Guide to the Human Genome
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Name: CRYGC Sequence: fasta or formatted (174aa) NCBI GI: 10518338
Description:

crystallin, gamma C

Referenced in:

Crystallins and Other Eye Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.3          4           1
 C cysteine            4.6          8           2
 D aspartate           5.7         10           1
 E glutamate           7.5         13           1
 F phenylalanine       2.3          4           1
 G glycine             6.3         11           1
 H histidine           2.3          4           1
 I isoleucine          3.4          6           1
 K lysine              1.7          3           1
 L leucine            10.9         19           2
 M methionine          3.4          6           2
 N asparagine          2.3          4           1
 P proline             4.6          8           1
 Q glutamine           6.9         12           2
 R arginine           11.5         20           2
 S serine              7.5         13           1
 T threonine           2.9          5           3
 V valine              3.4          6           2
 W tryptophan          2.3          4           1
 Y tyrosine            8.0         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   crystallin, gamma C 
CRYGB                 0.794   crystallin, gamma B 
CRYGA                 0.757   crystallin, gamma A 
CRYGD                 0.709   crystallin, gamma D 
CRYGS                 0.520   crystallin, gamma S 
AIM1L                 0.280   absent in melanoma 1-like 
CRYBA1                0.266   crystallin, beta A3 
CRYBB3                0.266   crystallin, beta B3 
CRYBB2                0.254   crystallin, beta B2 
CRYBB1                0.249   crystallin, beta B1 
CRYBA4                0.243   crystallin, beta A4 
CRYBA2                0.211   crystallin, beta A2 
CRYBA2                0.211   crystallin, beta A2 
CRYBA2                0.211   crystallin, beta A2 
CRYGN                 0.200   gammaN-crystallin 
AIM1                  0.174   absent in melanoma 1 
CRYBG3                0.160   beta-gamma crystallin domain containing 3 
PIP4K2B               0.014   phosphatidylinositol-5-phosphate 4-kinase, type II, b...
TRAF6                 0.009   TNF receptor-associated factor 6 
TRAF6                 0.009   TNF receptor-associated factor 6 
ITGB2                 0.009   integrin, beta 2 precursor 
ITGB2                 0.009   integrin, beta 2 precursor 
VARS2                 0.006   valyl-tRNA synthetase 2, mitochondrial 
ZMYM1                 0.006   zinc finger, MYM domain containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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