Guide to the Human Genome
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Name: CRYGS Sequence: fasta or formatted (178aa) NCBI GI: 8922120
Description:

crystallin, gamma S

Referenced in:

Crystallins and Other Eye Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.9          7           2
 C cysteine            3.9          7           1
 D aspartate           5.6         10           1
 E glutamate           7.9         14           1
 F phenylalanine       5.1          9           1
 G glycine             7.9         14           2
 H histidine           2.2          4           1
 I isoleucine          5.6         10           1
 K lysine              5.6         10           2
 L leucine             5.1          9           2
 M methionine          3.4          6           1
 N asparagine          2.8          5           1
 P proline             4.5          8           1
 Q glutamine           5.1          9           1
 R arginine            7.3         13           2
 S serine              6.2         11           2
 T threonine           3.9          7           2
 V valine              3.9          7           1
 W tryptophan          2.2          4           1
 Y tyrosine            7.9         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   crystallin, gamma S 
CRYGB                 0.535   crystallin, gamma B 
CRYGC                 0.504   crystallin, gamma C 
CRYGA                 0.493   crystallin, gamma A 
CRYGD                 0.482   crystallin, gamma D 
CRYBB3                0.263   crystallin, beta B3 
CRYBA1                0.260   crystallin, beta A3 
CRYBB1                0.260   crystallin, beta B1 
CRYBB2                0.258   crystallin, beta B2 
AIM1L                 0.227   absent in melanoma 1-like 
CRYBA2                0.216   crystallin, beta A2 
CRYBA2                0.216   crystallin, beta A2 
CRYBA2                0.216   crystallin, beta A2 
CRYBA4                0.205   crystallin, beta A4 
CRYGN                 0.199   gammaN-crystallin 
AIM1                  0.191   absent in melanoma 1 
CRYBG3                0.136   beta-gamma crystallin domain containing 3 
TLR8                  0.011   toll-like receptor 8 
CTPS                  0.008   CTP synthase 
PRKACA                0.008   cAMP-dependent protein kinase catalytic subunit alph...
PRKACA                0.008   cAMP-dependent protein kinase catalytic subunit alpha...
PRKACB                0.008   cAMP-dependent protein kinase catalytic subunit beta ...
PRKACB                0.008   cAMP-dependent protein kinase catalytic subunit beta...
PRKACB                0.008   cAMP-dependent protein kinase catalytic subunit beta...
ZNF611                0.008   zinc finger protein 611 isoform b 
ZNF611                0.008   zinc finger protein 611 isoform a 
ZNF611                0.008   zinc finger protein 611 isoform a 
ZNF611                0.008   zinc finger protein 611 isoform a 
GPBP1                 0.006   GC-rich promoter binding protein 1 isoform 3 
GPBP1                 0.006   GC-rich promoter binding protein 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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