Search of human proteins with 47078258

Search of human proteins with 47078258

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|47078258 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase
4 [Homo sapiens]
         (344 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|47078258 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 4...   713   0.0  
gi|9994175 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 4 ...   713   0.0  
gi|4502349 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 3 ...   303   1e-82
gi|53759113 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 2...   282   4e-76
gi|4502347 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 2 ...   282   4e-76
gi|13929462 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 1...   280   1e-75
gi|190570165 beta-1,4-galactosyltransferase 6 [Homo sapiens]          206   2e-53
gi|4757828 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 5 ...   205   4e-53
gi|6005952 xylosylprotein beta 1,4-galactosyltransferase 7 [Homo...   112   6e-25
gi|115298684 polypeptide N-acetylgalactosaminyltransferase 6 [Ho...    35   0.075
gi|31542309 chondroitin sulfate synthase 1 [Homo sapiens]              35   0.098
gi|153266878 polypeptide N-acetylgalactosaminyltransferase 3 [Ho...    34   0.17 
gi|74271903 chondroitin sulfate synthase 3 [Homo sapiens]              33   0.49 
gi|24429592 chondroitin sulfate N-acetylgalactosaminyltransferas...    32   0.63 
gi|194473684 chondroitin sulfate N-acetylgalactosaminyltransfera...    32   1.1  
gi|194473683 chondroitin sulfate N-acetylgalactosaminyltransfera...    32   1.1  
gi|17505193 wingless-type MMTV integration site family, member 7...    32   1.1  
gi|5730097 tumor necrosis factor superfamily, member 13b isoform...    30   4.1  
gi|224548983 tumor necrosis factor superfamily, member 13b isofo...    30   4.1  
gi|20149629 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1 ...    30   4.1  
gi|9256610 protocadherin beta 15 precursor [Homo sapiens]              30   4.1  
gi|17402916 wingless-type MMTV integration site family, member 1...    29   7.0  
gi|17402914 wingless-type MMTV integration site family, member 1...    29   7.0  
gi|194018457 N-acetylgalactosaminyltransferase-like 6 [Homo sapi...    28   9.2  
gi|18375528 UPF3 regulator of nonsense transcripts homolog B iso...    28   9.2  
gi|38195091 GalNAc transferase 10 isoform a [Homo sapiens]             28   9.2  
gi|12711674 UPF3 regulator of nonsense transcripts homolog B iso...    28   9.2  

>gi|47078258 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 4
           [Homo sapiens]
          Length = 344

 Score =  713 bits (1841), Expect = 0.0
 Identities = 344/344 (100%), Positives = 344/344 (100%)

Query: 1   MGFNLTFHLSYKFRLLLLLTLCLTVVGWATSNYFVGAIQEIPKAKEFMANFHKTLILGKG 60
           MGFNLTFHLSYKFRLLLLLTLCLTVVGWATSNYFVGAIQEIPKAKEFMANFHKTLILGKG
Sbjct: 1   MGFNLTFHLSYKFRLLLLLTLCLTVVGWATSNYFVGAIQEIPKAKEFMANFHKTLILGKG 60

Query: 61  KTLTNEASTKKVELDNCPSVSPYLRGQSKLIFKPDLTLEEVQAENPKVSRGRYRPQECKA 120
           KTLTNEASTKKVELDNCPSVSPYLRGQSKLIFKPDLTLEEVQAENPKVSRGRYRPQECKA
Sbjct: 61  KTLTNEASTKKVELDNCPSVSPYLRGQSKLIFKPDLTLEEVQAENPKVSRGRYRPQECKA 120

Query: 121 LQRVAILVPHRNREKHLMYLLEHLHPFLQRQQLDYGIYVIHQAEGKKFNRAKLLNVGYLE 180
           LQRVAILVPHRNREKHLMYLLEHLHPFLQRQQLDYGIYVIHQAEGKKFNRAKLLNVGYLE
Sbjct: 121 LQRVAILVPHRNREKHLMYLLEHLHPFLQRQQLDYGIYVIHQAEGKKFNRAKLLNVGYLE 180

Query: 181 ALKEENWDCFIFHDVDLVPENDFNLYKCEEHPKHLVVGRNSTGYRLRYSGYFGGVTALSR 240
           ALKEENWDCFIFHDVDLVPENDFNLYKCEEHPKHLVVGRNSTGYRLRYSGYFGGVTALSR
Sbjct: 181 ALKEENWDCFIFHDVDLVPENDFNLYKCEEHPKHLVVGRNSTGYRLRYSGYFGGVTALSR 240

Query: 241 EQFFKVNGFSNNYWGWGGEDDDLRLRVELQRMKISRPLPEVGKYTMVFHTRDKGNEVNAE 300
           EQFFKVNGFSNNYWGWGGEDDDLRLRVELQRMKISRPLPEVGKYTMVFHTRDKGNEVNAE
Sbjct: 241 EQFFKVNGFSNNYWGWGGEDDDLRLRVELQRMKISRPLPEVGKYTMVFHTRDKGNEVNAE 300

Query: 301 RMKLLHQVSRVWRTDGLSSCSYKLVSVEHNPLYINITVDFWFGA 344
           RMKLLHQVSRVWRTDGLSSCSYKLVSVEHNPLYINITVDFWFGA
Sbjct: 301 RMKLLHQVSRVWRTDGLSSCSYKLVSVEHNPLYINITVDFWFGA 344


>gi|9994175 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 4
           [Homo sapiens]
          Length = 344

 Score =  713 bits (1841), Expect = 0.0
 Identities = 344/344 (100%), Positives = 344/344 (100%)

Query: 1   MGFNLTFHLSYKFRLLLLLTLCLTVVGWATSNYFVGAIQEIPKAKEFMANFHKTLILGKG 60
           MGFNLTFHLSYKFRLLLLLTLCLTVVGWATSNYFVGAIQEIPKAKEFMANFHKTLILGKG
Sbjct: 1   MGFNLTFHLSYKFRLLLLLTLCLTVVGWATSNYFVGAIQEIPKAKEFMANFHKTLILGKG 60

Query: 61  KTLTNEASTKKVELDNCPSVSPYLRGQSKLIFKPDLTLEEVQAENPKVSRGRYRPQECKA 120
           KTLTNEASTKKVELDNCPSVSPYLRGQSKLIFKPDLTLEEVQAENPKVSRGRYRPQECKA
Sbjct: 61  KTLTNEASTKKVELDNCPSVSPYLRGQSKLIFKPDLTLEEVQAENPKVSRGRYRPQECKA 120

Query: 121 LQRVAILVPHRNREKHLMYLLEHLHPFLQRQQLDYGIYVIHQAEGKKFNRAKLLNVGYLE 180
           LQRVAILVPHRNREKHLMYLLEHLHPFLQRQQLDYGIYVIHQAEGKKFNRAKLLNVGYLE
Sbjct: 121 LQRVAILVPHRNREKHLMYLLEHLHPFLQRQQLDYGIYVIHQAEGKKFNRAKLLNVGYLE 180

Query: 181 ALKEENWDCFIFHDVDLVPENDFNLYKCEEHPKHLVVGRNSTGYRLRYSGYFGGVTALSR 240
           ALKEENWDCFIFHDVDLVPENDFNLYKCEEHPKHLVVGRNSTGYRLRYSGYFGGVTALSR
Sbjct: 181 ALKEENWDCFIFHDVDLVPENDFNLYKCEEHPKHLVVGRNSTGYRLRYSGYFGGVTALSR 240

Query: 241 EQFFKVNGFSNNYWGWGGEDDDLRLRVELQRMKISRPLPEVGKYTMVFHTRDKGNEVNAE 300
           EQFFKVNGFSNNYWGWGGEDDDLRLRVELQRMKISRPLPEVGKYTMVFHTRDKGNEVNAE
Sbjct: 241 EQFFKVNGFSNNYWGWGGEDDDLRLRVELQRMKISRPLPEVGKYTMVFHTRDKGNEVNAE 300

Query: 301 RMKLLHQVSRVWRTDGLSSCSYKLVSVEHNPLYINITVDFWFGA 344
           RMKLLHQVSRVWRTDGLSSCSYKLVSVEHNPLYINITVDFWFGA
Sbjct: 301 RMKLLHQVSRVWRTDGLSSCSYKLVSVEHNPLYINITVDFWFGA 344


>gi|4502349 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 3
           [Homo sapiens]
          Length = 393

 Score =  303 bits (776), Expect = 1e-82
 Identities = 152/268 (56%), Positives = 177/268 (66%), Gaps = 2/268 (0%)

Query: 74  LDNCPSVSPYLRGQSKLIFKPDLTLEEVQAENPKVSRG-RYRPQECKALQRVAILVPHRN 132
           L  CP  SP L G   + F P  +L E+   NP+V  G RYRP  C+   R AI+VPHR 
Sbjct: 74  LPYCPERSPLLVGPVSVSFSPVPSLAEIVERNPRVEPGGRYRPAGCEPRSRTAIIVPHRA 133

Query: 133 REKHLMYLLEHLHPFLQRQQLDYGIYVIHQAEGKKFNRAKLLNVGYLEALKEENWDCFIF 192
           RE HL  LL HLHPFLQRQQL YGIYVIHQA    FNRAKLLNVG  EAL++E WDC   
Sbjct: 134 REHHLRLLLYHLHPFLQRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDEEWDCLFL 193

Query: 193 HDVDLVPENDFNLYKCEEH-PKHLVVGRNSTGYRLRYSGYFGGVTALSREQFFKVNGFSN 251
           HDVDL+PEND NLY C+   P+H+ V  N  GY L Y  YFGGV+AL+ +Q+ K+NGF N
Sbjct: 194 HDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYLKMNGFPN 253

Query: 252 NYWGWGGEDDDLRLRVELQRMKISRPLPEVGKYTMVFHTRDKGNEVNAERMKLLHQVSRV 311
            YWGWGGEDDD+  RV L  MKISRP   VG Y MV H  DKGNE N  R  LL +    
Sbjct: 254 EYWGWGGEDDDIATRVRLAGMKISRPPTSVGHYKMVKHRGDKGNEENPHRFDLLVRTQNS 313

Query: 312 WRTDGLSSCSYKLVSVEHNPLYINITVD 339
           W  DG++S +Y+L++ E  PLY NIT D
Sbjct: 314 WTQDGMNSLTYQLLARELGPLYTNITAD 341


>gi|53759113 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 2
           [Homo sapiens]
          Length = 372

 Score =  282 bits (721), Expect = 4e-76
 Identities = 137/268 (51%), Positives = 178/268 (66%), Gaps = 2/268 (0%)

Query: 74  LDNCPSVSPYLRGQSKLIFKPDLTLEEVQAENPKVSRG-RYRPQECKALQRVAILVPHRN 132
           L  CP   P L G+  + F   + LE VQ ENP V  G RY P +C   Q VA+++P R+
Sbjct: 94  LPPCPDSPPGLVGRLLIEFTSPMPLERVQRENPGVLMGGRYTPPDCTPAQTVAVIIPFRH 153

Query: 133 REKHLMYLLEHLHPFLQRQQLDYGIYVIHQAEGKKFNRAKLLNVGYLEALKEEN-WDCFI 191
           RE HL Y L +LHP L+RQ+L YG+YVI+Q     FNRAKLLNVG+LEALKE+  +DCFI
Sbjct: 154 REHHLRYWLHYLHPILRRQRLRYGVYVINQHGEDTFNRAKLLNVGFLEALKEDAAYDCFI 213

Query: 192 FHDVDLVPENDFNLYKCEEHPKHLVVGRNSTGYRLRYSGYFGGVTALSREQFFKVNGFSN 251
           F DVDLVP +D NLY+C + P+H  +  +  G+RL Y+GYFGGV+ LS+ QF ++NGF N
Sbjct: 214 FSDVDLVPMDDRNLYRCGDQPRHFAIAMDKFGFRLPYAGYFGGVSGLSKAQFLRINGFPN 273

Query: 252 NYWGWGGEDDDLRLRVELQRMKISRPLPEVGKYTMVFHTRDKGNEVNAERMKLLHQVSRV 311
            YWGWGGEDDD+  R+ L  MKISRP   +G+Y M+ H RDK NE N +R   +      
Sbjct: 274 EYWGWGGEDDDIFNRISLTGMKISRPDIRIGRYRMIKHDRDKHNEPNPQRFTKIQNTKLT 333

Query: 312 WRTDGLSSCSYKLVSVEHNPLYINITVD 339
            + DG+ S  Y+++ V   PL+ NITVD
Sbjct: 334 MKRDGIGSVRYQVLEVSRQPLFTNITVD 361


>gi|4502347 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 2
           [Homo sapiens]
          Length = 372

 Score =  282 bits (721), Expect = 4e-76
 Identities = 137/268 (51%), Positives = 178/268 (66%), Gaps = 2/268 (0%)

Query: 74  LDNCPSVSPYLRGQSKLIFKPDLTLEEVQAENPKVSRG-RYRPQECKALQRVAILVPHRN 132
           L  CP   P L G+  + F   + LE VQ ENP V  G RY P +C   Q VA+++P R+
Sbjct: 94  LPPCPDSPPGLVGRLLIEFTSPMPLERVQRENPGVLMGGRYTPPDCTPAQTVAVIIPFRH 153

Query: 133 REKHLMYLLEHLHPFLQRQQLDYGIYVIHQAEGKKFNRAKLLNVGYLEALKEEN-WDCFI 191
           RE HL Y L +LHP L+RQ+L YG+YVI+Q     FNRAKLLNVG+LEALKE+  +DCFI
Sbjct: 154 REHHLRYWLHYLHPILRRQRLRYGVYVINQHGEDTFNRAKLLNVGFLEALKEDAAYDCFI 213

Query: 192 FHDVDLVPENDFNLYKCEEHPKHLVVGRNSTGYRLRYSGYFGGVTALSREQFFKVNGFSN 251
           F DVDLVP +D NLY+C + P+H  +  +  G+RL Y+GYFGGV+ LS+ QF ++NGF N
Sbjct: 214 FSDVDLVPMDDRNLYRCGDQPRHFAIAMDKFGFRLPYAGYFGGVSGLSKAQFLRINGFPN 273

Query: 252 NYWGWGGEDDDLRLRVELQRMKISRPLPEVGKYTMVFHTRDKGNEVNAERMKLLHQVSRV 311
            YWGWGGEDDD+  R+ L  MKISRP   +G+Y M+ H RDK NE N +R   +      
Sbjct: 274 EYWGWGGEDDDIFNRISLTGMKISRPDIRIGRYRMIKHDRDKHNEPNPQRFTKIQNTKLT 333

Query: 312 WRTDGLSSCSYKLVSVEHNPLYINITVD 339
            + DG+ S  Y+++ V   PL+ NITVD
Sbjct: 334 MKRDGIGSVRYQVLEVSRQPLFTNITVD 361


>gi|13929462 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 1,
           membrane-bound form [Homo sapiens]
          Length = 398

 Score =  280 bits (716), Expect = 1e-75
 Identities = 137/272 (50%), Positives = 181/272 (66%), Gaps = 1/272 (0%)

Query: 69  TKKVELDNCPSVSPYLRGQSKLIFKPDLTLEEVQAENPKVSRG-RYRPQECKALQRVAIL 127
           T  + L  CP  SP L G   + F   + LE V  +NP V  G RY P++C +  +VAI+
Sbjct: 122 TTALSLPACPEESPLLVGPMLIEFNMPVDLELVAKQNPNVKMGGRYAPRDCVSPHKVAII 181

Query: 128 VPHRNREKHLMYLLEHLHPFLQRQQLDYGIYVIHQAEGKKFNRAKLLNVGYLEALKEENW 187
           +P RNR++HL Y L +LHP LQRQQLDYGIYVI+QA    FNRAKLLNVG+ EALK+ ++
Sbjct: 182 IPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQAGDTIFNRAKLLNVGFQEALKDYDY 241

Query: 188 DCFIFHDVDLVPENDFNLYKCEEHPKHLVVGRNSTGYRLRYSGYFGGVTALSREQFFKVN 247
            CF+F DVDL+P ND N Y+C   P+H+ V  +  G+ L Y  YFGGV+ALS++QF  +N
Sbjct: 242 TCFVFSDVDLIPMNDHNAYRCFSQPRHISVAMDKFGFSLPYVQYFGGVSALSKQQFLTIN 301

Query: 248 GFSNNYWGWGGEDDDLRLRVELQRMKISRPLPEVGKYTMVFHTRDKGNEVNAERMKLLHQ 307
           GF NNYWGWGGEDDD+  R+  + M ISRP   VG+  M+ H+RDK NE N +R   +  
Sbjct: 302 GFPNNYWGWGGEDDDIFNRLVFRGMSISRPNAVVGRCRMIRHSRDKKNEPNPQRFDRIAH 361

Query: 308 VSRVWRTDGLSSCSYKLVSVEHNPLYINITVD 339
                 +DGL+S +Y+++ V+  PLY  ITVD
Sbjct: 362 TKETMLSDGLNSLTYQVLDVQRYPLYTQITVD 393


>gi|190570165 beta-1,4-galactosyltransferase 6 [Homo sapiens]
          Length = 382

 Score =  206 bits (524), Expect = 2e-53
 Identities = 113/275 (41%), Positives = 153/275 (55%), Gaps = 23/275 (8%)

Query: 77  CPSVSPYLRG------------QSKLIFKPDLTLEEVQAENPKVSRGRYRPQECKALQRV 124
           CP   PY+RG            +   +F  DL +E           G +RP++CK   +V
Sbjct: 108 CPEKLPYMRGFLNVNVSEVSFDEIHQLFSKDLDIEP---------GGHWRPKDCKPRWKV 158

Query: 125 AILVPHRNREKHLMYLLEHLHPFLQRQQLDYGIYVIHQAEGKKFNRAKLLNVGYLEALKE 184
           A+L+P RNR +HL     HL P LQ+Q+L++  YVI Q   + FNRA L NVG+ EA+K+
Sbjct: 159 AVLIPFRNRHEHLPIFFLHLIPMLQKQRLEFAFYVIEQTGTQPFNRAMLFNVGFKEAMKD 218

Query: 185 ENWDCFIFHDVDLVPENDFNLYKCEEHPKHLVVGRNSTGYRLRYSGYFGGVTALSREQFF 244
             WDC IFHDVD +PEND N Y C E P+H     +   Y L Y  +FGGV+ L+ EQF 
Sbjct: 219 SVWDCVIFHDVDHLPENDRNYYGCGEMPRHFAAKLDKYMYILPYKEFFGGVSGLTVEQFR 278

Query: 245 KVNGFSNNYWGWGGEDDDLRLRVELQRMKISRPLPEVGKYTMVFHTRDKGNEVNAERMKL 304
           K+NGF N +WGWGGEDDDL  RV      ++RP  ++GKY  + H   +G      R KL
Sbjct: 279 KINGFPNAFWGWGGEDDDLWNRVHYAGYNVTRPEGDLGKYKSIPH-HHRGEVQFLGRYKL 337

Query: 305 LHQVSRVWRTDGLSSCSYKLVSVEHNPLYINITVD 339
           L         DGL++  Y+   +  + LY NI+V+
Sbjct: 338 LRYSKERQYIDGLNNLIYR-PKILVDRLYTNISVN 371


>gi|4757828 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 5
           [Homo sapiens]
          Length = 388

 Score =  205 bits (522), Expect = 4e-53
 Identities = 104/243 (42%), Positives = 149/243 (61%), Gaps = 3/243 (1%)

Query: 98  LEEVQAENPKVSRG-RYRPQECKALQRVAILVPHRNREKHLMYLLEHLHPFLQRQQLDYG 156
           + E+ +++P +  G  ++P +C    +VAIL+P RNR +HL  L  HL P LQRQ+L + 
Sbjct: 137 IHELFSKDPTIKLGGHWKPSDCMPRWKVAILIPFRNRHEHLPVLFRHLLPMLQRQRLQFA 196

Query: 157 IYVIHQAEGKKFNRAKLLNVGYLEALKEENWDCFIFHDVDLVPENDFNLYKCEEHPKHLV 216
            YV+ Q   + FNRA L NVG+ EA+K+ +WDC IFHDVD +PE+D N Y C + P+H  
Sbjct: 197 FYVVEQVGTQPFNRAMLFNVGFQEAMKDLDWDCLIFHDVDHIPESDRNYYGCGQMPRHFA 256

Query: 217 VGRNSTGYRLRYSGYFGGVTALSREQFFKVNGFSNNYWGWGGEDDDLRLRVELQRMKISR 276
              +   Y L Y+ +FGGV+ L+ EQF K+NGF N +WGWGGEDDDL  RV+     +SR
Sbjct: 257 TKLDKYMYLLPYTEFFGGVSGLTVEQFRKINGFPNAFWGWGGEDDDLWNRVQNAGYSVSR 316

Query: 277 PLPEVGKYTMVFHTRDKGNEVNAERMKLLHQVSRVWRTDGLSSCSYKLVSVEHNPLYINI 336
           P  + GKY  + H   +G      R  LL +       DGL++ +Y   ++ ++ LY NI
Sbjct: 317 PEGDTGKYKSIPH-HHRGEVQFLGRYALLRKSKERQGLDGLNNLNY-FANITYDALYKNI 374

Query: 337 TVD 339
           TV+
Sbjct: 375 TVN 377


>gi|6005952 xylosylprotein beta 1,4-galactosyltransferase 7 [Homo
           sapiens]
          Length = 327

 Score =  112 bits (279), Expect = 6e-25
 Identities = 70/207 (33%), Positives = 110/207 (53%), Gaps = 7/207 (3%)

Query: 123 RVAILVPHRNREKHLMYLLEHLHPFLQRQQLDYGIYVIHQAEGKKFNRAKLLNVGYLEAL 182
           R+A+LVP R R + L+  + H+  FL R+++ + IYV++Q +  +FNRA L+NVG+LE+ 
Sbjct: 94  RLAVLVPFRERFEELLVFVPHMRRFLSRKKIRHHIYVLNQVDHFRFNRAALINVGFLES- 152

Query: 183 KEENWDCFIFHDVDLVPENDFNLYKC-EEHPKHLVVGRNSTGYRLRYSGYFGGVTALSRE 241
              + D    HDVDL+P N+   Y   E  P H+        Y   Y  Y GG+  LS++
Sbjct: 153 -SNSTDYIAMHDVDLLPLNEELDYGFPEAGPFHVASPELHPLY--HYKTYVGGILLLSKQ 209

Query: 242 QFFKVNGFSNNYWGWGGEDDDLRLRVELQRMKISRPLPEVGKYTMVFHTRDKG-NEVNAE 300
            +   NG SN +WGWG EDD+   R++   +++ RP      Y    H  D    + + +
Sbjct: 210 HYRLCNGMSNRFWGWGREDDEFYRRIKGAGLQLFRPSGITTGYKTFRHLHDPAWRKRDQK 269

Query: 301 RMKLLHQVS-RVWRTDGLSSCSYKLVS 326
           R+    Q   +V R  GL++  Y + S
Sbjct: 270 RIAAQKQEQFKVDREGGLNTVKYHVAS 296


>gi|115298684 polypeptide N-acetylgalactosaminyltransferase 6 [Homo
           sapiens]
          Length = 622

 Score = 35.4 bits (80), Expect = 0.075
 Identities = 43/189 (22%), Positives = 70/189 (37%), Gaps = 48/189 (25%)

Query: 121 LQRVAILVPHRNREKHLMYLLEHLHPFLQRQQLDYGIYVIHQAEGKKFNRAKLL--NVGY 178
           L +  ILV   + E+HL    E L  ++++ Q+   + V+ Q E K    A+LL  +V  
Sbjct: 208 LLKEIILVDDASTEEHLK---EKLEQYVKQLQV---VRVVRQEERKGLITARLLGASVAQ 261

Query: 179 LEALKEENWDCFIFH--------------------DVDLVPENDFNLYK----------- 207
            E L   +  C  FH                    D+  +  N F   K           
Sbjct: 262 AEVLTFLDAHCECFHGWLEPLLARIAEDKTVVVSPDIVTIDLNTFEFAKPVQRGRVHSRG 321

Query: 208 ---------CEEHPKHLVVGRNSTGYRLRYSGYFGGVTALSREQFFKVNGFSNNYWGWGG 258
                     E  P H    R    Y ++   + GG+ ++S+  F  +  + N    WGG
Sbjct: 322 NFDWSLTFGWETLPPHEKQRRKDETYPIKSPTFAGGLFSISKSYFEHIGTYDNQMEIWGG 381

Query: 259 EDDDLRLRV 267
           E+ ++  RV
Sbjct: 382 ENVEMSFRV 390


>gi|31542309 chondroitin sulfate synthase 1 [Homo sapiens]
          Length = 802

 Score = 35.0 bits (79), Expect = 0.098
 Identities = 40/143 (27%), Positives = 58/143 (40%), Gaps = 35/143 (24%)

Query: 167 KFNRAKLLNVGYLEALKEENWDCFIFHDVDLVPENDFNLYKCEEH--------------- 211
           +F+RA  L VG   + +  N     F DVDLV   +F L +C  +               
Sbjct: 607 EFSRALALEVG---SSQFNNESLLFFCDVDLVFTTEF-LQRCRANTVLGQQIYFPIIFSQ 662

Query: 212 --PKHLVVGR----------NSTGYRLRYSGYFGGVTALSREQFFKVNGFSNNYWGWGGE 259
             PK +  G+            TG+   +  Y  G+T + +    +V GF  +  GWG E
Sbjct: 663 YDPKIVYSGKVPSDNHFAFTQKTGF---WRNYGFGITCIYKGDLVRVGGFDVSIQGWGLE 719

Query: 260 DDDLRLRVELQRMKISRPLPEVG 282
           D DL  +V    +K  R   EVG
Sbjct: 720 DVDLFNKVVQAGLKTFRS-QEVG 741


>gi|153266878 polypeptide N-acetylgalactosaminyltransferase 3 [Homo
           sapiens]
          Length = 633

 Score = 34.3 bits (77), Expect = 0.17
 Identities = 37/169 (21%), Positives = 59/169 (34%), Gaps = 43/169 (25%)

Query: 142 EHLHPFLQRQQLDYGIY-VIHQAEGKKFNRAKLLNV-------------------GYLEA 181
           E+LH  L      + I  ++ Q E K    A+LL                     G+LE 
Sbjct: 230 EYLHDKLDEYVKQFSIVKIVRQRERKGLITARLLGATVATAETLTFLDAHCECFYGWLEP 289

Query: 182 LKE---ENWDCFIFHDVDLVPENDFNLYK--------------------CEEHPKHLVVG 218
           L     EN+   +  D+  +  N F   K                     E  P H    
Sbjct: 290 LLARIAENYTAVVSPDIASIDLNTFEFNKPSPYGSNHNRGNFDWSLSFGWESLPDHEKQR 349

Query: 219 RNSTGYRLRYSGYFGGVTALSREQFFKVNGFSNNYWGWGGEDDDLRLRV 267
           R    Y ++   + GG+ ++S+E F  +  +      WGGE+ ++  RV
Sbjct: 350 RKDETYPIKTPTFAGGLFSISKEYFEYIGSYDEEMEIWGGENIEMSFRV 398


>gi|74271903 chondroitin sulfate synthase 3 [Homo sapiens]
          Length = 882

 Score = 32.7 bits (73), Expect = 0.49
 Identities = 35/129 (27%), Positives = 50/129 (38%), Gaps = 27/129 (20%)

Query: 185 ENWDCFIFHDVDLVPENDFNLYKCEEH-----------------PKHLVVGRNSTGYRLR 227
           +N    +F DVDL+   DF L +C ++                 PK    G   T     
Sbjct: 709 DNDTLLLFCDVDLIFREDF-LQRCRDNTIQGQQVYYPIIFSQYDPKVTNGGNPPTDDYFI 767

Query: 228 YSGYFG-------GVTALSREQFFKVNGFSNNYWGWGGEDDDLRLRVELQRMKISRPLPE 280
           +S   G       G+T + +       GF  +  GWG ED DL  +V L  ++  R   E
Sbjct: 768 FSKKTGFWRDYGYGITCIYKSDLLGAGGFDTSIQGWGLEDVDLYNKVILSGLRPFRS-QE 826

Query: 281 VGKYTMVFH 289
           VG    +FH
Sbjct: 827 VG-VVHIFH 834


>gi|24429592 chondroitin sulfate N-acetylgalactosaminyltransferase 2
           [Homo sapiens]
          Length = 542

 Score = 32.3 bits (72), Expect = 0.63
 Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 10/121 (8%)

Query: 191 IFHDVDLVPENDFNLYKCEEHP---KHLVVGRNSTGYRLRYSGYFGGVTALSREQFFKVN 247
           +F+ V     N   +Y  +E P   +  +V +  +G+   +  +  G+T   R  F  + 
Sbjct: 390 VFYPVVFSLYNPAIVYANQEVPPPVEQQLVHKKDSGF---WRDFGFGMTCQYRSDFLTIG 446

Query: 248 GFSNNYWGWGGEDDDL-RLRVELQRMKISRPLPEVGKYTMVFHTRDKGNEVNAERMKLLH 306
           GF     GWGGED  L R  +    + I  P+P +     ++H +   +E+  E+ ++  
Sbjct: 447 GFDMEVKGWGGEDVHLYRKYLHGDLIVIRTPVPGL---FHLWHEKRCADELTPEQYRMCI 503

Query: 307 Q 307
           Q
Sbjct: 504 Q 504


>gi|194473684 chondroitin sulfate N-acetylgalactosaminyltransferase
           1 [Homo sapiens]
          Length = 532

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 2/74 (2%)

Query: 234 GVTALSREQFFKVNGFSNNYWGWGGEDDDLRLRVELQRMKISRPLPEVGKYTMVFHTRDK 293
           G+T   R  F  + GF  +  GWGGED  L  R  L    I    P  G + + +H +  
Sbjct: 424 GMTCQYRSDFINIGGFDLDIKGWGGEDVHL-YRKYLHSNLIVVRTPVRGLFHL-WHEKRC 481

Query: 294 GNEVNAERMKLLHQ 307
            +E+  E+ K+  Q
Sbjct: 482 MDELTPEQYKMCMQ 495


>gi|194473683 chondroitin sulfate N-acetylgalactosaminyltransferase
           1 [Homo sapiens]
          Length = 532

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 2/74 (2%)

Query: 234 GVTALSREQFFKVNGFSNNYWGWGGEDDDLRLRVELQRMKISRPLPEVGKYTMVFHTRDK 293
           G+T   R  F  + GF  +  GWGGED  L  R  L    I    P  G + + +H +  
Sbjct: 424 GMTCQYRSDFINIGGFDLDIKGWGGEDVHL-YRKYLHSNLIVVRTPVRGLFHL-WHEKRC 481

Query: 294 GNEVNAERMKLLHQ 307
            +E+  E+ K+  Q
Sbjct: 482 MDELTPEQYKMCMQ 495


>gi|17505193 wingless-type MMTV integration site family, member 7B
           precursor [Homo sapiens]
          Length = 349

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 254 WGWGGEDDDLRLRVELQRMKI-SRPLPEVGKYTMVFHTRDKGNEVNAERMKL 304
           W WGG   D+R  ++  R  + +R + +  +  M  H  + G +V  +RM+L
Sbjct: 147 WKWGGCSADVRYGIDFSRRFVDAREIKKNARRLMNLHNNEAGRKVLEDRMQL 198


>gi|5730097 tumor necrosis factor superfamily, member 13b isoform 1
           [Homo sapiens]
          Length = 285

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 17/104 (16%)

Query: 15  LLLLLTLCLTVVGWATSNYFVGAIQ-EIPKAKEFMANFHKTLILGKGKTLTNEASTKKVE 73
           LL LL+ CLTVV    S Y V A+Q ++   +  +   H        + L   A   K  
Sbjct: 53  LLALLSCCLTVV----SFYQVAALQGDLASLRAELQGHH-------AEKLPAGAGAPKAG 101

Query: 74  LDNCPSVSPYLRGQSKLIFKPDLTLEEVQAENPKVSRGRYRPQE 117
           L+  P+V+  L+     IF+P    E   ++N +  R    P+E
Sbjct: 102 LEEAPAVTAGLK-----IFEPPAPGEGNSSQNSRNKRAVQGPEE 140


>gi|224548983 tumor necrosis factor superfamily, member 13b isoform
           2 [Homo sapiens]
          Length = 266

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 17/104 (16%)

Query: 15  LLLLLTLCLTVVGWATSNYFVGAIQ-EIPKAKEFMANFHKTLILGKGKTLTNEASTKKVE 73
           LL LL+ CLTVV    S Y V A+Q ++   +  +   H        + L   A   K  
Sbjct: 53  LLALLSCCLTVV----SFYQVAALQGDLASLRAELQGHH-------AEKLPAGAGAPKAG 101

Query: 74  LDNCPSVSPYLRGQSKLIFKPDLTLEEVQAENPKVSRGRYRPQE 117
           L+  P+V+  L+     IF+P    E   ++N +  R    P+E
Sbjct: 102 LEEAPAVTAGLK-----IFEPPAPGEGNSSQNSRNKRAVQGPEE 140


>gi|20149629 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1
           [Homo sapiens]
          Length = 455

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 9/112 (8%)

Query: 38  IQEIPKAKEFMANFHKTLILGKGKTLTNEASTKKVELDNCPSVSPYLRGQSKLIFKPDLT 97
           I  +   K F     K L++ +   + N     + E+D    V P  R +   +F   +T
Sbjct: 154 IDHLENTKGFNLRALKYLVMDEADRILN--MDFETEVDKILKVIP--RDRKTFLFSATMT 209

Query: 98  -----LEEVQAENPKVSRGRYRPQECKALQRVAILVPHRNREKHLMYLLEHL 144
                L+    +NP       + Q  + LQ+  I +P + ++ +L+Y+L  L
Sbjct: 210 KKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNEL 261


>gi|9256610 protocadherin beta 15 precursor [Homo sapiens]
          Length = 787

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 5/62 (8%)

Query: 15 LLLLLTLCLTVVGWATSNYFVGAIQEIPKAKEFMANFHKTLILGKGKTLTNEASTKKVEL 74
          L+LLL L +T+ GW    Y   ++ E  +   F+AN    L LG G+    E   + V  
Sbjct: 15 LILLLLLEVTLAGWEPRRY---SVMEETERGSFVANLANDLGLGVGELA--ERGARVVSE 69

Query: 75 DN 76
          DN
Sbjct: 70 DN 71


>gi|17402916 wingless-type MMTV integration site family, member 16
           isoform 1 precursor [Homo sapiens]
          Length = 365

 Score = 28.9 bits (63), Expect = 7.0
 Identities = 31/139 (22%), Positives = 50/139 (35%), Gaps = 22/139 (15%)

Query: 183 KEENWDCFIFHDVDLVPENDFNLYKCEEHPKHLVVGRNSTG--YRLRYSGYF-------- 232
           + E W+C I       P     L+  E     L  G   T   Y +  +G          
Sbjct: 86  RHERWNCMITAAATTAPMGASPLFGYE-----LSSGTKETAFIYAVMAAGLVHSVTRSCS 140

Query: 233 -GGVTALSREQFFKVNGFSNNYWGWGGEDDDLRLRVELQRMKISRPLPE-VGK-----YT 285
            G +T  S +   +  G ++  W WGG  DD++  +   R  +  P+    GK       
Sbjct: 141 AGNMTECSCDTTLQNGGSASEGWHWGGCSDDVQYGMWFSRKFLDFPIGNTTGKENKVLLA 200

Query: 286 MVFHTRDKGNEVNAERMKL 304
           M  H  + G +  A+ M +
Sbjct: 201 MNLHNNEAGRQAVAKLMSV 219


>gi|17402914 wingless-type MMTV integration site family, member 16
           isoform 2 [Homo sapiens]
          Length = 355

 Score = 28.9 bits (63), Expect = 7.0
 Identities = 31/139 (22%), Positives = 50/139 (35%), Gaps = 22/139 (15%)

Query: 183 KEENWDCFIFHDVDLVPENDFNLYKCEEHPKHLVVGRNSTG--YRLRYSGYF-------- 232
           + E W+C I       P     L+  E     L  G   T   Y +  +G          
Sbjct: 76  RHERWNCMITAAATTAPMGASPLFGYE-----LSSGTKETAFIYAVMAAGLVHSVTRSCS 130

Query: 233 -GGVTALSREQFFKVNGFSNNYWGWGGEDDDLRLRVELQRMKISRPLPE-VGK-----YT 285
            G +T  S +   +  G ++  W WGG  DD++  +   R  +  P+    GK       
Sbjct: 131 AGNMTECSCDTTLQNGGSASEGWHWGGCSDDVQYGMWFSRKFLDFPIGNTTGKENKVLLA 190

Query: 286 MVFHTRDKGNEVNAERMKL 304
           M  H  + G +  A+ M +
Sbjct: 191 MNLHNNEAGRQAVAKLMSV 209


>gi|194018457 N-acetylgalactosaminyltransferase-like 6 [Homo
           sapiens]
          Length = 601

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 11/35 (31%), Positives = 21/35 (60%)

Query: 233 GGVTALSREQFFKVNGFSNNYWGWGGEDDDLRLRV 267
           GG+ A+ R+ F+++ G+      WGGE  ++  +V
Sbjct: 314 GGLFAVDRKWFWELGGYDPGLEIWGGEQYEISFKV 348


>gi|18375528 UPF3 regulator of nonsense transcripts homolog B
           isoform 1 [Homo sapiens]
          Length = 483

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 10/81 (12%)

Query: 39  QEIPKAKEFMANFHKTLILGKGKTLTNEASTKKVELDNCPSVSPYLRGQS----KLIFKP 94
           QE P   EF A F K       K  T +  TK   +D+ P    +L   +    K+   P
Sbjct: 125 QEYPAIVEF-APFQKA-----AKKKTKKRDTKVGTIDDDPEYRKFLESYATDNEKMTSTP 178

Query: 95  DLTLEEVQAENPKVSRGRYRP 115
           +  LEE++A+N ++   +  P
Sbjct: 179 ETLLEEIEAKNRELIAKKTTP 199


>gi|38195091 GalNAc transferase 10 isoform a [Homo sapiens]
          Length = 603

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 11/35 (31%), Positives = 21/35 (60%)

Query: 233 GGVTALSREQFFKVNGFSNNYWGWGGEDDDLRLRV 267
           GG+ A+ R+ F+++ G+      WGGE  ++  +V
Sbjct: 319 GGLFAVDRKWFWELGGYDPGLEIWGGEQYEISFKV 353


>gi|12711674 UPF3 regulator of nonsense transcripts homolog B
           isoform 2 [Homo sapiens]
          Length = 470

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 10/81 (12%)

Query: 39  QEIPKAKEFMANFHKTLILGKGKTLTNEASTKKVELDNCPSVSPYLRGQS----KLIFKP 94
           QE P   EF A F K       K  T +  TK   +D+ P    +L   +    K+   P
Sbjct: 125 QEYPAIVEF-APFQKA-----AKKKTKKRDTKVGTIDDDPEYRKFLESYATDNEKMTSTP 178

Query: 95  DLTLEEVQAENPKVSRGRYRP 115
           +  LEE++A+N ++   +  P
Sbjct: 179 ETLLEEIEAKNRELIAKKTTP 199


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.139    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,853,447
Number of Sequences: 37866
Number of extensions: 553796
Number of successful extensions: 1234
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1205
Number of HSP's gapped (non-prelim): 29
length of query: 344
length of database: 18,247,518
effective HSP length: 103
effective length of query: 241
effective length of database: 14,347,320
effective search space: 3457704120
effective search space used: 3457704120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.