Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CASP10 Sequence: fasta or formatted (521aa) NCBI GI: 47078269
Description:

caspase 10 isoform b preproprotein

Referenced in:

BCL2 Pathways, Caspases, and Programmed Cell Death

Other entries for this name:
alt prot [479aa] caspase 10 isoform a preproprotein
alt prot [522aa] caspase 10 isoform d preproprotein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         32           2
 C cysteine            2.3         12           1
 D aspartate           4.2         22           1
 E glutamate           8.3         43           3
 F phenylalanine       4.2         22           2
 G glycine             4.4         23           1
 H histidine           2.9         15           1
 I isoleucine          5.0         26           2
 K lysine              7.3         38           2
 L leucine            11.7         61           2
 M methionine          2.1         11           1
 N asparagine          4.6         24           2
 P proline             4.4         23           2
 Q glutamine           5.0         26           1
 R arginine            5.0         26           2
 S serine              8.6         45           3
 T threonine           5.0         26           1
 V valine              6.0         31           2
 W tryptophan          1.2          6           1
 Y tyrosine            1.7          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   caspase 10 isoform b preproprotein 
CASP10                0.906   caspase 10 isoform d preproprotein 
CASP10                0.800   caspase 10 isoform a preproprotein 
CASP8                 0.211   caspase 8 isoform G precursor 
CASP8                 0.209   caspase 8 isoform B precursor 
CASP8                 0.205   caspase 8 isoform C precursor 
CASP8                 0.205   caspase 8 isoform C precursor 
CASP8                 0.189   caspase 8 isoform A precursor 
CASP7                 0.123   caspase 7 isoform delta 
CASP7                 0.123   caspase 7 isoform alpha 
CASP7                 0.123   caspase 7 isoform alpha precursor 
CASP3                 0.094   caspase 3 preproprotein 
CASP3                 0.094   caspase 3 preproprotein 
CASP2                 0.088   caspase 2 isoform 1 preproprotein 
CASP6                 0.088   caspase 6 isoform alpha preproprotein 
CASP9                 0.082   caspase 9 isoform alpha preproprotein 
CFLAR                 0.082   CASP8 and FADD-like apoptosis regulator isoform 1 [...
CFLAR                 0.082   CASP8 and FADD-like apoptosis regulator isoform 1 [...
CASP8                 0.062   caspase 8 isoform E 
CASP6                 0.062   caspase 6 isoform beta 
CASP14                0.060   caspase 14 precursor 
CASP1                 0.051   caspase 1 isoform gamma precursor 
CASP1                 0.051   caspase 1 isoform alpha precursor 
CASP1                 0.051   caspase 1 isoform beta precursor 
CASP5                 0.051   caspase 5 isoform f precursor 
CASP5                 0.051   caspase 5 isoform c 
CASP5                 0.051   caspase 5 isoform b precursor 
CASP5                 0.051   caspase 5 isoform a precursor 
CASP7                 0.039   caspase 7 isoform beta 
CASP4                 0.038   caspase 4 isoform alpha precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press