWLLAQKGKKNDWKHNITQREARALELASQANRKEE 110
+Q+ NW + ++ K +++ + E R E+A +A R +E
Sbjct: 457 YQERLKNWEIRERKKTREYEKEAEREEERRREMAKEAKRLKE 498
>gi|239757254 PREDICTED: hypothetical protein [Homo sapiens]
Length = 247
Score = 27.7 bits (60), Expect = 4.0
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 29 SALPSLPVGSHAKVSSPQPRGP 50
++L SLP GSH SP+PR P
Sbjct: 79 ASLLSLPYGSHRHPPSPRPRDP 100
>gi|21361684 G patch domain containing 1 [Homo sapiens]
Length = 931
Score = 27.7 bits (60), Expect = 4.0
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 10/69 (14%)
Query: 80 QKGKKNDWKHNITQREARALE----------LASQANRKEEEAVEPQSSPAKNPSDEDLL 129
+K KKN KH + R E Q N+K E++ +SS + + ++
Sbjct: 852 EKHKKNKDKHKAKKEHRRKKEKKKKHRKHKHKGKQKNKKPEKSSSSESSDSSDSQSDEET 911
Query: 130 RDLLIQELL 138
D+ QELL
Sbjct: 912 ADVSPQELL 920
>gi|223278381 ribosomal RNA processing 12 homolog isoform 2 [Homo
sapiens]
Length = 1236
Score = 27.3 bits (59), Expect = 5.2
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 90 NITQREARALE--LASQANRKEEEAVEPQSSPAKNPSD--EDLLRD 131
NI + EARA SQA +EEE E + PA+ D E++L D
Sbjct: 973 NIRKAEARAKRHRALSQAAVEEEEEEEEEEEPAQGKGDSIEEILAD 1018
>gi|223278379 ribosomal RNA processing 12 homolog isoform 1 [Homo
sapiens]
Length = 1297
Score = 27.3 bits (59), Expect = 5.2
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 90 NITQREARALE--LASQANRKEEEAVEPQSSPAKNPSD--EDLLRD 131
NI + EARA SQA +EEE E + PA+ D E++L D
Sbjct: 1034 NIRKAEARAKRHRALSQAAVEEEEEEEEEEEPAQGKGDSIEEILAD 1079
>gi|41872631 fatty acid synthase [Homo sapiens]
Length = 2511
Score = 27.3 bits (59), Expect = 5.2
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 12 LSLFLAVGLGEKKEGHFSALPSLPVGSHAKVSSPQPRGPRYAEGTFISDYSIAMDKIHQQ 71
L FLA G+G H S + + P V P PRG D+S+A D +
Sbjct: 793 LEFFLA-GIGRL---HLSGIDANPNALFPPVEFPAPRGTPLISPLIKWDHSLAWDVPAAE 848
Query: 72 DFVN 75
DF N
Sbjct: 849 DFPN 852
>gi|64276808 ADAM metallopeptidase with thrombospondin type 1 motif,
6 preproprotein [Homo sapiens]
Length = 1117
Score = 27.3 bits (59), Expect = 5.2
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 18/114 (15%)
Query: 25 EGHFSALPSLPVGSHAKVSSPQPRGPRYAEGTFISDYSIAMDKIHQQDFVNWLLAQKGKK 84
EG F+ SLP G + +V PRG + E +AM K + +A K +
Sbjct: 720 EGFFN--DSLPRGGYMEVVQI-PRGSVHIEVR-----EVAMSKNY--------IALKSEG 763
Query: 85 NDWKHN--ITQREARALELASQANRKEEEAVEPQSSPAKNPSDEDLLRDLLIQE 136
+D+ N T R ++A A + EP+S A P+ E+L+ +L+QE
Sbjct: 764 DDYYINGAWTIDWPRKFDVAGTAFHYKRPTDEPESLEALGPTSENLIVMVLLQE 817
>gi|9951927 adducin 3 (gamma) isoform b [Homo sapiens]
Length = 674
Score = 26.9 bits (58), Expect = 6.8
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 99 LELASQANRKEEEAVEPQSSPAKNPS 124
+E+ ++ K EE + P+ SP+K+PS
Sbjct: 626 IEITIKSPEKIEEVLSPEGSPSKSPS 651
>gi|62912453 adducin 3 (gamma) isoform b [Homo sapiens]
Length = 674
Score = 26.9 bits (58), Expect = 6.8
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 99 LELASQANRKEEEAVEPQSSPAKNPS 124
+E+ ++ K EE + P+ SP+K+PS
Sbjct: 626 IEITIKSPEKIEEVLSPEGSPSKSPS 651
>gi|9943848 adducin 3 (gamma) isoform a [Homo sapiens]
Length = 706
Score = 26.9 bits (58), Expect = 6.8
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 99 LELASQANRKEEEAVEPQSSPAKNPS 124
+E+ ++ K EE + P+ SP+K+PS
Sbjct: 658 IEITIKSPEKIEEVLSPEGSPSKSPS 683
>gi|17402882 deoxyribonuclease II beta isoform 2 [Homo sapiens]
Length = 153
Score = 26.9 bits (58), Expect = 6.8
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 71 QDFVNWLLAQKGKKNDW 87
QD W ++QKG KN W
Sbjct: 95 QDHAKWCISQKGTKNRW 111
>gi|194473657 deoxyribonuclease II beta isoform 1 precursor [Homo
sapiens]
Length = 361
Score = 26.9 bits (58), Expect = 6.8
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 71 QDFVNWLLAQKGKKNDW 87
QD W ++QKG KN W
Sbjct: 303 QDHAKWCISQKGTKNRW 319
>gi|87116683 proline/serine-rich coiled-coil 2 [Homo sapiens]
Length = 1989
Score = 26.9 bits (58), Expect = 6.8
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 26 GHFSALPSLPVGSHAKVSSPQPRGPRYAEGTFIS 59
G+FS PSL + +VSS P Y EG +S
Sbjct: 558 GYFSPAPSLSLPPPPQVSSLPPLSQPYVEGLCVS 591
>gi|148806908 fibronectin type III domain containing 1 [Homo
sapiens]
Length = 1894
Score = 26.6 bits (57), Expect = 8.9
Identities = 28/101 (27%), Positives = 37/101 (36%), Gaps = 11/101 (10%)
Query: 32 PSLPVGSHAKVSSPQPRGPRYAEGTFISDYSIAMDKIHQQDFVNWLLAQKGKKNDWKHNI 91
PS P A SS P P +G D + D N +LA G K +
Sbjct: 477 PSSP-SPRAPASSQHPSVPASPQGRNAKDLLL--------DLKNKILANGGAPR--KPQL 525
Query: 92 TQREARALELASQANRKEEEAVEPQSSPAKNPSDEDLLRDL 132
++A L+L S EEE + SP +D R L
Sbjct: 526 RAKKAEELDLQSTEITGEEELGSREDSPMSPSDTQDQKRTL 566
>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
Length = 717
Score = 26.6 bits (57), Expect = 8.9
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 98 ALELASQANRKEEEAVEPQSSPAKNPSDE 126
AL++ ++ KEE+ EPQ P P +
Sbjct: 451 ALDMEKESEEKEEKESEPQPEPVAQPQPQ 479
>gi|104526627 triadin [Homo sapiens]
Length = 729
Score = 26.6 bits (57), Expect = 8.9
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 77 LLAQKGKKNDWKHNITQREARALELASQANRKEEEA---VEPQSSPAKN---PSDEDL 128
+ AQ K D K +++ + E+ +K+E+ VEP SP K PSD+ +
Sbjct: 365 IAAQAAAKKDEKKEDSKKTKKPAEVEQPKGKKQEKKEKHVEPAKSPKKEHSVPSDKQV 422
>gi|32567784 T-box 10 [Homo sapiens]
Length = 385
Score = 26.6 bits (57), Expect = 8.9
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 12 LSLFLAVGLGEKKEGHFSALPSLPVGSHAKVSSPQPRGP 50
++ FL+ GLG LP+ G ++ SP P GP
Sbjct: 1 MAAFLSAGLGILAPSETYPLPTTSSGWEPRLGSPFPSGP 39
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.131 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,053,853
Number of Sequences: 37866
Number of extensions: 264627
Number of successful extensions: 1254
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1229
Number of HSP's gapped (non-prelim): 33
length of query: 153
length of database: 18,247,518
effective HSP length: 93
effective length of query: 60
effective length of database: 14,725,980
effective search space: 883558800
effective search space used: 883558800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.