Guide to the Human Genome
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Name: CASP7 Sequence: fasta or formatted (303aa) NCBI GI: 15718700
Description:

caspase 7 isoform alpha

Referenced in:

BCL2 Pathways, Caspases, and Programmed Cell Death

Other entries for this name:
alt prot [336aa] caspase 7 isoform delta
alt prot [253aa] caspase 7 isoform beta
alt mRNA [303aa] caspase 7 isoform alpha precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         18           2
 C cysteine            3.6         11           1
 D aspartate           8.9         27           2
 E glutamate           6.3         19           2
 F phenylalanine       5.6         17           2
 G glycine             5.9         18           1
 H histidine           2.3          7           1
 I isoleucine          5.6         17           3
 K lysine              8.3         25           4
 L leucine             6.6         20           2
 M methionine          2.3          7           1
 N asparagine          4.6         14           2
 P proline             4.0         12           1
 Q glutamine           3.6         11           1
 R arginine            5.0         15           1
 S serine              6.9         21           2
 T threonine           5.0         15           2
 V valine              5.9         18           2
 W tryptophan          0.7          2           1
 Y tyrosine            3.0          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   caspase 7 isoform alpha 
CASP7                 1.000   caspase 7 isoform delta 
CASP7                 1.000   caspase 7 isoform alpha precursor 
CASP7                 0.467   caspase 7 isoform beta 
CASP3                 0.427   caspase 3 preproprotein 
CASP3                 0.427   caspase 3 preproprotein 
CASP6                 0.264   caspase 6 isoform alpha preproprotein 
CASP10                0.238   caspase 10 isoform d preproprotein 
CASP10                0.236   caspase 10 isoform a preproprotein 
CASP8                 0.226   caspase 8 isoform G precursor 
CASP8                 0.226   caspase 8 isoform C precursor 
CASP8                 0.226   caspase 8 isoform C precursor 
CASP8                 0.226   caspase 8 isoform B precursor 
CASP8                 0.226   caspase 8 isoform A precursor 
CASP6                 0.214   caspase 6 isoform beta 
CASP10                0.208   caspase 10 isoform b preproprotein 
CASP9                 0.181   caspase 9 isoform alpha preproprotein 
CASP2                 0.166   caspase 2 isoform 1 preproprotein 
CASP14                0.125   caspase 14 precursor 
CASP5                 0.083   caspase 5 isoform f precursor 
CASP5                 0.083   caspase 5 isoform c 
CASP5                 0.083   caspase 5 isoform b precursor 
CASP5                 0.083   caspase 5 isoform a precursor 
CASP1                 0.073   caspase 1 isoform gamma precursor 
CASP1                 0.073   caspase 1 isoform alpha precursor 
CASP1                 0.073   caspase 1 isoform beta precursor 
CASP4                 0.070   caspase 4 isoform gamma precursor 
CASP4                 0.070   caspase 4 isoform alpha precursor 
LOC197350             0.066   PREDICTED: hypothetical protein LOC197350 
LOC197350             0.066   PREDICTED: hypothetical protein LOC197350 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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