Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CRYBB3 Sequence: fasta or formatted (211aa) NCBI GI: 4758074
Description:

crystallin, beta B3

Referenced in:

Crystallins and Other Eye Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         14           3
 C cysteine            0.9          2           1
 D aspartate           6.2         13           3
 E glutamate           8.1         17           1
 F phenylalanine       4.7         10           1
 G glycine             8.5         18           2
 H histidine           3.8          8           2
 I isoleucine          2.8          6           1
 K lysine              4.3          9           1
 L leucine             8.1         17           2
 M methionine          0.9          2           1
 N asparagine          2.8          6           1
 P proline             5.2         11           1
 Q glutamine           5.2         11           1
 R arginine            8.5         18           2
 S serine             10.0         21           2
 T threonine           0.9          2           1
 V valine              5.2         11           1
 W tryptophan          3.8          8           1
 Y tyrosine            3.3          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   crystallin, beta B3 
CRYBB1                0.540   crystallin, beta B1 
CRYBB2                0.524   crystallin, beta B2 
CRYBA1                0.344   crystallin, beta A3 
CRYBA4                0.287   crystallin, beta A4 
CRYBA2                0.282   crystallin, beta A2 
CRYBA2                0.282   crystallin, beta A2 
CRYBA2                0.282   crystallin, beta A2 
CRYGS                 0.225   crystallin, gamma S 
CRYGC                 0.220   crystallin, gamma C 
CRYGB                 0.206   crystallin, gamma B 
CRYGA                 0.206   crystallin, gamma A 
CRYGD                 0.192   crystallin, gamma D 
CRYBG3                0.187   beta-gamma crystallin domain containing 3 
AIM1L                 0.185   absent in melanoma 1-like 
AIM1                  0.161   absent in melanoma 1 
CRYGN                 0.156   gammaN-crystallin 
BHLHE40               0.007   basic helix-loop-helix family, member e40 
MFGE8                 0.007   milk fat globule-EGF factor 8 protein isoform b [Ho...
LOC100290838          0.007   PREDICTED: hypothetical protein XP_002347325 
TSPY2                 0.007   testis specific protein, Y-linked 2 
KIAA1671              0.007   hypothetical protein LOC85379 
LOC100292185          0.007   PREDICTED: hypothetical protein 
LOC100289134          0.007   PREDICTED: hypothetical protein XP_002343933 
ANKRD55               0.007   ankyrin repeat domain 55 isoform 1 
ANKRD55               0.007   ankyrin repeat domain 55 isoform 2 
LOC728132             0.005   PREDICTED: similar to testis specific protein, Y-li...
LOC728403             0.005   PREDICTED: similar to Testis-specific Y-encoded pro...
TSPY3                 0.005   testis specific protein, Y-linked 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press