Guide to the Human Genome
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Name: CRYBA4 Sequence: fasta or formatted (196aa) NCBI GI: 4503059
Description:

crystallin, beta A4

Referenced in:

Crystallins and Other Eye Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         13           2
 C cysteine            2.6          5           1
 D aspartate           4.1          8           2
 E glutamate           8.2         16           1
 F phenylalanine       6.6         13           1
 G glycine            10.7         21           2
 H histidine           4.6          9           2
 I isoleucine          2.0          4           1
 K lysine              3.1          6           2
 L leucine             6.1         12           1
 M methionine          1.5          3           1
 N asparagine          2.0          4           1
 P proline             4.1          8           1
 Q glutamine           6.6         13           2
 R arginine            6.1         12           2
 S serine              7.7         15           1
 T threonine           4.1          8           1
 V valine              5.6         11           2
 W tryptophan          4.1          8           1
 Y tyrosine            3.6          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   crystallin, beta A4 
CRYBA1                0.686   crystallin, beta A3 
CRYBA2                0.489   crystallin, beta A2 
CRYBA2                0.489   crystallin, beta A2 
CRYBA2                0.489   crystallin, beta A2 
CRYBB1                0.349   crystallin, beta B1 
CRYBB2                0.312   crystallin, beta B2 
CRYBB3                0.302   crystallin, beta B3 
CRYGB                 0.212   crystallin, gamma B 
CRYGC                 0.212   crystallin, gamma C 
AIM1L                 0.204   absent in melanoma 1-like 
CRYGA                 0.192   crystallin, gamma A 
CRYGS                 0.185   crystallin, gamma S 
AIM1                  0.180   absent in melanoma 1 
CRYGD                 0.175   crystallin, gamma D 
CRYBG3                0.160   beta-gamma crystallin domain containing 3 
CRYGN                 0.150   gammaN-crystallin 
USP11                 0.007   ubiquitin specific peptidase 11 
HS3ST1                0.005   heparan sulfate D-glucosaminyl 3-O-sulfotransferase 1...
VILL                  0.005   villin-like protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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