Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CASP2 Sequence: fasta or formatted (452aa) NCBI GI: 39995059
Description:

caspase 2 isoform 1 preproprotein

Referenced in:

BCL2 Pathways, Caspases, and Programmed Cell Death
Leucine-rich Repeat Family

Other entries for this name:
alt prot [108aa] caspase 2 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         30           2
 C cysteine            4.0         18           1
 D aspartate           5.5         25           1
 E glutamate           6.9         31           2
 F phenylalanine       4.0         18           2
 G glycine             6.6         30           2
 H histidine           4.2         19           2
 I isoleucine          2.2         10           2
 K lysine              6.0         27           2
 L leucine            13.5         61           3
 M methionine          2.9         13           1
 N asparagine          2.7         12           1
 P proline             5.1         23           2
 Q glutamine           5.5         25           2
 R arginine            5.1         23           2
 S serine              5.8         26           1
 T threonine           4.9         22           2
 V valine              5.8         26           2
 W tryptophan          0.4          2           1
 Y tyrosine            2.4         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   caspase 2 isoform 1 preproprotein 
CASP2                 0.207   caspase 2 isoform 3 
CASP9                 0.136   caspase 9 isoform alpha preproprotein 
CASP7                 0.111   caspase 7 isoform delta 
CASP7                 0.111   caspase 7 isoform alpha 
CASP7                 0.111   caspase 7 isoform alpha precursor 
CASP3                 0.110   caspase 3 preproprotein 
CASP3                 0.110   caspase 3 preproprotein 
CASP10                0.104   caspase 10 isoform a preproprotein 
CASP8                 0.104   caspase 8 isoform G precursor 
CASP8                 0.104   caspase 8 isoform C precursor 
CASP8                 0.104   caspase 8 isoform C precursor 
CASP8                 0.104   caspase 8 isoform B precursor 
CASP8                 0.104   caspase 8 isoform A precursor 
CASP10                0.100   caspase 10 isoform d preproprotein 
CASP10                0.100   caspase 10 isoform b preproprotein 
CASP1                 0.094   caspase 1 isoform gamma precursor 
CASP1                 0.094   caspase 1 isoform alpha precursor 
CASP1                 0.094   caspase 1 isoform beta precursor 
CASP6                 0.094   caspase 6 isoform alpha preproprotein 
CASP14                0.091   caspase 14 precursor 
CASP5                 0.081   caspase 5 isoform f precursor 
CASP5                 0.081   caspase 5 isoform c 
CASP5                 0.081   caspase 5 isoform b precursor 
CASP5                 0.081   caspase 5 isoform a precursor 
CASP1                 0.079   caspase 1 isoform delta 
CASP4                 0.077   caspase 4 isoform gamma precursor 
CASP4                 0.077   caspase 4 isoform alpha precursor 
CASP5                 0.071   caspase 5 isoform d 
CASP6                 0.064   caspase 6 isoform beta 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press