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Search of human proteins with 46409512
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|46409512 hypothetical protein LOC400359 [Homo sapiens]
(179 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|46409512 hypothetical protein LOC400359 [Homo sapiens] 371 e-103
gi|86793109 complement receptor 1 isoform S precursor [Homo sapi... 30 1.1
gi|86793036 complement receptor 1 isoform F precursor [Homo sapi... 30 1.1
gi|7662274 epidermal Langerhans cell protein LCP1 [Homo sapiens] 30 1.4
gi|45439357 elongin A2 [Homo sapiens] 30 1.4
gi|40788007 FYN binding protein (FYB-120/130) isoform 2 [Homo sa... 29 2.5
gi|42476118 FYN binding protein (FYB-120/130) isoform 1 [Homo sa... 29 2.5
gi|148922949 complement component (3b/4b) receptor 1-like [Homo ... 28 3.2
gi|23510413 sorting nexin 26 [Homo sapiens] 28 3.2
gi|154816198 transcription elongation factor B polypeptide 3C-li... 28 3.2
gi|156938279 transcription elongation factor B polypeptide 3C [H... 28 3.2
gi|24308440 family with sequence similarity 125, member A [Homo ... 28 3.2
gi|45827729 scribble isoform b [Homo sapiens] 28 4.2
gi|45827731 scribble isoform a [Homo sapiens] 28 4.2
gi|239756914 PREDICTED: hypothetical protein [Homo sapiens] 28 5.5
gi|239751409 PREDICTED: hypothetical protein XP_002347840 [Homo ... 28 5.5
gi|239745919 PREDICTED: hypothetical protein XP_002343617 [Homo ... 28 5.5
gi|45120115 hypothetical protein LOC56905 [Homo sapiens] 28 5.5
gi|134276943 separase [Homo sapiens] 27 7.2
gi|239744047 PREDICTED: hypothetical protein [Homo sapiens] 27 7.2
gi|118600983 chondroitin sulfate proteoglycan 3 [Homo sapiens] 27 7.2
gi|166064027 cyclin-dependent kinase-like 3 isoform 1 [Homo sapi... 27 7.2
gi|166064025 cyclin-dependent kinase-like 3 isoform 2 [Homo sapi... 27 7.2
gi|28827807 NLR family, pyrin domain containing 10 [Homo sapiens] 27 7.2
gi|239753364 PREDICTED: hypothetical protein [Homo sapiens] 27 9.4
gi|239747932 PREDICTED: hypothetical protein [Homo sapiens] 27 9.4
gi|239741826 PREDICTED: hypothetical protein [Homo sapiens] 27 9.4
gi|239741651 PREDICTED: hypothetical protein XP_002342270 [Homo ... 27 9.4
>gi|46409512 hypothetical protein LOC400359 [Homo sapiens]
Length = 179
Score = 371 bits (953), Expect = e-103
Identities = 179/179 (100%), Positives = 179/179 (100%)
Query: 1 MELQGAQEDLGISLSSPRRNHETRPGSKAKGRSSICLQASVWMAGGKLRLRASEHLTQGH 60
MELQGAQEDLGISLSSPRRNHETRPGSKAKGRSSICLQASVWMAGGKLRLRASEHLTQGH
Sbjct: 1 MELQGAQEDLGISLSSPRRNHETRPGSKAKGRSSICLQASVWMAGGKLRLRASEHLTQGH 60
Query: 61 QQELRDWNLGEDASLLFSKSPFGAGKLIQAPAHVFRQCWVQGNAWISCITKFDSKRSPEV 120
QQELRDWNLGEDASLLFSKSPFGAGKLIQAPAHVFRQCWVQGNAWISCITKFDSKRSPEV
Sbjct: 61 QQELRDWNLGEDASLLFSKSPFGAGKLIQAPAHVFRQCWVQGNAWISCITKFDSKRSPEV 120
Query: 121 ASSPSYLTVPRRSPLPVFLRPSDRCVCGGCYLGKSTRRRACQSLLSDPLGVTFPTQTRP 179
ASSPSYLTVPRRSPLPVFLRPSDRCVCGGCYLGKSTRRRACQSLLSDPLGVTFPTQTRP
Sbjct: 121 ASSPSYLTVPRRSPLPVFLRPSDRCVCGGCYLGKSTRRRACQSLLSDPLGVTFPTQTRP 179
>gi|86793109 complement receptor 1 isoform S precursor [Homo
sapiens]
Length = 2489
Score = 30.0 bits (66), Expect = 1.1
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 20 NHETRPGSKAKGRSSICLQASVWMAGGKLRLR 51
N+E RPG + S ICL+ SVW G K R R
Sbjct: 70 NYECRPGYSGRPFSIICLKNSVW-TGAKDRCR 100
>gi|86793036 complement receptor 1 isoform F precursor [Homo
sapiens]
Length = 2039
Score = 30.0 bits (66), Expect = 1.1
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 20 NHETRPGSKAKGRSSICLQASVWMAGGKLRLR 51
N+E RPG + S ICL+ SVW G K R R
Sbjct: 70 NYECRPGYSGRPFSIICLKNSVW-TGAKDRCR 100
>gi|7662274 epidermal Langerhans cell protein LCP1 [Homo sapiens]
Length = 621
Score = 29.6 bits (65), Expect = 1.4
Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 118 PEVASSPSYLTVPRRSPLPVFLRPSDRCVCGGC 150
PEV SPS + V S PV L P RCV GC
Sbjct: 546 PEV-ESPSQMDVELVSGSPVALSPQPRCVRSGC 577
>gi|45439357 elongin A2 [Homo sapiens]
Length = 753
Score = 29.6 bits (65), Expect = 1.4
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 22/90 (24%)
Query: 91 PAHVFRQCWVQGNAW-------ISCITKFDSKRSPEVASSPSY---LTVPRR---SPLPV 137
P+HVF + W AW +S S+ PE SSP + P R + +PV
Sbjct: 455 PSHVFSELWDLSEAWMQANYDPLSDSDSMTSQAKPEALSSPKFREEAAFPGRRVNAKMPV 514
Query: 138 F--LRPSDRCVCGGCYLGKSTRRRACQSLL 165
+ RP+ C L T R+ C +L
Sbjct: 515 YSGSRPA-------CQLQVPTLRQQCAQVL 537
>gi|40788007 FYN binding protein (FYB-120/130) isoform 2 [Homo
sapiens]
Length = 783
Score = 28.9 bits (63), Expect = 2.5
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 88 IQAPAHVFRQCWVQGNA----WISCITKFDSKRSPEVASSPSYLTVPRRSPLPVFLRPS 142
IQA ++F QGNA S + KF S + P VA PS P + P P FL+P+
Sbjct: 32 IQARKNLFNN---QGNASPPAGPSNVPKFGSPKPP-VAVKPSSEEKPDKEPKPPFLKPT 86
>gi|42476118 FYN binding protein (FYB-120/130) isoform 1 [Homo
sapiens]
Length = 829
Score = 28.9 bits (63), Expect = 2.5
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 88 IQAPAHVFRQCWVQGNA----WISCITKFDSKRSPEVASSPSYLTVPRRSPLPVFLRPS 142
IQA ++F QGNA S + KF S + P VA PS P + P P FL+P+
Sbjct: 32 IQARKNLFNN---QGNASPPAGPSNVPKFGSPKPP-VAVKPSSEEKPDKEPKPPFLKPT 86
>gi|148922949 complement component (3b/4b) receptor 1-like [Homo
sapiens]
Length = 569
Score = 28.5 bits (62), Expect = 3.2
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 20 NHETRPGSKAKGRSSICLQASVW 42
N+E RPG + S ICL+ SVW
Sbjct: 62 NYECRPGYSGRPFSIICLKNSVW 84
>gi|23510413 sorting nexin 26 [Homo sapiens]
Length = 1126
Score = 28.5 bits (62), Expect = 3.2
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 12/74 (16%)
Query: 72 DASLLFSKSPFGAGKL-IQAPAHVFRQCWVQGNAWISCITKFDSKRSPEVASSPSYLTVP 130
D SLL S+ P G + ++ PA V Q G + +PE A+ S +VP
Sbjct: 815 DGSLLRSQRPMGTSRRGLRGPAQVSAQLRAGGGG----------RDAPEAAAQ-SPCSVP 863
Query: 131 RRSPLPVFLRPSDR 144
+ P P F P+ R
Sbjct: 864 SQVPTPGFFSPAPR 877
>gi|154816198 transcription elongation factor B polypeptide 3C-like
[Homo sapiens]
Length = 546
Score = 28.5 bits (62), Expect = 3.2
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
Query: 91 PAHVFRQCWVQGNAW-------ISCITKFDSKRSPEVASSPS 125
P+HVF + W AW +S S+ +PE S+P+
Sbjct: 263 PSHVFSELWDPSEAWMQANYDLLSAFEAMTSQANPEALSAPT 304
>gi|156938279 transcription elongation factor B polypeptide 3C [Homo
sapiens]
Length = 546
Score = 28.5 bits (62), Expect = 3.2
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
Query: 91 PAHVFRQCWVQGNAW-------ISCITKFDSKRSPEVASSPS 125
P+HVF + W AW +S S+ +PE S+P+
Sbjct: 263 PSHVFSELWDPSEAWMQANYDLLSAFEAMTSQANPEALSAPA 304
>gi|24308440 family with sequence similarity 125, member A [Homo
sapiens]
Length = 273
Score = 28.5 bits (62), Expect = 3.2
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 90 APAHVFRQCWVQGNAWISCITKFDSKRSPEVASSPSYLTVPRRSPLPVFLRPSDRCVCGG 149
APA F + + Q + + C++ S +P+ V +SPLP+ P C
Sbjct: 38 APAS-FGKSFAQKSGYFLCLSSLGSLENPQENVVADIQIVVDKSPLPLGFSPV--CDPMD 94
Query: 150 CYLGKSTRRRACQSLLSDPLGVT 172
S ++R C LL PLG T
Sbjct: 95 SKASVSKKKRMCVKLL--PLGAT 115
>gi|45827729 scribble isoform b [Homo sapiens]
Length = 1630
Score = 28.1 bits (61), Expect = 4.2
Identities = 23/71 (32%), Positives = 27/71 (38%)
Query: 8 EDLGISLSSPRRNHETRPGSKAKGRSSICLQASVWMAGGKLRLRASEHLTQGHQQELRDW 67
E LGIS+ R H P I + AG RLR L + +QQ L
Sbjct: 1109 ERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGL 1168
Query: 68 NLGEDASLLFS 78
GE LL S
Sbjct: 1169 THGEAVQLLRS 1179
>gi|45827731 scribble isoform a [Homo sapiens]
Length = 1655
Score = 28.1 bits (61), Expect = 4.2
Identities = 23/71 (32%), Positives = 27/71 (38%)
Query: 8 EDLGISLSSPRRNHETRPGSKAKGRSSICLQASVWMAGGKLRLRASEHLTQGHQQELRDW 67
E LGIS+ R H P I + AG RLR L + +QQ L
Sbjct: 1109 ERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGL 1168
Query: 68 NLGEDASLLFS 78
GE LL S
Sbjct: 1169 THGEAVQLLRS 1179
>gi|239756914 PREDICTED: hypothetical protein [Homo sapiens]
Length = 241
Score = 27.7 bits (60), Expect = 5.5
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 20 NHETRPGSKAKGRSSICLQASVWMAGGKLRLRASEHLTQGHQQEL--RDWNLGEDASLLF 77
N + RPG+ G +I L+ + + G L R L G Q++ R G+ +
Sbjct: 130 NPQGRPGASL-GAGAISLRQRLEVHGEGLLFRLGRPLPVGPGQDVEHRPTEAGQQQAQHV 188
Query: 78 SKSPFGAGKLIQAPAHVFRQCWVQ 101
+ G I APA V +QC +Q
Sbjct: 189 GQDTLGLKCAILAPAGVEQQCLLQ 212
>gi|239751409 PREDICTED: hypothetical protein XP_002347840 [Homo
sapiens]
Length = 235
Score = 27.7 bits (60), Expect = 5.5
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 20 NHETRPGSKAKGRSSICLQASVWMAGGKLRLRASEHLTQGHQQEL--RDWNLGEDASLLF 77
N + RPG+ G +I L+ + + G L R L G Q++ R G+ +
Sbjct: 124 NPQGRPGASL-GAGAISLRQRLEVHGEGLLFRLGRPLPVGPGQDVEHRPTEAGQQQAQHV 182
Query: 78 SKSPFGAGKLIQAPAHVFRQCWVQ 101
+ G I APA V +QC +Q
Sbjct: 183 GQDTLGLKCAILAPAGVEQQCLLQ 206
>gi|239745919 PREDICTED: hypothetical protein XP_002343617 [Homo
sapiens]
Length = 235
Score = 27.7 bits (60), Expect = 5.5
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 20 NHETRPGSKAKGRSSICLQASVWMAGGKLRLRASEHLTQGHQQEL--RDWNLGEDASLLF 77
N + RPG+ G +I L+ + + G L R L G Q++ R G+ +
Sbjct: 124 NPQGRPGASL-GAGAISLRQRLEVHGEGLLFRLGRPLPVGPGQDVEHRPTEAGQQQAQHV 182
Query: 78 SKSPFGAGKLIQAPAHVFRQCWVQ 101
+ G I APA V +QC +Q
Sbjct: 183 GQDTLGLKCAILAPAGVEQQCLLQ 206
>gi|45120115 hypothetical protein LOC56905 [Homo sapiens]
Length = 1047
Score = 27.7 bits (60), Expect = 5.5
Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 18/104 (17%)
Query: 54 EHLTQGHQQELRDWNLGEDASLLFSKSPFGAGKLIQAPAHVFRQC-----WVQGNAWISC 108
+H+ Q H+ ELR L E+ +L P ++++ A RQ + G W C
Sbjct: 863 DHVLQEHRVELRPTTLSEERALRELALPGCTSRMLKLLA--LRQLPDIYPDLLGLQWRDC 920
Query: 109 ITK----FD------SKRSPEVA-SSPSYLTVPRRSPLPVFLRP 141
+ + FD S P VA P L + ++SP P +P
Sbjct: 921 VRRQLGDFDTEAGAVSSSEPTVARDEPESLALAQKSPAPKVRKP 964
>gi|134276943 separase [Homo sapiens]
Length = 2120
Score = 27.3 bits (59), Expect = 7.2
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 106 ISCITKFDSKRSPEVASSPSYLTVPRRSPLPVFLRPSDRCVCGGC 150
++ + K +P SSP T P+ P+P FL S C C C
Sbjct: 1109 VATVAKEPGPIAPSTNSSPVLKTKPQ--PIPNFLSHSPTCDCSLC 1151
>gi|239744047 PREDICTED: hypothetical protein [Homo sapiens]
Length = 162
Score = 27.3 bits (59), Expect = 7.2
Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Query: 130 PRRSPLPVFLRPSDRCVCGGCYLGKSTRRRAC----QSLLSDPLGVTFPTQTRP 179
PRR P P P CGG RR+ C QSL P+ T+ P
Sbjct: 6 PRRLPRPHSQEPGSFLRCGGSDASSFQRRQCCGQKPQSLTGAPVRRLTSTENPP 59
>gi|118600983 chondroitin sulfate proteoglycan 3 [Homo sapiens]
Length = 1321
Score = 27.3 bits (59), Expect = 7.2
Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 3/87 (3%)
Query: 50 LRASEHLTQGHQQELRDWNLGEDASLLFSKSPFGAGKLIQAPAHVFRQCWVQGNAWISCI 109
L E +T Q+ L + GE+ +L+ + L P W G W+S +
Sbjct: 394 LEEEEVVTPDFQEPLV--SSGEEETLILEEKQESQQTLSPTPGDPMLASWPTGEVWLSTV 451
Query: 110 TKFDSKRSPEVASSPSYLTVPRRSPLP 136
S A+S S+ V P+P
Sbjct: 452 APSPSDMGAGTAAS-SHTEVAPTDPMP 477
>gi|166064027 cyclin-dependent kinase-like 3 isoform 1 [Homo
sapiens]
Length = 592
Score = 27.3 bits (59), Expect = 7.2
Identities = 18/51 (35%), Positives = 24/51 (47%)
Query: 43 MAGGKLRLRASEHLTQGHQQELRDWNLGEDASLLFSKSPFGAGKLIQAPAH 93
MA G L +S L H+ L+ NL +FSKSP AG ++ H
Sbjct: 194 MATGNPYLPSSSDLDLLHKIVLKVGNLSPHLQNIFSKSPIFAGVVLPQVQH 244
>gi|166064025 cyclin-dependent kinase-like 3 isoform 2 [Homo
sapiens]
Length = 455
Score = 27.3 bits (59), Expect = 7.2
Identities = 18/51 (35%), Positives = 24/51 (47%)
Query: 43 MAGGKLRLRASEHLTQGHQQELRDWNLGEDASLLFSKSPFGAGKLIQAPAH 93
MA G L +S L H+ L+ NL +FSKSP AG ++ H
Sbjct: 194 MATGNPYLPSSSDLDLLHKIVLKVGNLSPHLQNIFSKSPIFAGVVLPQVQH 244
>gi|28827807 NLR family, pyrin domain containing 10 [Homo sapiens]
Length = 655
Score = 27.3 bits (59), Expect = 7.2
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 87 LIQAPAHVFRQCWVQGNAWISCI-TKFDSKRSPEVASSPSYLTVPRRSPLPVFLRPSDRC 145
++Q +++ C V G W+ C + +R V +P T + + FL P D
Sbjct: 340 IVQKNDILYKACQVPGICWVVCSWLQGQMERGKVVLETPRNSTDIFMAYVSTFLPPDDD- 398
Query: 146 VCGGCYLGKSTRRRACQSLLS 166
GGC + +R R +SL S
Sbjct: 399 --GGC--SELSRHRVLRSLCS 415
>gi|239753364 PREDICTED: hypothetical protein [Homo sapiens]
Length = 251
Score = 26.9 bits (58), Expect = 9.4
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 21/61 (34%)
Query: 56 LTQGHQQELRDWNLGEDASLLFSKSPFGAGKL---------IQAPAHVFRQCWVQGN--A 104
+T +QELR F + PF G L + +HV+R CW+QG+ A
Sbjct: 186 VTAAGKQELRQ----------FGRVPFKVGGLENENFKFHSSNSSSHVWRICWIQGSILA 235
Query: 105 W 105
W
Sbjct: 236 W 236
>gi|239747932 PREDICTED: hypothetical protein [Homo sapiens]
Length = 251
Score = 26.9 bits (58), Expect = 9.4
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 21/61 (34%)
Query: 56 LTQGHQQELRDWNLGEDASLLFSKSPFGAGKL---------IQAPAHVFRQCWVQGN--A 104
+T +QELR F + PF G L + +HV+R CW+QG+ A
Sbjct: 186 VTAAGKQELRQ----------FGRVPFKVGGLENENFKFHSSNSSSHVWRICWIQGSILA 235
Query: 105 W 105
W
Sbjct: 236 W 236
>gi|239741826 PREDICTED: hypothetical protein [Homo sapiens]
Length = 251
Score = 26.9 bits (58), Expect = 9.4
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 21/61 (34%)
Query: 56 LTQGHQQELRDWNLGEDASLLFSKSPFGAGKL---------IQAPAHVFRQCWVQGN--A 104
+T +QELR F + PF G L + +HV+R CW+QG+ A
Sbjct: 186 VTAAGKQELRQ----------FGRVPFKVGGLENENFKFHSSNSSSHVWRICWIQGSILA 235
Query: 105 W 105
W
Sbjct: 236 W 236
>gi|239741651 PREDICTED: hypothetical protein XP_002342270 [Homo
sapiens]
Length = 337
Score = 26.9 bits (58), Expect = 9.4
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 33 SSICLQASVWMAGGKLRLRASEHLTQGHQQELRDWNLGEDASLLFSKSPFGAGK 86
S +C + GG +L+ + G + + + G+ A+ +KSP G GK
Sbjct: 128 SQVCGSSPQTRGGGGKKLQRQKATVMGAKSRKKPQHWGQKAATAGAKSPGGGGK 181
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.133 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,091,000
Number of Sequences: 37866
Number of extensions: 388330
Number of successful extensions: 834
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 823
Number of HSP's gapped (non-prelim): 31
length of query: 179
length of database: 18,247,518
effective HSP length: 96
effective length of query: 83
effective length of database: 14,612,382
effective search space: 1212827706
effective search space used: 1212827706
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.