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Search of human proteins with 47078281
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|47078281 hypothetical protein LOC9679 [Homo sapiens]
(422 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|47078281 hypothetical protein LOC9679 [Homo sapiens] 881 0.0
gi|61966701 dorsal neural-tube nuclear protein [Homo sapiens] 143 3e-34
gi|208431810 hypothetical protein LOC51307 [Homo sapiens] 111 1e-24
gi|7706139 hypothetical protein LOC51307 [Homo sapiens] 111 1e-24
gi|239755499 PREDICTED: hypothetical protein [Homo sapiens] 35 0.098
gi|239750031 PREDICTED: hypothetical protein [Homo sapiens] 35 0.098
gi|239744342 PREDICTED: hypothetical protein XP_002343123 [Homo ... 35 0.098
gi|28559039 mediator complex subunit 1 [Homo sapiens] 35 0.13
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 35 0.17
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 35 0.17
gi|11037055 sperm associated antigen 4 [Homo sapiens] 34 0.22
gi|223005950 SH3KBP1 binding protein 1 [Homo sapiens] 33 0.37
gi|122937283 6720455I24Rik homolog [Homo sapiens] 33 0.49
gi|40548372 tetratricopeptide repeat domain 15 [Homo sapiens] 33 0.64
gi|148613886 regulatory factor X domain containing 2 [Homo sapiens] 32 0.83
gi|148612816 RecQ protein-like 5 isoform 1 [Homo sapiens] 32 0.83
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 32 0.83
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 32 0.83
gi|119220585 apical early endosomal glycoprotein precursor [Homo... 32 1.1
gi|226423889 myocardin isoform 1 [Homo sapiens] 32 1.4
gi|23957692 myocardin isoform 2 [Homo sapiens] 32 1.4
gi|33286444 mastermind-like 2 [Homo sapiens] 32 1.4
gi|153792042 G protein-coupled receptor 178 [Homo sapiens] 32 1.4
gi|4507483 thrombomodulin precursor [Homo sapiens] 31 1.9
gi|239757046 PREDICTED: similar to hCG1790759 [Homo sapiens] 31 1.9
gi|226423891 myocardin isoform 3 [Homo sapiens] 31 1.9
gi|122937247 unc-13 homolog A [Homo sapiens] 31 1.9
gi|134031945 SCO-spondin [Homo sapiens] 31 1.9
gi|45120119 microtubule associated serine/threonine kinase 1 [Ho... 31 2.4
gi|169201482 PREDICTED: similar to hCG2038970 [Homo sapiens] 31 2.4
>gi|47078281 hypothetical protein LOC9679 [Homo sapiens]
Length = 422
Score = 881 bits (2276), Expect = 0.0
Identities = 422/422 (100%), Positives = 422/422 (100%)
Query: 1 MVMVLSESLSTRGADSIACGTFSRELHTPKKMSQGPTLFSCGIMENDRWRDLDRKCPLQI 60
MVMVLSESLSTRGADSIACGTFSRELHTPKKMSQGPTLFSCGIMENDRWRDLDRKCPLQI
Sbjct: 1 MVMVLSESLSTRGADSIACGTFSRELHTPKKMSQGPTLFSCGIMENDRWRDLDRKCPLQI 60
Query: 61 DQPSTSIWECLPEKDSSLWHREAVTACAVTSLIKDLSISDHNGNPSAPPSKRQCRSLSFS 120
DQPSTSIWECLPEKDSSLWHREAVTACAVTSLIKDLSISDHNGNPSAPPSKRQCRSLSFS
Sbjct: 61 DQPSTSIWECLPEKDSSLWHREAVTACAVTSLIKDLSISDHNGNPSAPPSKRQCRSLSFS 120
Query: 121 DEMSSCRTSWRPLGSKVWTPVEKRRCYSGGSVQRYSNGFSTMQRSSSFSLPSRANVLSSP 180
DEMSSCRTSWRPLGSKVWTPVEKRRCYSGGSVQRYSNGFSTMQRSSSFSLPSRANVLSSP
Sbjct: 121 DEMSSCRTSWRPLGSKVWTPVEKRRCYSGGSVQRYSNGFSTMQRSSSFSLPSRANVLSSP 180
Query: 181 CDQAGLHHRFGGQPCQGVPGSAPCGQAGDTWSPDLHPVGGGRLDLQRSLSCSHEQFSFVE 240
CDQAGLHHRFGGQPCQGVPGSAPCGQAGDTWSPDLHPVGGGRLDLQRSLSCSHEQFSFVE
Sbjct: 181 CDQAGLHHRFGGQPCQGVPGSAPCGQAGDTWSPDLHPVGGGRLDLQRSLSCSHEQFSFVE 240
Query: 241 YCPPSANSTPASTPELARRSSGLSRSRSQPCVLNDKKVGVKRRRPEEVQEQRPSLDLAKM 300
YCPPSANSTPASTPELARRSSGLSRSRSQPCVLNDKKVGVKRRRPEEVQEQRPSLDLAKM
Sbjct: 241 YCPPSANSTPASTPELARRSSGLSRSRSQPCVLNDKKVGVKRRRPEEVQEQRPSLDLAKM 300
Query: 301 AQNCQTFSSLSCLSAGTEDCGPQSPFARHVSNTRAWTALLSASGPGGRTPAGTPVPEPLP 360
AQNCQTFSSLSCLSAGTEDCGPQSPFARHVSNTRAWTALLSASGPGGRTPAGTPVPEPLP
Sbjct: 301 AQNCQTFSSLSCLSAGTEDCGPQSPFARHVSNTRAWTALLSASGPGGRTPAGTPVPEPLP 360
Query: 361 PSFDDHLACQEDLSCEESDSCALDEDCGRRAEPAAAWRDRGAPGNSLCSLDGELDIEQIE 420
PSFDDHLACQEDLSCEESDSCALDEDCGRRAEPAAAWRDRGAPGNSLCSLDGELDIEQIE
Sbjct: 361 PSFDDHLACQEDLSCEESDSCALDEDCGRRAEPAAAWRDRGAPGNSLCSLDGELDIEQIE 420
Query: 421 KN 422
KN
Sbjct: 421 KN 422
>gi|61966701 dorsal neural-tube nuclear protein [Homo sapiens]
Length = 398
Score = 143 bits (360), Expect = 3e-34
Identities = 100/326 (30%), Positives = 155/326 (47%), Gaps = 22/326 (6%)
Query: 1 MVMVLSESLSTRGADSIACGTFSREL-HTPKKMSQGPTLFSCGIMENDRWRDLDRKCPLQ 59
MV +++E L ++ D + C + L ++ + +++ LF + + W+ P++
Sbjct: 1 MVTLITEKLQSQSLDDLTCKAEAGPLQYSAETLNKSGRLFPLELNDQSPWKVFSGGPPVR 60
Query: 60 IDQPSTSIWECLPEKDSSL------WHREAVTACAVTSLIKDLSISDHNGNPSAPPSKRQ 113
+ + LP ++ W ++ A + S+ G+ +APP+KR
Sbjct: 61 SQAATGPDFSFLPGLSAAAHTMGLQWQPQSPRPGAGLGAASTVDPSESTGSSTAPPTKRH 120
Query: 114 CRSLSFSDEMSSCRTSWRPLGSKVWTPVEKRRCYSGGSVQRYSNGFSTMQRSSSFSLPSR 173
CRSLS +E+ CR+ WRP SKVWTPV KRRC SGGS R + + + RS+ +S
Sbjct: 121 CRSLSEPEELVRCRSPWRPGSSKVWTPVSKRRCDSGGSATRQGSPGAVLPRSAVWSTGPT 180
Query: 174 ANVLSSPCDQAGLHHRFGGQPCQGVPGSAPCGQAGDTWSPDLHPVGGGRLDLQRSLSCSH 233
+ P +G +G GS P + ++ P +R S S
Sbjct: 181 SPATPRPSSASGGF----VDSSEGSAGSGPLWCSAESCLP----------STRRRPSLSQ 226
Query: 234 EQFSFVEYCPPSANSTPASTPELARRSSGLSRSRSQPCVLNDKKVGVKRRRPEEVQEQRP 293
E+ + P A+S+P STP L R GL R RSQPCVL+ K+ KRRR E+ + RP
Sbjct: 227 ERLAGAGTPLPWASSSPTSTPALGGR-RGLLRCRSQPCVLSGKRSRRKRRREEDARWTRP 285
Query: 294 SLDLAKMAQNCQTFSSLSCLSAGTED 319
SLD KM Q + SL L+ +D
Sbjct: 286 SLDFLKMTQTLKNSKSLCSLNYEDDD 311
>gi|208431810 hypothetical protein LOC51307 [Homo sapiens]
Length = 392
Score = 111 bits (277), Expect = 1e-24
Identities = 103/329 (31%), Positives = 136/329 (41%), Gaps = 56/329 (17%)
Query: 105 PSAPPSKRQCRSLSFSDEMSSCRTSWRPLGSKVWTPVEKRRCYSGGSVQ-------RYSN 157
P APPSKR CRSLS ++S + WRP SK+WTP++ R GG Q + +
Sbjct: 109 PPAPPSKRHCRSLSVPVDLSRWQPVWRPAPSKLWTPIKHRGSGGGGGPQVPHQSPPKRVS 168
Query: 158 GFSTMQRSSSFSLPSRANVLSSPCDQAGLHHRFGGQPCQGVPGSAPCGQAGDTWSPDLHP 217
+Q S+ S + A+ SP + + +PC P S ++ SP
Sbjct: 169 SLRFLQAPSASSQCAPAHRPYSPPFFSLALAQDSSRPCAASPQSGSWESDAESLSP---- 224
Query: 218 VGGGRLDLQRSLSCSHEQFSFVEYCPPSANSTPASTPELARRSSG---LSRSRSQPCVLN 274
QR S S PSA S+PAS+PEL R G L RSRSQPC L+
Sbjct: 225 -----CPPQRRFSLSPSLGPQASRFLPSARSSPASSPELPWRPRGLRNLPRSRSQPCDLD 279
Query: 275 DKKVGVKRRRPEEVQEQRPSLDLAKMAQNCQTFSSLSCLSAGTEDCGPQSPFARHVSNTR 334
+K GVKRR E+ + RPSLD KM N + +S CL + SP
Sbjct: 280 ARKTGVKRRHEEDPRRLRPSLDFDKM--NQKPYSGGLCLQETAREGSSISP--------- 328
Query: 335 AWTALLSASGPGGRTPAGTPVPEPLPPSFDDHLACQEDLSCEESDSCALDEDCGRRAEPA 394
W S P PL S + LS E + E A
Sbjct: 329 PWFMACS--------------PPPLSASCSPTGGSSQVLSESEEEE-----------EGA 363
Query: 395 AAWRDRGAPGNSLCSLD-GELDIEQIEKN 422
W + +LC D G+LD+ IE+N
Sbjct: 364 VRWGRQALSKRTLCQRDFGDLDLNLIEEN 392
>gi|7706139 hypothetical protein LOC51307 [Homo sapiens]
Length = 392
Score = 111 bits (277), Expect = 1e-24
Identities = 103/329 (31%), Positives = 136/329 (41%), Gaps = 56/329 (17%)
Query: 105 PSAPPSKRQCRSLSFSDEMSSCRTSWRPLGSKVWTPVEKRRCYSGGSVQ-------RYSN 157
P APPSKR CRSLS ++S + WRP SK+WTP++ R GG Q + +
Sbjct: 109 PPAPPSKRHCRSLSVPVDLSRWQPVWRPAPSKLWTPIKHRGSGGGGGPQVPHQSPPKRVS 168
Query: 158 GFSTMQRSSSFSLPSRANVLSSPCDQAGLHHRFGGQPCQGVPGSAPCGQAGDTWSPDLHP 217
+Q S+ S + A+ SP + + +PC P S ++ SP
Sbjct: 169 SLRFLQAPSASSQCAPAHRPYSPPFFSLALAQDSSRPCAASPQSGSWESDAESLSP---- 224
Query: 218 VGGGRLDLQRSLSCSHEQFSFVEYCPPSANSTPASTPELARRSSG---LSRSRSQPCVLN 274
QR S S PSA S+PAS+PEL R G L RSRSQPC L+
Sbjct: 225 -----CPPQRRFSLSPSLGPQASRFLPSARSSPASSPELPWRPRGLRNLPRSRSQPCDLD 279
Query: 275 DKKVGVKRRRPEEVQEQRPSLDLAKMAQNCQTFSSLSCLSAGTEDCGPQSPFARHVSNTR 334
+K GVKRR E+ + RPSLD KM N + +S CL + SP
Sbjct: 280 ARKTGVKRRHEEDPRRLRPSLDFDKM--NQKPYSGGLCLQETAREGSSISP--------- 328
Query: 335 AWTALLSASGPGGRTPAGTPVPEPLPPSFDDHLACQEDLSCEESDSCALDEDCGRRAEPA 394
W S P PL S + LS E + E A
Sbjct: 329 PWFMACS--------------PPPLSASCSPTGGSSQVLSESEEEE-----------EGA 363
Query: 395 AAWRDRGAPGNSLCSLD-GELDIEQIEKN 422
W + +LC D G+LD+ IE+N
Sbjct: 364 VRWGRQALSKRTLCQRDFGDLDLNLIEEN 392
>gi|239755499 PREDICTED: hypothetical protein [Homo sapiens]
Length = 516
Score = 35.4 bits (80), Expect = 0.098
Identities = 30/87 (34%), Positives = 36/87 (41%), Gaps = 10/87 (11%)
Query: 172 SRANVLSSPCDQAGLHHRFGGQPCQGVPGSAPCGQAGDTWSPDLHPVGG--GRLDLQRSL 229
S ++ S C Q G HH QPCQG S G L +GG RLDLQ
Sbjct: 437 SWGHMASEECQQQG-HHGPSQQPCQGASSSKWAGLG-------LEVLGGRRARLDLQVRG 488
Query: 230 SCSHEQFSFVEYCPPSANSTPASTPEL 256
S Q F P ++P S PE+
Sbjct: 489 SQVSAQPCFFPIKTPLTAASPGSVPEI 515
>gi|239750031 PREDICTED: hypothetical protein [Homo sapiens]
Length = 356
Score = 35.4 bits (80), Expect = 0.098
Identities = 30/87 (34%), Positives = 36/87 (41%), Gaps = 10/87 (11%)
Query: 172 SRANVLSSPCDQAGLHHRFGGQPCQGVPGSAPCGQAGDTWSPDLHPVGG--GRLDLQRSL 229
S ++ S C Q G HH QPCQG S G L +GG RLDLQ
Sbjct: 277 SWGHMASEECQQQG-HHGPSQQPCQGASSSKWAGLG-------LEVLGGRRARLDLQVRG 328
Query: 230 SCSHEQFSFVEYCPPSANSTPASTPEL 256
S Q F P ++P S PE+
Sbjct: 329 SQVSAQPCFFPIKTPLTAASPGSVPEI 355
>gi|239744342 PREDICTED: hypothetical protein XP_002343123 [Homo
sapiens]
Length = 356
Score = 35.4 bits (80), Expect = 0.098
Identities = 30/87 (34%), Positives = 36/87 (41%), Gaps = 10/87 (11%)
Query: 172 SRANVLSSPCDQAGLHHRFGGQPCQGVPGSAPCGQAGDTWSPDLHPVGG--GRLDLQRSL 229
S ++ S C Q G HH QPCQG S G L +GG RLDLQ
Sbjct: 277 SWGHMASEECQQQG-HHGPSQQPCQGASSSKWAGLG-------LEVLGGRRARLDLQVRG 328
Query: 230 SCSHEQFSFVEYCPPSANSTPASTPEL 256
S Q F P ++P S PE+
Sbjct: 329 SQVSAQPCFFPIKTPLTAASPGSVPEI 355
>gi|28559039 mediator complex subunit 1 [Homo sapiens]
Length = 1581
Score = 35.0 bits (79), Expect = 0.13
Identities = 50/199 (25%), Positives = 75/199 (37%), Gaps = 21/199 (10%)
Query: 80 HREAVTACAVTSLIKDLSISDHNGNPSAPPSKRQCRSLSFSDEMSSCRTSWRPLGSKVWT 139
H + ++ A TS S S+ + + S + S S + + S GS +
Sbjct: 1100 HSSSSSSSASTSGKMKSSKSEGSSSSKLSSSMYSSQGSSGSSQSKNSSQSGGKPGS---S 1156
Query: 140 PVEKRRCYSGGSVQRYSNGFSTMQRSSSFSLPSRANVLSSPCDQAGLHHRFGG------Q 193
P+ K SG S S + SS PS + SP H R G
Sbjct: 1157 PITKHGLSSGSS----STKMKPQGKPSSLMNPSLSKPNISPS-----HSRPPGGSDKLAS 1207
Query: 194 PCQGVPGSAPCGQAGD---TWSPDLHPVGGGRLDLQRSLSCSHEQFSFVEYCPPSANSTP 250
P + VPG+ P +A + S H G +S S S + PPS+NS
Sbjct: 1208 PMKPVPGTPPSSKAKSPISSGSGGSHMSGTSSSSGMKSSSGLGSSGSLSQKTPPSSNSCT 1267
Query: 251 ASTPELARRSSGLSRSRSQ 269
AS+ + S +S S++Q
Sbjct: 1268 ASSSSFSSSGSSMSSSQNQ 1286
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 34.7 bits (78), Expect = 0.17
Identities = 72/265 (27%), Positives = 101/265 (38%), Gaps = 46/265 (17%)
Query: 140 PVEKRRCYSGGSVQRYSNGFST--------MQRSSSFSLPSRANV-LSSPCDQAGLHHRF 190
P E+RR GSV RYS S+ ++ SS SLPS+ + SS +H F
Sbjct: 689 PPERRRACQDGSVPRYSGSSSSTRTQASGNLRPPSSGSLPSQDLLGTSSATVTPAVHSDF 748
Query: 191 GGQPCQGV-PGSAP-CGQAGDTWSPDLHPVGGGRLDLQRSLSCSHEQFSFVEYCPPSANS 248
GV P +AP G AGD S P + S SCS S A
Sbjct: 749 ----VSGVSPHNAPSAGWAGDAGSRTCSP---APIPPHTSDSCSK---SGAASLGEEARD 798
Query: 249 TP-ASTP---ELARRSSG-LSRSRSQPCVLNDKKVGVKRRRPEEVQEQRPSLDLAKM-AQ 302
TP S+P ++ R G + RS C +P + ++ PS + + + +
Sbjct: 799 TPQPSSPLVLQVGRPEQGAVGPHRSHCC-------SQPGTQPAQEAQRGPSPEASWLCGR 851
Query: 303 NCQT-FSSLSCLSAGTEDCGPQSPFARHVSNTRAWTALLSASGPGGRTPAGTPVPEPLPP 361
C T C + CG S + H S R GPGG GT P P P
Sbjct: 852 YCPTPPRGRPCPQRRSSSCG--STGSSHQSTAR---------GPGGSPQEGTRQPGPTPS 900
Query: 362 SFDDHLACQEDLSCEESDSCALDED 386
+ A + + + + S L E+
Sbjct: 901 PGPNSGASRRSSASQGAGSRGLSEE 925
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 34.7 bits (78), Expect = 0.17
Identities = 49/206 (23%), Positives = 83/206 (40%), Gaps = 19/206 (9%)
Query: 165 SSSFSLPSRANVLSSPCDQAGLHHRFGGQPCQGVPGSAPCGQAGDTWSPDLHPVGGGRLD 224
+ S SL S A +++ AG H+ P GVP S D P G +
Sbjct: 2470 AGSQSLSSGA--VATTTSSAGDHNGMLSVPAPGVPHS-------DVGEPPAS-TGAQQPS 2519
Query: 225 LQRSLSCSHEQFSFVEYCPPSANSTPASTPELARRSSGLSRSRSQPCVLNDKKVGVKRRR 284
+L + E+ S S++S+ +S+ + SSG S S S+ L + +R
Sbjct: 2520 ALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRV 2579
Query: 285 P-------EEVQEQRPS--LDLAKMAQNCQTFSSLSCLSAGTEDCGPQSPFARHVSNTRA 335
P E V+E RP + ++ + SS S S+ + S + S++ +
Sbjct: 2580 PSPTPAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2639
Query: 336 WTALLSASGPGGRTPAGTPVPEPLPP 361
++ S+S P P +P+P P
Sbjct: 2640 SSSSSSSSSPSPAKPGPQALPKPASP 2665
>gi|11037055 sperm associated antigen 4 [Homo sapiens]
Length = 437
Score = 34.3 bits (77), Expect = 0.22
Identities = 26/89 (29%), Positives = 33/89 (37%), Gaps = 8/89 (8%)
Query: 289 QEQRPSLDLAKMAQNCQTFSSLSCLSAGTEDC--------GPQSPFARHVSNTRAWTALL 340
+ RP + FS S +S +ED GP P R L
Sbjct: 3 RSSRPGSASSSRKHTPNFFSENSSMSITSEDSKGLRSAEPGPGEPEGRRARGPSCGEPAL 62
Query: 341 SASGPGGRTPAGTPVPEPLPPSFDDHLAC 369
SA PGG T AG+ +P P S + AC
Sbjct: 63 SAGVPGGTTWAGSSQQKPAPRSHNWQTAC 91
>gi|223005950 SH3KBP1 binding protein 1 [Homo sapiens]
Length = 707
Score = 33.5 bits (75), Expect = 0.37
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 42 GIMENDRWRDLDRKCPLQIDQPSTSIWECLPEKDSSLWHREAVTACAVTSLIKDLSISDH 101
G+ E + L+ C L PS W CLP ++ ++ S + S+S H
Sbjct: 592 GLTEQELMEQLEH-CELAPPAPSAPSWGCLPSPSPR------ISLTSLHSASSNTSLSGH 644
Query: 102 NGNPSAPPSKRQCR 115
G+PS P ++ + R
Sbjct: 645 RGSPSPPQAEARRR 658
>gi|122937283 6720455I24Rik homolog [Homo sapiens]
Length = 1413
Score = 33.1 bits (74), Expect = 0.49
Identities = 34/97 (35%), Positives = 41/97 (42%), Gaps = 16/97 (16%)
Query: 146 CYSGGSVQRYSNGFSTMQRSSSFSLPSRANVLSSPCDQAGLHHRFGGQPCQGVPGSAPCG 205
C +GG+ N F Q + F P+ SPCD H GGQ CQ GSA C
Sbjct: 320 CQNGGTCTHGINSFRC-QCPAGFGGPT-CETAQSPCDTKECQH--GGQ-CQVENGSAVCV 374
Query: 206 -QAG----------DTWSPDLHPVGGGRLDLQRSLSC 231
QAG D SPD GG +DL + +C
Sbjct: 375 CQAGYTGAACEMDVDDCSPDPCLNGGSCVDLVGNYTC 411
>gi|40548372 tetratricopeptide repeat domain 15 [Homo sapiens]
Length = 735
Score = 32.7 bits (73), Expect = 0.64
Identities = 55/237 (23%), Positives = 82/237 (34%), Gaps = 33/237 (13%)
Query: 196 QGVPGSAPCGQA-------GDTWSPDLHPVGGG--RLDLQRSLSCSHEQFSFVEYCPPSA 246
+G PG P G GD D P GG R D R + S + + E PP A
Sbjct: 97 EGDPGPEPAGTPSPSGEADGDCAPEDAAPSSGGAPRQDAAREVPGS--EAARPEQEPPVA 154
Query: 247 NSTPASTPELARRSSGLSRSRSQPCVLNDKKVG----VKRRRPEEVQEQRPSLDL----- 297
P T ++R+ S +P ++ G R P +V + PSL
Sbjct: 155 EPVPVCTI-FSQRAPPASGDGFEPQMVKSPSFGGASEASARTPPQVVQPSPSLSTFFGDT 213
Query: 298 -------AKMAQNCQTFSSLSCLSAGTEDCGPQSPFARHVSNTRAWTALLSASGPGGRTP 350
+ + T + +S + G P SP V T ++ GP P
Sbjct: 214 AASHSLASDFFDSFTTSAFISVSNPGAGSPAPASPPPLAVPGTEGRPEPVAMRGPQAAAP 273
Query: 351 AGTPVP----EPLPPSFDDHLACQEDLS-CEESDSCALDEDCGRRAEPAAAWRDRGA 402
+P P + + DD A +S + + L + R A A + RGA
Sbjct: 274 PASPEPFAHIQAVFAGSDDPFATALSMSEMDRRNDAWLPGEATRGVLRAVATQQRGA 330
>gi|148613886 regulatory factor X domain containing 2 [Homo sapiens]
Length = 1460
Score = 32.3 bits (72), Expect = 0.83
Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
Query: 286 EEVQEQRPSLDLAKMAQNCQTFSSLSCLSAGTEDCGPQSPFARHVSNTRAWTALLSASGP 345
+ + E+ ++ N ++ + ++ ++ P +P + H S+T + + S P
Sbjct: 885 DSIVEELVLMEQQMSMNNSHSYGNCLGMTLQSQSVTPGAPMSSHTSSTHFYHPIHSNGTP 944
Query: 346 ---GGRTPAGTPVPEPLPPSFDDHLACQEDLSCE 376
TP TP P P P + +A + LS E
Sbjct: 945 IHTPTPTPTPTPTPTPTPTPTSEMIAGSQSLSRE 978
>gi|148612816 RecQ protein-like 5 isoform 1 [Homo sapiens]
Length = 991
Score = 32.3 bits (72), Expect = 0.83
Identities = 61/258 (23%), Positives = 95/258 (36%), Gaps = 34/258 (13%)
Query: 82 EAVTACAVTSLIKDLSISDHNGNPSAPPSKRQCRSLSF--SDEMSSCRTSWRPLGSKVW- 138
+ T T+ I++ + G PPS R C L S+ + R P GS +
Sbjct: 667 QTATELMETTRIREQAPQPERGGEHEPPS-RPCGLLDEDGSEPLPGPRGEV-PGGSAHYG 724
Query: 139 --TPVEKRRCYSGGSVQRYSNGFSTMQRSSSFSLPSRANV-------LSSPCDQAGLHHR 189
+P +K + SGGS Q ++ + ++ + SP A
Sbjct: 725 GPSPEKKAKSSSGGSSLAKGRASKKQQLLATAAHKDSQSIARFFCRRVESPALLASAPEA 784
Query: 190 FGGQP-CQGVPGSAPCGQAGDTWSPDLHPVGGGRLDLQRSLSCSHEQFSFVEYCPPSANS 248
G P C+GV G A + ++ + GG ++ C E+ S CPP
Sbjct: 785 EGACPSCEGVQGPP---MAPEKYTGEEDGAGGHSPAPPQTEECLRERPST---CPPRDQG 838
Query: 249 TPASTPELARRSSGLSRSRSQPCVLNDKKVGVKRRRPEEVQEQRPSLDLAKMAQNCQTFS 308
TP P A+ + R RSQ + PE ++RP AK + +
Sbjct: 839 TPEVQPTPAKDTWKGKRPRSQ------------QENPESQPQKRPR-PSAKPSVVAEVKG 885
Query: 309 SLSCLSAGTEDCGPQSPF 326
S+S GT + Q PF
Sbjct: 886 SVSASEQGTLNPTAQDPF 903
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 32.3 bits (72), Expect = 0.83
Identities = 40/172 (23%), Positives = 65/172 (37%), Gaps = 14/172 (8%)
Query: 197 GVPGSAPCGQAGDTWSPDLHPVGGGRLDL----QRSLSCSHEQFSFVEYCPPSANSTPAS 252
G+ G P AG + P G+ + Q+ + Q + PP A P+
Sbjct: 503 GIQGRTPGAMAGMQYPQQQMPPQYGQQGVSGYCQQGQQPYYSQQPQPPHLPPQAQYLPSQ 562
Query: 253 TPELARRSSGLSR----SRSQPCVLNDKKVG-----VKRRRPEEVQEQRPSLDLAKMAQN 303
+ + + +S+ +RSQP + K +++ RP + + S+D
Sbjct: 563 SQQRYQPQQDMSQEGYGTRSQPPLAPGKPNHEDLNLIQQERPSSLPDLSGSIDDLPTGTE 622
Query: 304 CQTFSSLSCLSAGTEDCGPQSPFARHVSNTRAWTALLSASGPGGRTPAGTPV 355
T SS S T G QS A+ + A L S G +P G+PV
Sbjct: 623 A-TLSSAVSASGSTSSQGDQSNPAQSPFSPHASPHLSSIPGGPSPSPVGSPV 673
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 32.3 bits (72), Expect = 0.83
Identities = 40/172 (23%), Positives = 65/172 (37%), Gaps = 14/172 (8%)
Query: 197 GVPGSAPCGQAGDTWSPDLHPVGGGRLDL----QRSLSCSHEQFSFVEYCPPSANSTPAS 252
G+ G P AG + P G+ + Q+ + Q + PP A P+
Sbjct: 503 GIQGRTPGAMAGMQYPQQQMPPQYGQQGVSGYCQQGQQPYYSQQPQPPHLPPQAQYLPSQ 562
Query: 253 TPELARRSSGLSR----SRSQPCVLNDKKVG-----VKRRRPEEVQEQRPSLDLAKMAQN 303
+ + + +S+ +RSQP + K +++ RP + + S+D
Sbjct: 563 SQQRYQPQQDMSQEGYGTRSQPPLAPGKPNHEDLNLIQQERPSSLPDLSGSIDDLPTGTE 622
Query: 304 CQTFSSLSCLSAGTEDCGPQSPFARHVSNTRAWTALLSASGPGGRTPAGTPV 355
T SS S T G QS A+ + A L S G +P G+PV
Sbjct: 623 A-TLSSAVSASGSTSSQGDQSNPAQSPFSPHASPHLSSIPGGPSPSPVGSPV 673
>gi|119220585 apical early endosomal glycoprotein precursor [Homo
sapiens]
Length = 1137
Score = 32.0 bits (71), Expect = 1.1
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 22/73 (30%)
Query: 345 PGGRTPAGTPVPEPLPPSF-------DDHLACQE-----DLSCEESDSCALDED---CGR 389
PG R PA P+PLPPS HLAC + + C+ + CA ED CG
Sbjct: 437 PGPRAPA----PQPLPPSSRLQDSCKQGHLACGDLCVPPEQLCDFEEQCAGGEDEQACGT 492
Query: 390 ---RAEPAAAWRD 399
+ A W D
Sbjct: 493 TDFESPEAGGWED 505
>gi|226423889 myocardin isoform 1 [Homo sapiens]
Length = 986
Score = 31.6 bits (70), Expect = 1.4
Identities = 72/332 (21%), Positives = 118/332 (35%), Gaps = 55/332 (16%)
Query: 73 EKDSSLWHREAVTACAVTSLIKDLSISDHNGNPSAPPSKRQCRSLSFSDEMSSCRTSWRP 132
+K + R+A C L+ + S P ++ + + +D+++ + + RP
Sbjct: 58 DKAKNSLKRKARNRCNSADLVNMHILQASTAERSIPTAQMKLKRARLADDLNE-KIALRP 116
Query: 133 LGSKVWTPVEKRRCYSGGSVQRYSNGFSTMQRSSSFSLPSRANVLSSPCDQAGLH-HRFG 191
++ VEK +V+ G SFS + A GL +
Sbjct: 117 GPLEL---VEKNILPVDSAVKEAIKG-----NQVSFSKSTDAFAFEEDSSSDGLSPDQTR 168
Query: 192 GQPCQGVPGSAPCGQAGDTWSPDLHPVGGGRLDLQRSLSCSHEQFSFVEYCPPSANST-- 249
+ Q GS P +A DT S G L + L+ E PS S
Sbjct: 169 SEDPQNSAGSPPDAKASDTPST-------GSLGTNQDLASGSENDRNDSASQPSHQSDAG 221
Query: 250 -----PASTP---ELARRSSGLSRSRSQPCVLNDKKVGVKRRR-------PEEVQEQRPS 294
P STP A +S L S+++ D K VK+ + ++ ++ P
Sbjct: 222 KQGLGPPSTPIAVHAAVKSKSLGDSKNRHKKPKDPKPKVKKLKYHQYIPPDQKAEKSPPP 281
Query: 295 LD--LAKMAQNCQTFSSLSCLSA------------GTEDCGPQSPFARHVSNTRAWTALL 340
+D A++ Q Q F L LS G + P + V N + + L
Sbjct: 282 MDSAYARLLQQQQLFLQLQILSQQQQQQQHRFSYLGMHQAQLKEPNEQMVRNPNSSSTPL 341
Query: 341 S-------ASGPGGRTPAGTPVPEPLPPSFDD 365
S + G+T + P PLPP+ DD
Sbjct: 342 SNTPLSPVKNSFSGQTGVSSFKPGPLPPNLDD 373
>gi|23957692 myocardin isoform 2 [Homo sapiens]
Length = 938
Score = 31.6 bits (70), Expect = 1.4
Identities = 72/332 (21%), Positives = 118/332 (35%), Gaps = 55/332 (16%)
Query: 73 EKDSSLWHREAVTACAVTSLIKDLSISDHNGNPSAPPSKRQCRSLSFSDEMSSCRTSWRP 132
+K + R+A C L+ + S P ++ + + +D+++ + + RP
Sbjct: 58 DKAKNSLKRKARNRCNSADLVNMHILQASTAERSIPTAQMKLKRARLADDLNE-KIALRP 116
Query: 133 LGSKVWTPVEKRRCYSGGSVQRYSNGFSTMQRSSSFSLPSRANVLSSPCDQAGLH-HRFG 191
++ VEK +V+ G SFS + A GL +
Sbjct: 117 GPLEL---VEKNILPVDSAVKEAIKG-----NQVSFSKSTDAFAFEEDSSSDGLSPDQTR 168
Query: 192 GQPCQGVPGSAPCGQAGDTWSPDLHPVGGGRLDLQRSLSCSHEQFSFVEYCPPSANST-- 249
+ Q GS P +A DT S G L + L+ E PS S
Sbjct: 169 SEDPQNSAGSPPDAKASDTPST-------GSLGTNQDLASGSENDRNDSASQPSHQSDAG 221
Query: 250 -----PASTP---ELARRSSGLSRSRSQPCVLNDKKVGVKRRR-------PEEVQEQRPS 294
P STP A +S L S+++ D K VK+ + ++ ++ P
Sbjct: 222 KQGLGPPSTPIAVHAAVKSKSLGDSKNRHKKPKDPKPKVKKLKYHQYIPPDQKAEKSPPP 281
Query: 295 LD--LAKMAQNCQTFSSLSCLSA------------GTEDCGPQSPFARHVSNTRAWTALL 340
+D A++ Q Q F L LS G + P + V N + + L
Sbjct: 282 MDSAYARLLQQQQLFLQLQILSQQQQQQQHRFSYLGMHQAQLKEPNEQMVRNPNSSSTPL 341
Query: 341 S-------ASGPGGRTPAGTPVPEPLPPSFDD 365
S + G+T + P PLPP+ DD
Sbjct: 342 SNTPLSPVKNSFSGQTGVSSFKPGPLPPNLDD 373
>gi|33286444 mastermind-like 2 [Homo sapiens]
Length = 1156
Score = 31.6 bits (70), Expect = 1.4
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 20/116 (17%)
Query: 217 PVGGGRLDLQRSLSCSHEQFSFV-EYCPPSANSTPASTPELARRSSGLSRSRSQPCVLND 275
P+ G + Q S +Q S V + PS + P S P ++G SQ +LN
Sbjct: 699 PIAG--MGYQVSQQQRQDQHSVVGQNTGPSPSPNPCSNP-----NTGSGYMNSQQSLLNQ 751
Query: 276 KKVGVKRRRPEEVQEQRPSLDLAKMAQNCQTFSSLSCLSAGTEDCGPQSPFARHVS 331
+ +G K+ ++ EQ+ L L + + A E PQ RH+S
Sbjct: 752 QLMGKKQTLQRQIMEQKQQLLLQQQ------------MLADAEKIAPQDQINRHLS 795
>gi|153792042 G protein-coupled receptor 178 [Homo sapiens]
Length = 612
Score = 31.6 bits (70), Expect = 1.4
Identities = 25/73 (34%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Query: 321 GPQSPFARHVSNTRAWTALLSASGPGGRTPAGTPVPEPLPPSFDDHLACQEDLSCEESDS 380
GP +P S++RA LSA GP P T P P PP Q D C E
Sbjct: 18 GPPAPTRAVSSSSRARGGALSALGPSPARPL-TTSPAPAPPPRSRPARQQPDPQCWEKRG 76
Query: 381 CALDEDCGRRAEP 393
A + G A P
Sbjct: 77 GAGGDTKGGAAGP 89
>gi|4507483 thrombomodulin precursor [Homo sapiens]
Length = 575
Score = 31.2 bits (69), Expect = 1.9
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 320 CGPQSPFARHVSNTRAWTALLSASGPGGRTPAGTPVPEPLPPS 362
CGP S ARH+ T S GG + +G P P P P S
Sbjct: 466 CGPDSALARHIG-----TDCDSGKVDGGDSGSGEPPPSPTPGS 503
>gi|239757046 PREDICTED: similar to hCG1790759 [Homo sapiens]
Length = 737
Score = 31.2 bits (69), Expect = 1.9
Identities = 36/137 (26%), Positives = 53/137 (38%), Gaps = 24/137 (17%)
Query: 243 PPSANSTPASTPELARRSSGLSRSRSQPCVLNDKKVGVKRRRPEEVQE---QRPSLDLAK 299
P + PAS +L R + S P + N R +P + E Q P L A+
Sbjct: 40 PALPSKAPASQDDLPRCFYLAALDSSTPPMKN-------RAKPPDFSEPLSQLPDLTAAR 92
Query: 300 MAQNCQTFSS---LSCLSAGTEDCGPQ-----SPFARHVSNTRAWTALLSASGPGGR--- 348
+ ++C + +S + L + E P S F + TA A GPGGR
Sbjct: 93 IFESCMSDTSGKDCTLLRSHREVLDPSLSSSFSNFQEKTARRFKGTAPAEARGPGGRRFS 152
Query: 349 ---TPAGTPVPEPLPPS 362
TP+ P PP+
Sbjct: 153 GLLTPSAARPDPPAPPA 169
>gi|226423891 myocardin isoform 3 [Homo sapiens]
Length = 684
Score = 31.2 bits (69), Expect = 1.9
Identities = 51/208 (24%), Positives = 75/208 (36%), Gaps = 45/208 (21%)
Query: 196 QGVPGSAPCGQAGDTWSPDLHPVGGGRLDLQRSLSCSHEQFSFVEYCPPSANST------ 249
Q GS P +A DT S G L + L+ E PS S
Sbjct: 77 QNSAGSPPDAKASDTPST-------GSLGTNQDLASGSENDRNDSASQPSHQSDAGKQGL 129
Query: 250 -PASTP---ELARRSSGLSRSRSQPCVLNDKKVGVKRRR-------PEEVQEQRPSLD-- 296
P STP A +S L S+++ D K VK+ + ++ ++ P +D
Sbjct: 130 GPPSTPIAVHAAVKSKSLGDSKNRHKKPKDPKPKVKKLKYHQYIPPDQKAEKSPPPMDSA 189
Query: 297 LAKMAQNCQTFSSLSCLSA------------GTEDCGPQSPFARHVSNTRAWTALLS--- 341
A++ Q Q F L LS G + P + V N + + LS
Sbjct: 190 YARLLQQQQLFLQLQILSQQQQQQQHRFSYLGMHQAQLKEPNEQMVRNPNSSSTPLSNTP 249
Query: 342 ----ASGPGGRTPAGTPVPEPLPPSFDD 365
+ G+T + P PLPP+ DD
Sbjct: 250 LSPVKNSFSGQTGVSSFKPGPLPPNLDD 277
>gi|122937247 unc-13 homolog A [Homo sapiens]
Length = 1791
Score = 31.2 bits (69), Expect = 1.9
Identities = 68/297 (22%), Positives = 101/297 (34%), Gaps = 62/297 (20%)
Query: 150 GSVQRYSNGFSTMQRSSSFSLPSRANVLSSPCDQAGLHHRFGGQPCQGVPGSAPCGQAGD 209
GS + YS+ +M FS P + S + G+ QG Q +
Sbjct: 322 GSRESYSD---SMHSYEEFSEPQALSPTGSS------RYASSGELSQG------SSQLSE 366
Query: 210 TWSPDLHPVGGGRLDLQRSLSCSHEQFSFVEYCPPSANSTPASTPELARRSSGLSRSRSQ 269
+ PD H + G ++ +R H S V Y S P + L
Sbjct: 367 DFDPDEHSLQGSDMEDERDRDSYHSCHSSVSYHKDS--------PRWDQDEEELEEDLED 418
Query: 270 PCVLNDKKVGVKRRRPEEVQEQRPSLDLAKMAQ-------NCQTFSSLSCLSA--GTEDC 320
L ++++ EE +E+ P DL AQ + F +S A G ED
Sbjct: 419 --FLEEEELPEDEEELEEEEEEVPD-DLGSYAQREDVAVAEPKDFKRISLPPAAPGKEDK 475
Query: 321 GPQSPFARHVSNTRAWTALLSASGPG--GRTPAGTPVPEPLPPSFDDHLACQEDLSCEE- 377
P +P T A A P + PA +PE PP ++ +ED +E
Sbjct: 476 APVAP-------TEAPDMAKVAPKPATPDKVPAAEQIPEAEPPKDEESFRPREDEEGQEG 528
Query: 378 SDSCA----------------LDEDCGRRAEPAAAWRDRGAPGNSLCSLDGELDIEQ 418
DS + L E G + W +G PG L +D DI +
Sbjct: 529 QDSMSRAKANWLRAFNKVRMQLQEARGEGEMSKSLW-FKGGPGGGLIIIDSMPDIRK 584
>gi|134031945 SCO-spondin [Homo sapiens]
Length = 5147
Score = 31.2 bits (69), Expect = 1.9
Identities = 27/74 (36%), Positives = 30/74 (40%), Gaps = 10/74 (13%)
Query: 190 FGGQPCQGVPGSA------PC-GQAGD--TWSPDLHPVGGGRLDLQRSLSCSHEQFSFVE 240
FGG CQG A PC G G+ WSP P GGG + R S S +FS
Sbjct: 3019 FGGAECQGPTMEAEFCSLRPCPGPGGEWGPWSPCSVPCGGGYRNRTRGSSRSLMEFSTCG 3078
Query: 241 YCPPSANSTPASTP 254
P A P P
Sbjct: 3079 -LQPCAGPVPGMCP 3091
>gi|45120119 microtubule associated serine/threonine kinase 1 [Homo
sapiens]
Length = 1570
Score = 30.8 bits (68), Expect = 2.4
Identities = 31/93 (33%), Positives = 41/93 (44%), Gaps = 16/93 (17%)
Query: 334 RAWT-ALLSASGPGGRTPAGTPVPE----------PLPPSFDDHLACQEDLSCEESDSCA 382
R W+ A L +SG G TP+ T P P+ D+ + ES +
Sbjct: 87 RRWSLASLPSSGYGTNTPSSTVSSSCSSQERLHQLPYQPTVDELHFLSKHFGSTESIT-- 144
Query: 383 LDEDCGRRAEPAAAWRDRG-APGNSLCSLDGEL 414
DED GRR+ PA R R +PG S S D E+
Sbjct: 145 -DEDGGRRS-PAVRPRSRSLSPGRSPSSYDNEI 175
>gi|169201482 PREDICTED: similar to hCG2038970 [Homo sapiens]
Length = 821
Score = 30.8 bits (68), Expect = 2.4
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 256 LARRSSGLSRSRSQPCVLNDKKVGVKRRRPEEVQEQRPSLDLAKMAQN 303
L+ +S+ LSR + V+ K+ G K RPE+V+ +R S + ++ +N
Sbjct: 648 LSFKSAPLSRKHLRGPVVLAKEAGRKEGRPEDVENRRTSFTVGELFRN 695
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.129 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,578,290
Number of Sequences: 37866
Number of extensions: 1117534
Number of successful extensions: 4402
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 4329
Number of HSP's gapped (non-prelim): 152
length of query: 422
length of database: 18,247,518
effective HSP length: 105
effective length of query: 317
effective length of database: 14,271,588
effective search space: 4524093396
effective search space used: 4524093396
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.