Guide to the Human Genome
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Name: LOC100289073 Sequence: fasta or formatted (235aa) NCBI GI: 239745919
Description:

PREDICTED: hypothetical protein XP_002343617

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.1         26           2
 C cysteine            3.8          9           2
 D aspartate           3.0          7           1
 E glutamate           4.7         11           2
 F phenylalanine       0.9          2           1
 G glycine            11.1         26           2
 H histidine           4.3         10           1
 I isoleucine          1.3          3           1
 K lysine              4.3         10           1
 L leucine             9.4         22           2
 M methionine          0.9          2           1
 N asparagine          1.7          4           2
 P proline             8.5         20           1
 Q glutamine          11.9         28           3
 R arginine            8.1         19           4
 S serine              5.1         12           1
 T threonine           3.4          8           1
 V valine              5.1         12           1
 W tryptophan          1.3          3           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343617 
LOC100291093          1.000   PREDICTED: hypothetical protein XP_002347840 
LOC100293806          0.822   PREDICTED: hypothetical protein 
IL16                  0.026   interleukin 16 isoform 2 
LOC100133636          0.019   PREDICTED: similar to hCG1806822 
CTPS                  0.019   CTP synthase 
COL5A2                0.015   alpha 2 type V collagen preproprotein 
LOC100290274          0.015   PREDICTED: hypothetical protein XP_002346984 
LOC100288645          0.015   PREDICTED: hypothetical protein XP_002342846 
VASP                  0.015   vasodilator-stimulated phosphoprotein 
MAGEB1                0.015   melanoma antigen family B, 1 
MAGEB1                0.015   melanoma antigen family B, 1 
MAGEB1                0.015   melanoma antigen family B, 1 
RIMBP3B               0.015   RIMS binding protein 3B 
RIMBP3C               0.015   RIMS binding protein 3C 
LOC100291688          0.015   PREDICTED: hypothetical protein XP_002345241 
LOC100290054          0.015   PREDICTED: hypothetical protein XP_002348009 
LOC100287338          0.015   PREDICTED: hypothetical protein XP_002343730 
ZNF646                0.013   zinc finger protein 646 
LOC100170229          0.013   hypothetical protein LOC100170229 
C11orf80              0.013   hypothetical protein LOC79703 
C17orf65              0.013   hypothetical protein LOC339201 
SIN3A                 0.011   transcriptional co-repressor Sin3A 
SIN3A                 0.011   transcriptional co-repressor Sin3A 
SIN3A                 0.011   transcriptional co-repressor Sin3A 
DVL1                  0.011   dishevelled 1 
BRD4                  0.011   bromodomain-containing protein 4 isoform long 
RIMBP3                0.011   DKFZP434H0735 protein 
LOC100291782          0.011   PREDICTED: hypothetical protein XP_002346152 
LOC100289951          0.011   PREDICTED: hypothetical protein XP_002347042 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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