Guide to the Human Genome
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Name: CASP6 Sequence: fasta or formatted (204aa) NCBI GI: 14916485
Description:

caspase 6 isoform beta

Referenced in:

BCL2 Pathways, Caspases, and Programmed Cell Death

Other entries for this name:
alt prot [293aa] caspase 6 isoform alpha preproprotein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         14           2
 C cysteine            3.9          8           1
 D aspartate           6.4         13           1
 E glutamate           4.4          9           1
 F phenylalanine       4.9         10           2
 G glycine             6.9         14           1
 H histidine           3.9          8           1
 I isoleucine          4.9         10           2
 K lysine              6.9         14           2
 L leucine             8.3         17           2
 M methionine          2.0          4           1
 N asparagine          3.4          7           1
 P proline             3.9          8           1
 Q glutamine           3.4          7           1
 R arginine            3.4          7           2
 S serine              8.3         17           2
 T threonine           5.4         11           1
 V valine              8.3         17           2
 W tryptophan          0.5          1           1
 Y tyrosine            3.9          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   caspase 6 isoform beta 
CASP6                 0.937   caspase 6 isoform alpha preproprotein 
CASP3                 0.346   caspase 3 preproprotein 
CASP3                 0.346   caspase 3 preproprotein 
CASP7                 0.326   caspase 7 isoform delta 
CASP7                 0.326   caspase 7 isoform alpha 
CASP7                 0.326   caspase 7 isoform alpha precursor 
CASP8                 0.194   caspase 8 isoform G precursor 
CASP8                 0.194   caspase 8 isoform C precursor 
CASP8                 0.194   caspase 8 isoform C precursor 
CASP8                 0.194   caspase 8 isoform B precursor 
CASP8                 0.194   caspase 8 isoform A precursor 
CASP10                0.187   caspase 10 isoform d preproprotein 
CASP10                0.187   caspase 10 isoform a preproprotein 
CASP10                0.159   caspase 10 isoform b preproprotein 
CASP9                 0.149   caspase 9 isoform alpha preproprotein 
CASP2                 0.146   caspase 2 isoform 1 preproprotein 
CASP14                0.119   caspase 14 precursor 
LOC197350             0.101   PREDICTED: hypothetical protein LOC197350 
LOC197350             0.101   PREDICTED: hypothetical protein LOC197350 
CASP5                 0.073   caspase 5 isoform f precursor 
CASP5                 0.073   caspase 5 isoform d 
CASP5                 0.073   caspase 5 isoform c 
CASP5                 0.073   caspase 5 isoform b precursor 
CASP5                 0.073   caspase 5 isoform a precursor 
CASP4                 0.066   caspase 4 isoform gamma precursor 
CASP4                 0.066   caspase 4 isoform alpha precursor 
CFLAR                 0.063   CASP8 and FADD-like apoptosis regulator isoform 1 [...
CFLAR                 0.063   CASP8 and FADD-like apoptosis regulator isoform 1 [...
CASP1                 0.061   caspase 1 isoform gamma precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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